[med-svn] [Git][med-team/pynn][master] 34 commits: initial materials for packaging
Andreas Tille
gitlab at salsa.debian.org
Thu Mar 5 06:54:55 GMT 2020
Andreas Tille pushed to branch master at Debian Med / pynn
Commits:
b3f5944e by Yaroslav Halchenko at 2010-11-15T00:12:09-05:00
initial materials for packaging
- - - - -
79b2fa30 by Yaroslav Halchenko at 2010-11-15T12:29:46-05:00
Debian TODO
- - - - -
be696b8c by Yaroslav Halchenko at 2010-11-15T12:30:10-05:00
python-mock into build-depends for testing
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f3adfab5 by Yaroslav Halchenko at 2010-11-19T22:04:02-05:00
various: blends, control, etc
- - - - -
76c84838 by Yaroslav Halchenko at 2011-03-23T21:39:27-04:00
BF: debian/watch to actually download correct tarball
- - - - -
94b1e25c by Yaroslav Halchenko at 2011-03-24T12:05:57-04:00
populating basic DEP5 debian/copyright
- - - - -
18821df1 by Yaroslav Halchenko at 2011-03-24T12:05:57-04:00
we do have ITP but no debian release yet
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1d836ac3 by Yaroslav Halchenko at 2011-03-24T12:05:57-04:00
overhaul TODO and remove stale READMEs
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2f2146c5 by Yaroslav Halchenko at 2011-03-24T12:05:57-04:00
enable testing, added copyright holder (team)
testing would need to be redone as soon as version-specific NEURON
extensions get build
- - - - -
ec52218a by Yaroslav Halchenko at 2011-03-24T12:05:57-04:00
adding up_peopen_deadlock patch
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3983f859 by Yaroslav Halchenko at 2011-03-24T12:05:57-04:00
improved up_popen_deadlock
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7d17e82e by Yaroslav Halchenko at 2011-03-24T12:17:41-04:00
test against current version only for now, but against versioned directory under build
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cb8a6d5e by Yaroslav Halchenko at 2011-03-24T12:24:05-04:00
adding jinja2 into build-depends so we could run tests
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61f2c688 by Yaroslav Halchenko at 2011-03-24T12:24:51-04:00
Merge branch 'upstream'
* upstream:
Imported Upstream version 0.7.0
Initial upstream branch.
- - - - -
0e90a5db by Yaroslav Halchenko at 2011-03-24T15:27:36-04:00
adjusted debian/blends to list the pkg-url
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c7cab274 by Yaroslav Halchenko at 2011-05-01T21:32:21-04:00
Minor changes around for an initial upload to Debian
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3d7b822d by Yaroslav Halchenko at 2011-05-01T21:32:25-04:00
Merge branch 'debian'
* debian:
Minor changes around for an initial upload to Debian
adjusted debian/blends to list the pkg-url
- - - - -
86b5e01f by Yaroslav Halchenko at 2011-05-01T21:53:04-04:00
up_numpy_histogram_no_new patch
- - - - -
53327b77 by Michael Hanke at 2012-03-16T09:16:01+01:00
Merge tag 'upstream/0.7.2'
Upstream version 0.7.2
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c7c04576 by Michael Hanke at 2012-03-16T15:05:15+01:00
Remove obsolete patches -- removed upstream.
- - - - -
c951c98d by Michael Hanke at 2012-03-16T15:05:51+01:00
Ignore quilt status dir.
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51fe86b7 by Michael Hanke at 2012-03-16T15:10:28+01:00
Add patch to disable most of one test
Fails due to rounding/numerical precision problem.
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e5aa9635 by Michael Hanke at 2012-03-16T15:13:51+01:00
Add python-csa as a suggested package, as pynn can use it.
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6d85e9c1 by Michael Hanke at 2012-03-16T15:14:47+01:00
Language fix in description -- lintian complained.
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86b8c740 by Michael Hanke at 2012-03-16T15:15:57+01:00
Bump standards-version, add my copyright and update my email
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2347c256 by Michael Hanke at 2012-03-16T15:20:27+01:00
Prep changelog -- ready to release.
