[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille
gitlab at salsa.debian.org
Thu Mar 12 13:44:40 GMT 2020
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
bbfd18d0 by Andreas Tille at 2020-03-12T13:44:36+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,41 +1,41 @@
-Last-Update: Thu, 12 Mar 2020 01:42:03 +0000
+Last-Update: Thu, 12 Mar 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
- dcmtk | 182 | {imaging} |
- orthanc | 103 | {practice,imaging} |
- gdcm | 46 | {imaging-dev} |
- dcm2niix | 42 | {imaging} |
- orthanc-wsi | 40 | {oncology,laboratory,imaging,his,practice} |
- amide | 38 | {imaging} |
- dicom3tools | 32 | {imaging} |
- dicomscope | 32 | {imaging} |
+ dcmtk | 178 | {imaging} |
+ orthanc | 101 | {practice,imaging} |
+ gdcm | 45 | {imaging-dev} |
+ dcm2niix | 43 | {imaging} |
+ orthanc-wsi | 39 | {oncology,laboratory,imaging,his,practice} |
+ amide | 36 | {imaging} |
+ dicom3tools | 31 | {imaging} |
+ dicomscope | 30 | {imaging} |
htsjdk | 29 | {bio-dev} |
- gdcm | 22 | {imaging} |
+ gdcm | 21 | {imaging} |
pixelmed | 18 | {imaging} |
gnumed-server | 17 | {practice} |
+ invesalius | 17 | {imaging} |
king | 17 | {imaging,typesetting} |
- invesalius | 16 | {imaging} |
minc-tools | 16 | {imaging} |
ngs-sdk | 16 | {bio-dev} |
- adun.app | 14 | {bio} |
- openslide | 14 | {imaging} |
+ openslide | 15 | {imaging} |
+ adun.app | 13 | {bio} |
biojava-live | 13 | {bio-dev} |
- insighttoolkit4 | 13 | {imaging-dev} |
- vtk-dicom | 13 | {imaging} |
+ insighttoolkit4 | 12 | {imaging-dev} |
jebl2 | 12 | {bio-dev} |
- mia | 12 | {imaging} |
- biosig4c++ | 11 | {imaging,physics} |
+ vtk-dicom | 12 | {imaging} |
+ mia | 11 | {imaging} |
plastimatch | 11 | {imaging} |
tree-puzzle | 11 | {bio,bio-phylogeny,cloud} |
+ biosig4c++ | 10 | {imaging,physics} |
gdcm | 10 | {imaging-dev} |
librg-utils-perl | 10 | {bio} |
ncbi-entrez-direct | 10 | {bio} |
- ngs-sdk | 10 | {bio-dev} |
psychopy | 10 | {psychology} |
fastlink | 9 | {cloud,bio} |
melting | 9 | {bio,cloud} |
ncbi-seg | 9 | {bio} |
+ ngs-sdk | 9 | {bio-dev} |
norsp | 9 | {bio} |
sortmerna | 9 | {bio} |
staden | 9 | {bio} |
@@ -49,7 +49,8 @@ Last-Update: Thu, 12 Mar 2020 01:42:03 +0000
radiant | 8 | {bio} |
sigma-align | 8 | {bio-phylogeny,bio,cloud} |
ampliconnoise | 7 | {cloud,bio} |
- dicompyler | 7 | {oncology} |
+ ecopcr | 7 | {bio} |
+ obitools | 7 | {bio} |
phyutility | 7 | {bio,cloud} |
piler | 7 | {bio} |
rdp-readseq | 7 | {bio} |
@@ -61,8 +62,8 @@ Last-Update: Thu, 12 Mar 2020 01:42:03 +0000
bio-tradis | 6 | {bio-dev,bio} |
dazzdb | 6 | {bio} |
diamond-aligner | 6 | {bio} |
+ dicompyler | 6 | {oncology} |
ea-utils | 6 | {bio} |
- ecopcr | 6 | {bio} |
edtsurf | 6 | {bio} |
embassy-domainatrix | 6 | {cloud,bio} |
embassy-domalign | 6 | {bio,cloud} |
@@ -70,10 +71,8 @@ Last-Update: Thu, 12 Mar 2020 01:42:03 +0000
freecontact | 6 | {bio,cloud} |
gasic | 6 | {cloud,bio} |
idba | 6 | {bio,cloud} |
- king-probe | 6 | {bio} |
libdivsufsort | 6 | {bio-dev} |
libsbml | 6 | {bio-dev} |
- obitools | 6 | {bio} |
paml | 6 | {bio} |
paraclu | 6 | {cloud,bio} |
