Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
689d5439 by Andreas Tille at 2020-03-08T13:44:09+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,42 +1,41 @@
-Last-Update: Sun, 08 Mar 2020 01:42:03 +0000
+Last-Update: Sun, 08 Mar 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
- dcmtk | 178 | {imaging} |
- orthanc | 98 | {practice,imaging} |
- gdcm | 47 | {imaging-dev} |
+ dcmtk | 180 | {imaging} |
+ orthanc | 99 | {practice,imaging} |
+ gdcm | 50 | {imaging-dev} |
dcm2niix | 40 | {imaging} |
- orthanc-wsi | 38 | {oncology,laboratory,imaging,his,practice} |
- amide | 35 | {imaging} |
+ orthanc-wsi | 37 | {oncology,laboratory,imaging,his,practice} |
+ amide | 34 | {imaging} |
dicomscope | 31 | {imaging} |
dicom3tools | 29 | {imaging} |
- medicalterms | 26 | {tools} |
+ medicalterms | 27 | {tools} |
htsjdk | 25 | {bio-dev} |
gdcm | 19 | {imaging} |
- gnumed-server | 18 | {practice} |
+ gnumed-server | 17 | {practice} |
pixelmed | 16 | {imaging} |
- invesalius | 14 | {imaging} |
king | 14 | {imaging,typesetting} |
ngs-sdk | 14 | {bio-dev} |
+ adun.app | 13 | {bio} |
+ insighttoolkit4 | 13 | {imaging-dev} |
+ invesalius | 13 | {imaging} |
minc-tools | 13 | {imaging} |
- adun.app | 12 | {bio} |
- insighttoolkit4 | 11 | {imaging-dev} |
openslide | 11 | {imaging} |
vtk-dicom | 11 | {imaging} |
biosig4c++ | 10 | {imaging,physics} |
mia | 10 | {imaging} |
+ plastimatch | 10 | {imaging} |
gdcm | 9 | {imaging-dev} |
jebl2 | 9 | {bio-dev} |
- plastimatch | 9 | {imaging} |
tree-puzzle | 9 | {bio,bio-phylogeny,cloud} |
librg-utils-perl | 8 | {bio} |
+ melting | 8 | {bio,cloud} |
ngs-sdk | 8 | {bio-dev} |
biojava-live | 7 | {bio-dev} |
dicompyler | 7 | {oncology} |
fastlink | 7 | {cloud,bio} |
- melting | 7 | {bio,cloud} |
ncbi-entrez-direct | 7 | {bio} |
- obitools | 7 | {bio} |
psychopy | 7 | {psychology} |
sortmerna | 7 | {bio} |
staden | 7 | {bio} |
@@ -46,6 +45,7 @@ Last-Update: Sun, 08 Mar 2020 01:42:03 +0000
mipe | 6 | {bio,cloud} |
ncbi-seg | 6 | {bio} |
norsp | 6 | {bio} |
+ obitools | 6 | {bio} |
estscan | 5 | {bio} |
gasic | 5 | {cloud,bio} |
idba | 5 | {bio,cloud} |
@@ -99,6 +99,7 @@ Last-Update: Sun, 08 Mar 2020 01:42:03 +0000
transtermhp | 4 | {bio} |
treeview | 4 | {bio-phylogeny,bio} |
velvetoptimiser | 4 | {bio} |
+ vsearch | 4 | {bio} |
zalign | 4 | {cloud,bio} |
assemblytics | 3 | {bio} |
bandage | 3 | {bio} |
@@ -139,7 +140,6 @@ Last-Update: Sun, 08 Mar 2020 01:42:03 +0000
seqsero | 3 | {bio} |
seqtools | 3 | {bio} |
spread-phy | 3 | {bio-phylogeny,bio} |
- vsearch | 3 | {bio} |
yaha | 3 | {bio} |
abacas | 2 | {bio} |
acedb | 2 | {bio,cloud} |
@@ -172,7 +172,6 @@ Last-Update: Sun, 08 Mar 2020 01:42:03 +0000
mptp | 2 | {bio} |
mrs | 2 | {bio} |
nanook | 2 | {bio} |
- nutsqlite | 2 | {tools} |
patman | 2 | {bio} |
phipack | 2 | {bio} |
phybin | 2 | {bio} |
@@ -223,6 +222,7 @@ Last-Update: Sun, 08 Mar 2020 01:42:03 +0000
medicalterms | 1 | {tools} |
mencal | 1 | {tools} |
metaphlan2 | 1 | {bio} |
+ nutsqlite | 1 | {tools} |
opencfu | 1 | {laboratory} |
orthanc-mysql | 1 | {imaging} |
orthanc-postgresql | 1 | {imaging} |
@@ -233,7 +233,6 @@ Last-Update: Sun, 08 Mar 2020 01:42:03 +0000
roguenarok | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
scrm | 1 | {bio} |
- seqan | 1 | {bio-dev} |
seqmagick | 1 | {bio} |
sga | 1 | {bio} |
sift | 1 | {bio} |
@@ -310,6 +309,7 @@ Last-Update: Sun, 08 Mar 2020 01:42:03 +0000
relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
+ seqan | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
simpleitk | 0 | {imaging-dev} |
skewer | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sun, 08 Mar 2020 01:42:03 +0000
+Last-Update: Sun, 08 Mar 2020 13:42:03 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -7,7 +7,7 @@ Last-Update: Sun, 08 Mar 2020 01:42:03 +0000
atropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31+00
baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
beast2-mcmc | 2.6.0 | 2.6.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-07-31 13:08:02+00
- biobambam2 | 2.0.153 | 2.0.156+ds | Andreas Tille | Andreas Tille | 2020-02-05 13:20:41+00
+ biobambam2 | 2.0.153 | 2.0.157+ds | Andreas Tille | Andreas Tille | 2020-02-05 13:20:41+00
biojava-live | 1.7.1 | 1.9.3 | Andreas Tille,Olivier Sallou,Steffen Moeller | Andreas Tille | 2018-11-12 15:49:23+00
biomaj3 | 3.1.14 | 3.1.16 | Olivier Sallou | Olivier Sallou | 2020-02-08 18:22:42+00
biomaj3-core | 3.0.19 | 3.0.22 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:23+00