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89370a2b by Yaroslav Halchenko at 2012-07-02T10:20:53-04:00
Merge tag '0.7.3'
Upstream version 0.7.3
* tag '0.7.3':
Imported Upstream version 0.7.3
- - - - -
7df60c8d by Yaroslav Halchenko at 2012-07-02T10:25:02-04:00
changelog entry
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395da0e1 by Yaroslav Halchenko at 2012-07-02T17:04:57-04:00
Added patch 0001-BF-test_StandardTextFile_write-test-on-numbers-with-.patch to prevent FTBFS on the unittest due to mismatch of binary/decimal repr of FP numbers
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2d6d5394 by Yaroslav Halchenko at 2012-07-03T23:46:29-04:00
Merge tag '0.7.4'
Upstream version 0.7.4
* tag '0.7.4':
Imported Upstream version 0.7.4
- - - - -
167e2348 by Yaroslav Halchenko at 2012-07-03T23:50:26-04:00
Removing both patches for the same issue -- adopted upstream
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0e79c560 by Yaroslav Halchenko at 2012-07-03T23:54:58-04:00
Adjusted changelog for 0.7.4-1
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c9b13b8e by Yaroslav Halchenko at 2013-02-06T09:46:06-05:00
Merge tag '0.7.5'
Upstream version 0.7.5
* tag '0.7.5':
Imported Upstream version 0.7.5
- - - - -
0712c5bd by Yaroslav Halchenko at 2013-02-06T09:52:46-05:00
change log and deprecated DM field
- - - - -
13 changed files:
- + .gitignore
- + debian/TODO
- + debian/blends
- + debian/changelog
- + debian/compat
- + debian/control
- + debian/copyright
- + debian/docs
- + debian/pynn.doc-base
- + debian/pyversions
- + debian/rules
- + debian/source/format
- + debian/watch
Changes:
=====================================
.gitignore
=====================================
@@ -0,0 +1 @@
+.pc
=====================================
debian/TODO
=====================================
@@ -0,0 +1,6 @@
+Dependencies
+============:
+
+- TODO: Neuron
+ + as soon as Neuron is available to build extensions -- adjust
+ testing to use version-specific build directory
=====================================
debian/blends
=====================================
@@ -0,0 +1,6 @@
+Source: PyNN
+Format: extended
+
+Tasks: debian-science/neuroscience-modeling
+Pkg-URL: http://neuro.debian.net/pkgs/%(Pkg-Name)s.html
+Language: Python
=====================================
debian/changelog
=====================================
@@ -0,0 +1,34 @@
+pynn (0.7.5-1) experimental; urgency=low
+
+ * New upstream bugfix release
+
+ -- Yaroslav Halchenko <debian at onerussian.com> Wed, 06 Feb 2013 09:46:53 -0500
+
+pynn (0.7.4-1) unstable; urgency=low
+
+ * New upstream release
+ - fixes a few bugs detected upstream
+ - works around regressions of numpy 1.6 (e.g. #679948, #679998) and
+ mock 0.8 allowing unittests to pass (Closes: #669466)
+
+ -- Yaroslav Halchenko <debian at onerussian.com> Tue, 03 Jul 2012 23:54:42 -0400
+
+pynn (0.7.2-1) unstable; urgency=low
+
+ * New upstream release.
+ * Changed maintainer email.
+ * Added python-csa as a recommended package (connectors can use it).
+ * Bump standards-version to 3.9.3 -- no changes necessary.
+ * Indicate compliance with copyright format 1.0.
+ * Fix language issue in package description.
+ * Add python-csa as suggested package.
+ * Disable most of one test for numerical instabilities.
+ * Remove all previous patches -- merged upstream.
+
+ -- Michael Hanke <mih at debian.org> Fri, 16 Mar 2012 15:16:54 +0100
+
+pynn (0.7.0-1) unstable; urgency=low
+
+ * Initial release (Closes: #604159)
+
+ -- Yaroslav Halchenko <debian at onerussian.com> Mon, 15 Nov 2010 00:00:43 -0500
=====================================
debian/compat
=====================================
@@ -0,0 +1 @@
+7
=====================================
debian/control
=====================================
@@ -0,0 +1,26 @@
+Source: pynn
+Section: python
+Priority: extra
+Maintainer: NeuroDebian Team <team at neuro.debian.net>
+Uploaders: Yaroslav Halchenko <debian at onerussian.com>,
+ Michael Hanke <mih at debian.org>
+Build-Depends: debhelper (>= 7.0.50~),
+ python, python-support,
+ python-numpy,
+ python-nose, python-mock,
+ python-cheetah, python-jinja2
+Standards-Version: 3.9.3
+Homepage: http://neuralensemble.org/trac/PyNN
+Vcs-Browser: http://git.debian.org/?p=pkg-exppsy/pynn.git
+Vcs-Git: git://git.debian.org/git/pkg-exppsy/pynn.git
+
+Package: python-pynn
+Architecture: all
+Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends}
+Recommends: python-jinja2, python-cheetah
+Suggests: python-neuron, python-brian, python-csa
+Description: simulator-independent specification of neuronal network models
+ PyNN allows for coding a model once and run it without modification
+ on any simulator that PyNN supports (currently NEURON, NEST, PCSIM
+ and Brian). PyNN translates standard cell-model names and parameter
+ names into simulator-specific names.
