Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
acea6a04 by Andreas Tille at 2020-03-09T13:48:22+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,223 +1,225 @@
-Last-Update: Mon, 09 Mar 2020 01:42:03 +0000
+Last-Update: Mon, 09 Mar 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
- dcmtk | 180 | {imaging} |
- orthanc | 99 | {practice,imaging} |
- gdcm | 50 | {imaging-dev} |
- dcm2niix | 40 | {imaging} |
- orthanc-wsi | 37 | {oncology,laboratory,imaging,his,practice} |
- amide | 34 | {imaging} |
+ dcmtk | 181 | {imaging} |
+ orthanc | 101 | {practice,imaging} |
+ gdcm | 48 | {imaging-dev} |
+ dcm2niix | 41 | {imaging} |
+ orthanc-wsi | 38 | {oncology,laboratory,imaging,his,practice} |
+ amide | 36 | {imaging} |
dicomscope | 31 | {imaging} |
- dicom3tools | 29 | {imaging} |
+ dicom3tools | 30 | {imaging} |
medicalterms | 27 | {tools} |
- htsjdk | 25 | {bio-dev} |
- gdcm | 19 | {imaging} |
+ htsjdk | 26 | {bio-dev} |
+ gdcm | 20 | {imaging} |
gnumed-server | 17 | {practice} |
- pixelmed | 16 | {imaging} |
- king | 14 | {imaging,typesetting} |
+ pixelmed | 17 | {imaging} |
+ king | 15 | {imaging,typesetting} |
+ invesalius | 14 | {imaging} |
+ minc-tools | 14 | {imaging} |
ngs-sdk | 14 | {bio-dev} |
adun.app | 13 | {bio} |
- insighttoolkit4 | 13 | {imaging-dev} |
- invesalius | 13 | {imaging} |
- minc-tools | 13 | {imaging} |
- openslide | 11 | {imaging} |
- vtk-dicom | 11 | {imaging} |
+ insighttoolkit4 | 12 | {imaging-dev} |
+ openslide | 12 | {imaging} |
+ vtk-dicom | 12 | {imaging} |
biosig4c++ | 10 | {imaging,physics} |
+ jebl2 | 10 | {bio-dev} |
mia | 10 | {imaging} |
- plastimatch | 10 | {imaging} |
+ ngs-sdk | 10 | {bio-dev} |
gdcm | 9 | {imaging-dev} |
- jebl2 | 9 | {bio-dev} |
+ librg-utils-perl | 9 | {bio} |
+ plastimatch | 9 | {imaging} |
tree-puzzle | 9 | {bio,bio-phylogeny,cloud} |
- librg-utils-perl | 8 | {bio} |
+ biojava-live | 8 | {bio-dev} |
+ fastlink | 8 | {cloud,bio} |
melting | 8 | {bio,cloud} |
- ngs-sdk | 8 | {bio-dev} |
- biojava-live | 7 | {bio-dev} |
+ ncbi-entrez-direct | 8 | {bio} |
+ sortmerna | 8 | {bio} |
+ staden | 8 | {bio} |
+ arden | 7 | {cloud,bio} |
+ cgview | 7 | {bio} |
dicompyler | 7 | {oncology} |
- fastlink | 7 | {cloud,bio} |
- ncbi-entrez-direct | 7 | {bio} |
+ maqview | 7 | {bio} |
+ mipe | 7 | {bio,cloud} |
+ ncbi-seg | 7 | {bio} |
+ norsp | 7 | {bio} |
+ obitools | 7 | {bio} |
psychopy | 7 | {psychology} |
- sortmerna | 7 | {bio} |
- staden | 7 | {bio} |
- arden | 6 | {cloud,bio} |
- cgview | 6 | {bio} |
- maqview | 6 | {bio} |
- mipe | 6 | {bio,cloud} |
- ncbi-seg | 6 | {bio} |
- norsp | 6 | {bio} |
- obitools | 6 | {bio} |
+ jaligner | 6 | {bio} |
+ neobio | 6 | {cloud,bio} |
+ phyutility | 6 | {bio,cloud} |
+ piler | 6 | {bio} |
+ radiant | 6 | {bio} |
+ sigma-align | 6 | {bio-phylogeny,bio,cloud} |
+ ampliconnoise | 5 | {cloud,bio} |