@@ -40,7 +40,7 @@ Last-Update: Sun, 08 Mar 2020 01:42:03 +0000
libedlib | 1.2.4 | 1.2.6 | Andreas Tille | Andreas Tille | 2019-08-19 00:34:56+00
libgclib | 0.11.4 | 0.11.7 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00
libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200303.26c9c1f | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
- libmaus2 | 2.0.698 | 2.0.705 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-02-05 10:04:12+00
+ libmaus2 | 2.0.698 | 2.0.708 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-02-05 10:04:12+00
libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
libundead | 1.0.10 | 1.1.1 | Andreas Tille | Andreas Tille | 2019-09-13 21:06:10+00
metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
@@ -61,11 +61,11 @@ Last-Update: Sun, 08 Mar 2020 01:42:03 +0000
psychopy | 2020.1.1 | 2020.2.3 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-02-24 08:55:42+00
pydicom | 1.4.1 | 1.4.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-23 12:34:53+00
python-avro | 1.9.1 | 1.9.2 | Afif Elghraoui | Andreas Tille | 2019-12-18 08:41:55+00
- python-bids-validator | 1.2.4 | 1.4.2 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
+ python-bids-validator | 1.2.4 | 1.4.4 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
python-cgecore | 1.5.2 | 1.5.3 | Andreas Tille | Steffen Moeller | 2020-01-06 17:05:53+00
python-cobra | 0.14.2 | 0.17.1 | Afif Elghraoui | Liubov Chuprikova | 2019-03-02 06:49:44+00
python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
- python-pbcommand | 1.1.1+git20191122.ec024c3 | 1.1.1+git20200227.663a4d9 | Andreas Tille | Andreas Tille | 2019-12-19 08:42:03+00
+ python-pbcommand | 1.1.1+git20191122.ec024c3 | 1.1.1+git20200304.58aa544 | Andreas Tille | Andreas Tille | 2019-12-19 08:42:03+00
python-pymummer | 0.10.3 | 0.11.0 | Afif Elghraoui | Andreas Tille | 2019-01-07 09:06:07+00
python-schema-salad | 5.0.20200220195218 | 5.0.20200302192450 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-27 19:19:53+00
python-treetime | 0.7.1 | 0.7.4 | Andreas Tille | Steffen Moeller | 2020-01-18 20:52:48+00
@@ -88,12 +88,13 @@ Last-Update: Sun, 08 Mar 2020 01:42:03 +0000
spades | 3.13.1 | 3.14.0 | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss | Andreas Tille | 2019-11-22 10:05:04+00
spoa | 3.0.1 | 3.0.2 | Andreas Tille | Andreas Tille | 2019-09-16 11:53:05+00
sra-sdk | 2.9.3 | 2.10.4 | Andreas Tille,Charles Plessy | Steffen Moeller | 2018-10-23 20:40:02+00
+ stacks | 2.41 | 2.52 | Andreas Tille,Tim Booth | Andreas Tille | 2019-07-12 19:11:30+00
sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00
t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(91 rows)
+(92 rows)
source | id | severity | title
@@ -116,6 +117,7 @@ Last-Update: Sun, 08 Mar 2020 01:42:03 +0000
biomaj3 | 950914 | minor | python3-biomaj3: Depends on python-influxdb wich ftbs, patch to remove dependency
bwa | 942447 | normal | Build bwa on ppc64el
camp | 900181 | normal | camp: FTBFS on 32bit big endian: check metaclass->function("f4").call(object, camp::Args(1, 4, 15)).to<unsigned long>() == 20 has failed
+ changeo | 953321 | serious | src:changeo: fails to migrate to testing for too long
clonalorigin | 884475 | wishlist | clonalorigin: FTBFS on alpha: tests time out
dawg | 903886 | important | dawg: Test suite fails
dcmtk | 637687 | wishlist | libdcmtk2-dev: Dcmtk headers cause compile failure
@@ -196,6 +198,7 @@ Last-Update: Sun, 08 Mar 2020 01:42:03 +0000
libsis-jhdf5-java | 846735 | serious | libsis-jhdf5-java: FTBFS: java.lang.NoClassDefFoundError: Could not initialize class ch.systemsx.cisd.hdf5.CharacterEncoding
libundead | 859667 | important | "Will be removed once new version of libbiod is available"
macs | 949204 | serious | macs FTBFS on most architectures. test failures
+ macs | 953323 | serious | src:macs: fails to migrate to testing for too long
macsyfinder | 933928 | normal | macsyfinder: Port to Python3 needed
macsyfinder | 936977 | normal | macsyfinder: Python2 removal in sid/bullseye
medicalterms | 602423 | important | hunspell-de-med: german dictionary unusable
@@ -289,5 +292,5 @@ Last-Update: Sun, 08 Mar 2020 01:42:03 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(191 rows)
+(193 rows)
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/689d5439232f0760027370850e5c618dfbd9639a
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/689d5439232f0760027370850e5c618dfbd9639a
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