=====================================
debian/copyright
=====================================
@@ -0,0 +1,566 @@
+Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: PyNN
+Upstream-Contact: Andrew Davison <andrew.davison at unic.cnrs-gif.fr>
+Source: http://pypi.python.org/pypi/PyNN
+X-References:
+ Davison AP, Brüderle D, Eppler JM, Kremkow J, Muller E, Pecevski DA,
+ Perrinet L and Yger P (2008) PyNN: a common interface for neuronal
+ network simulators. Front. Neuroinform. doi:10.3389/neuro.11.011.2008
+
+Files: *
+Copyright: PyNN Contributors
+License: CeCILL-2
+ This software is governed by the CeCILL license under French law and
+ abiding by the rules of distribution of free software. You can use,
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+Files: debian/*
+Copyright: 2010-2011, Yaroslav Halchenko <debian at onerussian.com>
+ 2012, Michael Hanke <michael.hanke at gmail.com>
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+ generally, any consequential loss. In particular the Parties expressly
+ agree that any or all pecuniary or business loss (i.e. loss of data,
+ loss of profits, operating loss, loss of customers or orders,
+ opportunity cost, any disturbance to business activities) or any or all
+ legal proceedings instituted against the Licensee by a third party,
+ shall constitute consequential loss and shall not provide entitlement to
+ any or all compensation from the Licensor.
+ .
+ .
+ Article 9 - WARRANTY
+ .
+ 9.1 The Licensee acknowledges that the scientific and technical
+ state-of-the-art when the Software was distributed did not enable all
+ possible uses to be tested and verified, nor for the presence of
+ possible defects to be detected. In this respect, the Licensee's
+ attention has been drawn to the risks associated with loading, using,
+ modifying and/or developing and reproducing the Software which are
+ reserved for experienced users.
+ .
+ The Licensee shall be responsible for verifying, by any or all means,
+ the suitability of the product for its requirements, its good working
+ order, and for ensuring that it shall not cause damage to either persons
+ or properties.
+ .
+ 9.2 The Licensor hereby represents, in good faith, that it is entitled
+ to grant all the rights over the Software (including in particular the
+ rights set forth in Article 5).
+ .
+ 9.3 The Licensee acknowledges that the Software is supplied "as is" by
+ the Licensor without any other express or tacit warranty, other than
+ that provided for in Article 9.2 and, in particular, without any warranty
+ as to its commercial value, its secured, safe, innovative or relevant
+ nature.
+ .
+ Specifically, the Licensor does not warrant that the Software is free
+ from any error, that it will operate without interruption, that it will
+ be compatible with the Licensee's own equipment and software
+ configuration, nor that it will meet the Licensee's requirements.
+ .
+ 9.4 The Licensor does not either expressly or tacitly warrant that the
+ Software does not infringe any third party intellectual property right
+ relating to a patent, software or any other property right. Therefore,
+ the Licensor disclaims any and all liability towards the Licensee
+ arising out of any or all proceedings for infringement that may be
+ instituted in respect of the use, modification and redistribution of the
+ Software. Nevertheless, should such proceedings be instituted against
+ the Licensee, the Licensor shall provide it with technical and legal
+ assistance for its defense. Such technical and legal assistance shall be
+ decided on a case-by-case basis between the relevant Licensor and the
+ Licensee pursuant to a memorandum of understanding. The Licensor
+ disclaims any and all liability as regards the Licensee's use of the
+ name of the Software. No warranty is given as regards the existence of
+ prior rights over the name of the Software or as regards the existence
+ of a trademark.
+ .
+ .
+ Article 10 - TERMINATION
+ .
+ 10.1 In the event of a breach by the Licensee of its obligations
+ hereunder, the Licensor may automatically terminate this Agreement
+ thirty (30) days after notice has been sent to the Licensee and has
+ remained ineffective.
+ .
+ 10.2 A Licensee whose Agreement is terminated shall no longer be
+ authorized to use, modify or distribute the Software. However, any
+ licenses that it may have granted prior to termination of the Agreement
+ shall remain valid subject to their having been granted in compliance
+ with the terms and conditions hereof.
+ .
+ .
+ Article 11 - MISCELLANEOUS
+ .
+ .
+ 11.1 EXCUSABLE EVENTS
+ .
+ Neither Party shall be liable for any or all delay, or failure to
+ perform the Agreement, that may be attributable to an event of force
+ majeure, an act of God or an outside cause, such as defective
+ functioning or interruptions of the electricity or telecommunications
+ networks, network paralysis following a virus attack, intervention by
+ government authorities, natural disasters, water damage, earthquakes,
+ fire, explosions, strikes and labor unrest, war, etc.
+ .