+ anfo | 5 | {cloud,bio} |
+ biomaj3-cli | 5 | {cloud} |
+ bio-tradis | 5 | {bio-dev,bio} |
+ dazzdb | 5 | {bio} |
+ ea-utils | 5 | {bio} |
+ ecopcr | 5 | {bio} |
+ embassy-domainatrix | 5 | {cloud,bio} |
+ embassy-domalign | 5 | {bio,cloud} |
+ embassy-domsearch | 5 | {bio,cloud} |
estscan | 5 | {bio} |
+ freecontact | 5 | {bio,cloud} |
gasic | 5 | {cloud,bio} |
idba | 5 | {bio,cloud} |
- jaligner | 5 | {bio} |
king-probe | 5 | {bio} |
lagan | 5 | {bio} |
libsbml | 5 | {bio-dev} |
- neobio | 5 | {cloud,bio} |
+ mauve-aligner | 5 | {bio} |
openslide | 5 | {imaging-dev} |
orthanc-webviewer | 5 | {imaging} |
- phyutility | 5 | {bio,cloud} |
- piler | 5 | {bio} |
+ paml | 5 | {bio} |
+ perm | 5 | {cloud,bio} |
+ predictprotein | 5 | {bio} |
+ probabel | 5 | {bio,cloud} |
pymia | 5 | {imaging-dev} |
- radiant | 5 | {bio} |
+ salmon | 5 | {bio} |
sibsim4 | 5 | {cloud,bio} |
- sigma-align | 5 | {bio-phylogeny,bio,cloud} |
- ampliconnoise | 4 | {cloud,bio} |
- anfo | 4 | {cloud,bio} |
- biomaj3-cli | 4 | {cloud} |
- bio-tradis | 4 | {bio-dev,bio} |
+ squizz | 5 | {bio,cloud} |
+ treeview | 5 | {bio-phylogeny,bio} |
+ zalign | 5 | {cloud,bio} |
+ assemblytics | 4 | {bio} |
+ beast2-mcmc | 4 | {bio} |
+ bppsuite | 4 | {bio} |
+ brig | 4 | {bio} |
cluster3 | 4 | {bio} |
- dazzdb | 4 | {bio} |
+ codonw | 4 | {bio} |
diamond-aligner | 4 | {bio} |
- ea-utils | 4 | {bio} |
- ecopcr | 4 | {bio} |
edtsurf | 4 | {bio} |
- embassy-domainatrix | 4 | {cloud,bio} |
- embassy-domalign | 4 | {bio,cloud} |
- embassy-domsearch | 4 | {bio,cloud} |
+ elph | 4 | {bio} |
fitgcp | 4 | {bio,cloud} |
- freecontact | 4 | {bio,cloud} |
+ harvest-tools | 4 | {bio} |
indelible | 4 | {bio} |
ipig | 4 | {bio} |
jellyfish1 | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
+ libgff | 4 | {bio-dev} |
+ libncl | 4 | {bio} |
+ lucy | 4 | {bio} |
mapsembler2 | 4 | {bio,cloud} |
- mauve-aligner | 4 | {bio} |
- paml | 4 | {bio} |
+ microbegps | 4 | {bio} |
+ murasaki | 4 | {bio} |
paraclu | 4 | {cloud,bio} |
parsnp | 4 | {bio} |
- perm | 4 | {cloud,bio} |
+ phast | 4 | {bio} |
+ placnet | 4 | {bio} |
plasmidseeker | 4 | {bio} |
- predictprotein | 4 | {bio} |
+ prime-phylo | 4 | {cloud,bio} |
proalign | 4 | {bio-phylogeny,bio} |
- probabel | 4 | {bio,cloud} |
+ pscan-tfbs | 4 | {bio} |
+ rdp-readseq | 4 | {bio} |
relion | 4 | {bio} |
- salmon | 4 | {bio} |
- seqtools | 4 | {bio} |
- squizz | 4 | {bio,cloud} |
+ saint | 4 | {bio} |
+ seer | 4 | {bio} |
+ seqsero | 4 | {bio} |
tracetuner | 4 | {bio} |
transtermhp | 4 | {bio} |
- treeview | 4 | {bio-phylogeny,bio} |
velvetoptimiser | 4 | {bio} |
vsearch | 4 | {bio} |
- zalign | 4 | {cloud,bio} |
- assemblytics | 3 | {bio} |
+ alter-sequence-alignment | 3 | {bio} |
+ baitfisher | 3 | {bio} |
bandage | 3 | {bio} |
- beast2-mcmc | 3 | {bio} |
+ beast-mcmc | 3 | {bio-phylogeny,bio} |
biomaj3-daemon | 3 | {bio} |
- bppsuite | 3 | {bio} |
- brig | 3 | {bio} |
+ bitseq | 3 | {bio} |
canu | 3 | {bio} |
- codonw | 3 | {bio} |
+ centrifuge | 3 | {bio} |
+ clonalorigin | 3 | {bio} |
+ daligner | 3 | {bio-ngs,bio} |
+ dascrubber | 3 | {bio} |
delly | 3 | {bio} |
- elph | 3 | {bio} |
gatb-core | 3 | {bio} |
getdata | 3 | {bio} |
ghmm | 3 | {bio} |
- harvest-tools | 3 | {bio} |
- libgff | 3 | {bio-dev} |
+ lamarc | 3 | {bio} |
libminc | 3 | {imaging-dev} |
- libncl | 3 | {bio} |
- lucy | 3 | {bio} |
+ libpal-java | 3 | {bio-dev} |
+ maffilter | 3 | {bio} |
mhap | 3 | {bio-ngs,bio} |
- microbegps | 3 | {bio} |
mlv-smile | 3 | {cloud,bio} |
- murasaki | 3 | {bio} |
+ mptp | 3 | {bio} |
orthanc-dicomweb | 3 | {imaging} |
pbdagcon | 3 | {bio} |
- phast | 3 | {bio} |
+ phipack | 3 | {bio} |
pilon | 3 | {bio} |
- placnet | 3 | {bio} |
- prime-phylo | 3 | {cloud,bio} |
+ poretools | 3 | {bio} |
pscan-chip | 3 | {bio} |
- pscan-tfbs | 3 | {bio} |
quorum | 3 | {bio} |
+ rampler | 3 | {bio} |
rdp-alignment | 3 | {bio} |
- rdp-readseq | 3 | {bio} |
- saint | 3 | {bio} |
- seer | 3 | {bio} |
+ repeatmasker-recon | 3 | {bio} |
+ samblaster | 3 | {bio} |
+ scythe | 3 | {bio} |
segemehl | 3 | {bio} |
- seqsero | 3 | {bio} |
seqtools | 3 | {bio} |
+ sickle | 3 | {bio} |
+ sprai | 3 | {bio} |
spread-phy | 3 | {bio-phylogeny,bio} |
+ sweed | 3 | {bio} |
+ transrate-tools | 3 | {bio} |
+ tvc | 3 | {bio} |
yaha | 3 | {bio} |
abacas | 2 | {bio} |
acedb | 2 | {bio,cloud} |
- alter-sequence-alignment | 2 | {bio} |
andi | 2 | {bio} |
- baitfisher | 2 | {bio} |
bart-view | 2 | {imaging} |
beads | 2 | {bio} |
- beast-mcmc | 2 | {bio-phylogeny,bio} |
bio-rainbow | 2 | {bio} |
biosig4c++ | 2 | {physics,imaging-dev} |
- bitseq | 2 | {bio} |
blasr | 2 | {bio-ngs,bio} |
- centrifuge | 2 | {bio} |
- clonalorigin | 2 | {bio} |
+ clonalframeml | 2 | {bio} |
ctn | 2 | {imaging-dev} |
cufflinks | 2 | {bio,cloud} |
- daligner | 2 | {bio-ngs,bio} |
- dascrubber | 2 | {bio} |
dindel | 2 | {bio} |
dwgsim | 2 | {bio} |
+ elastix | 2 | {imaging} |
fastml | 2 | {bio} |
+ freebayes | 2 | {bio} |
fsm-lite | 2 | {bio} |
hinge | 2 | {bio} |
igor | 2 | {bio} |
- lamarc | 2 | {bio} |
- libpal-java | 2 | {bio-dev} |
+ jmodeltest | 2 | {bio-phylogeny,bio} |
librdp-taxonomy-tree-java | 2 | {bio-dev} |
- maffilter | 2 | {bio} |
- mptp | 2 | {bio} |
+ logol | 2 | {bio} |
mrs | 2 | {bio} |
nanook | 2 | {bio} |
patman | 2 | {bio} |
- phipack | 2 | {bio} |
phybin | 2 | {bio} |
- poretools | 2 | {bio} |
prottest | 2 | {bio-phylogeny,bio} |
qcumber | 2 | {bio} |
qrisk2 | 2 | {practice} |
rambo-k | 2 | {bio} |
- rampler | 2 | {bio} |
rdp-classifier | 2 | {bio} |
relion | 2 | {bio} |
- repeatmasker-recon | 2 | {bio} |
+ roguenarok | 2 | {bio} |
rtax | 2 | {cloud,bio} |
runcircos-gui | 2 | {bio} |
- samblaster | 2 | {bio} |