+ 11.2 Any failure by either Party, on one or more occasions, to invoke
+ one or more of the provisions hereof, shall under no circumstances be
+ interpreted as being a waiver by the interested Party of its right to
+ invoke said provision(s) subsequently.
+ .
+ 11.3 The Agreement cancels and replaces any or all previous agreements,
+ whether written or oral, between the Parties and having the same
+ purpose, and constitutes the entirety of the agreement between said
+ Parties concerning said purpose. No supplement or modification to the
+ terms and conditions hereof shall be effective as between the Parties
+ unless it is made in writing and signed by their duly authorized
+ representatives.
+ .
+ 11.4 In the event that one or more of the provisions hereof were to
+ conflict with a current or future applicable act or legislative text,
+ said act or legislative text shall prevail, and the Parties shall make
+ the necessary amendments so as to comply with said act or legislative
+ text. All other provisions shall remain effective. Similarly, invalidity
+ of a provision of the Agreement, for any reason whatsoever, shall not
+ cause the Agreement as a whole to be invalid.
+ .
+ .
+ 11.5 LANGUAGE
+ .
+ The Agreement is drafted in both French and English and both versions
+ are deemed authentic.
+ .
+ .
+ Article 12 - NEW VERSIONS OF THE AGREEMENT
+ .
+ 12.1 Any person is authorized to duplicate and distribute copies of this
+ Agreement.
+ .
+ 12.2 So as to ensure coherence, the wording of this Agreement is
+ protected and may only be modified by the authors of the License, who
+ reserve the right to periodically publish updates or new versions of the
+ Agreement, each with a separate number. These subsequent versions may
+ address new issues encountered by Free Software.
+ .
+ 12.3 Any Software distributed under a given version of the Agreement may
+ only be subsequently distributed under the same version of the Agreement
+ or a subsequent version, subject to the provisions of Article 5.3.4.
+ .
+ .
+ Article 13 - GOVERNING LAW AND JURISDICTION
+ .
+ 13.1 The Agreement is governed by French law. The Parties agree to
+ endeavor to seek an amicable solution to any disagreements or disputes
+ that may arise during the performance of the Agreement.
+ .
+ 13.2 Failing an amicable solution within two (2) months as from their
+ occurrence, and unless emergency proceedings are necessary, the
+ disagreements or disputes shall be referred to the Paris Courts having
+ jurisdiction, by the more diligent Party.
+ .
+ Version 2.0 dated 2006-09-05.
=====================================
debian/docs
=====================================
@@ -0,0 +1 @@
+README
=====================================
debian/pynn.doc-base
=====================================
@@ -0,0 +1,20 @@
+Document: pynn
+Title: Debian pynn Manual
+Author: <insert document author here>
+Abstract: This manual describes what pynn is
+ and how it can be used to
+ manage online manuals on Debian systems.
+Section: unknown
+
+Format: debiandoc-sgml
+Files: /usr/share/doc/pynn/pynn.sgml.gz
+
+Format: postscript
+Files: /usr/share/doc/pynn/pynn.ps.gz
+
+Format: text
+Files: /usr/share/doc/pynn/pynn.text.gz
+
+Format: HTML
+Index: /usr/share/doc/pynn/html/index.html
+Files: /usr/share/doc/pynn/html/*.html
=====================================
debian/pyversions
=====================================
@@ -0,0 +1 @@
+2.5-
=====================================
debian/rules
=====================================
@@ -0,0 +1,10 @@
+#!/usr/bin/make -f
+# -*- makefile -*-
+
+%:
+ dh $@
+
+override_dh_auto_test:
+ for PYVER in `pyversions -d -r -v`; do \
+ PYTHONPATH=`/bin/ls -d $(CURDIR)/build/lib.*-$$PYVER` $$PYTHON \
+ /usr/bin/nosetests -s -v --exclude='_(nest|neuron)' test/; done
=====================================
debian/source/format
=====================================
@@ -0,0 +1 @@
+3.0 (quilt)
=====================================
debian/watch
=====================================
@@ -0,0 +1,3 @@
+version=3
+opts=filenamemangle=s/.*(PyNN-.*)#.*/$1/ \
+ http://pypi.python.org/pypi/PyNN/ .*/PyNN-(.*)\.tar\.gz.*
View it on GitLab: https://salsa.debian.org/med-team/pynn/-/compare/e7045eddc6ee761bbfb2a8357d8fb9cf8ba171b6...0712c5bd4fa28a8c82c95c91732c4442bfe5919a
--
View it on GitLab: https://salsa.debian.org/med-team/pynn/-/compare/e7045eddc6ee761bbfb2a8357d8fb9cf8ba171b6...0712c5bd4fa28a8c82c95c91732c4442bfe5919a
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