- scythe | 2 | {bio} |
- seqtools | 2 | {bio} |
- sickle | 2 | {bio} |
+ sga | 2 | {bio} |
+ snap-aligner | 2 | {bio} |
soapaligner | 2 | {bio} |
soapsnp | 2 | {bio} |
- sprai | 2 | {bio} |
+ srf | 2 | {bio-dev} |
sumatra | 2 | {bio} |
- sweed | 2 | {bio} |
trace2dbest | 2 | {bio} |
- transrate-tools | 2 | {bio} |
- tvc | 2 | {bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
blimps | 1 | {bio} |
- clonalframeml | 1 | {bio} |
edflib | 1 | {imaging-dev} |
- elastix | 1 | {imaging} |
embassy-phylip | 1 | {cloud,bio} |
emmax | 1 | {bio} |
fasta3 | 1 | {bio} |
- freebayes | 1 | {bio} |
hunspell-en-med | 1 | {tools} |
- jmodeltest | 1 | {bio-phylogeny,bio} |
kma | 1 | {bio} |
kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libhmsbeagle | 1 | {bio-dev} |
- libsmithwaterman | 1 | {bio} |
libsmithwaterman | 1 | {bio-dev} |
+ libsmithwaterman | 1 | {bio} |
libvistaio | 1 | {imaging-dev} |
- logol | 1 | {bio} |
maxflow | 1 | {imaging-dev} |
medicalterms | 1 | {tools} |
mencal | 1 | {tools} |
@@ -230,16 +232,12 @@ Last-Update: Mon, 09 Mar 2020 01:42:03 +0000
papyrus | 1 | {imaging-dev} |
pilercr | 1 | {bio} |
python-tinyalign | 1 | {bio-dev,bio} |
- roguenarok | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
scrm | 1 | {bio} |
seqmagick | 1 | {bio} |
- sga | 1 | {bio} |
sift | 1 | {bio} |
skesa | 1 | {bio} |
- snap-aligner | 1 | {bio} |
spaced | 1 | {bio} |
- srf | 1 | {bio-dev} |
stacks | 1 | {bio} |
stringtie | 1 | {bio} |
suitename | 1 | {bio} |
@@ -319,5 +317,5 @@ Last-Update: Mon, 09 Mar 2020 01:42:03 +0000
tnseq-transit | 0 | {bio} |
trim-galore | 0 | {bio} |
varna | 0 | {bio} |
-(347 rows)
+(345 rows)
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Mon, 09 Mar 2020 01:42:03 +0000
+Last-Update: Mon, 09 Mar 2020 13:42:03 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -254,6 +254,7 @@ Last-Update: Mon, 09 Mar 2020 01:42:03 +0000
python-pysam | 938092 | normal | python-pysam: Python2 removal in sid/bullseye
python-ruffus | 841073 | wishlist | python-ruffus: Needs 18 GB of RAM to build
python-tinyalign | 952603 | normal | python-tinyalign: license of buildwheels.sh is CC0
+ python-tinyalign | 953395 | serious | python-tinyalign: FTBFS due to various build dependency issues
q2-demux | 950933 | normal | q2-demux: FTBFS with pandas 1.0: test failures
q2templates | 950931 | normal | q2templates: FTBFS with pandas 1.0: test failures
q2-types | 950932 | normal | q2-types: FTBFS with pandas 1.0: test failures
@@ -292,5 +293,5 @@ Last-Update: Mon, 09 Mar 2020 01:42:03 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(193 rows)
+(194 rows)
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/acea6a044f1680c4a1cddfc796b3c73424b839e1
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/acea6a044f1680c4a1cddfc796b3c73424b839e1
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