perm | 6 | {cloud,bio} |
@@ -81,7 +80,6 @@ Last-Update: Thu, 12 Mar 2020 01:42:03 +0000
prime-phylo | 6 | {cloud,bio} |
probabel | 6 | {bio,cloud} |
saint | 6 | {bio} |
- salmon | 6 | {bio} |
seqsero | 6 | {bio} |
squizz | 6 | {bio,cloud} |
zalign | 6 | {cloud,bio} |
@@ -97,6 +95,7 @@ Last-Update: Thu, 12 Mar 2020 01:42:03 +0000
indelible | 5 | {bio} |
ipig | 5 | {bio} |
jellyfish1 | 5 | {bio} |
+ king-probe | 5 | {bio} |
lagan | 5 | {bio} |
libncl | 5 | {bio} |
lucy | 5 | {bio} |
@@ -113,6 +112,7 @@ Last-Update: Thu, 12 Mar 2020 01:42:03 +0000
pscan-chip | 5 | {bio} |
pscan-tfbs | 5 | {bio} |
pymia | 5 | {imaging-dev} |
+ salmon | 5 | {bio} |
scythe | 5 | {bio} |
seer | 5 | {bio} |
sickle | 5 | {bio} |
@@ -130,7 +130,6 @@ Last-Update: Thu, 12 Mar 2020 01:42:03 +0000
elastix | 4 | {imaging} |
elph | 4 | {bio} |
lamarc | 4 | {bio} |
- libgff | 4 | {bio-dev} |
libpal-java | 4 | {bio-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
logol | 4 | {bio} |
@@ -172,6 +171,7 @@ Last-Update: Thu, 12 Mar 2020 01:42:03 +0000
ghmm | 3 | {bio} |
hinge | 3 | {bio} |
jmodeltest | 3 | {bio-phylogeny,bio} |
+ libgff | 3 | {bio-dev} |
libminc | 3 | {imaging-dev} |
nanook | 3 | {bio} |
orthanc-dicomweb | 3 | {imaging} |
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Thu, 12 Mar 2020 01:42:03 +0000
+Last-Update: Thu, 12 Mar 2020 13:42:04 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -7,7 +7,7 @@ Last-Update: Thu, 12 Mar 2020 01:42:03 +0000
atropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31+00
baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
beast2-mcmc | 2.6.0 | 2.6.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-07-31 13:08:02+00
- biobambam2 | 2.0.153 | 2.0.157+ds | Andreas Tille | Andreas Tille | 2020-02-05 13:20:41+00
+ biobambam2 | 2.0.153 | 2.0.158+ds | Andreas Tille | Andreas Tille | 2020-02-05 13:20:41+00
biojava-live | 1.7.1 | 1.9.3 | Andreas Tille,Olivier Sallou,Steffen Moeller | Andreas Tille | 2018-11-12 15:49:23+00
biomaj3 | 3.1.14 | 3.1.16 | Olivier Sallou | Olivier Sallou | 2020-02-08 18:22:42+00
biomaj3-core | 3.0.19 | 3.0.22 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:23+00
@@ -41,7 +41,7 @@ Last-Update: Thu, 12 Mar 2020 01:42:03 +0000
libedlib | 1.2.4 | 1.2.6 | Andreas Tille | Andreas Tille | 2019-08-19 00:34:56+00
libgclib | 0.11.4 | 0.11.7 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00
libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200310.2bd973e | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
- libmaus2 | 2.0.698 | 2.0.708 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-02-05 10:04:12+00
+ libmaus2 | 2.0.698 | 2.0.709 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-02-05 10:04:12+00
libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
libundead | 1.0.10 | 1.1.1 | Andreas Tille | Andreas Tille | 2019-09-13 21:06:10+00
metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
@@ -112,7 +112,6 @@ Last-Update: Thu, 12 Mar 2020 01:42:03 +0000
ariba | 951944 | serious | ariba: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p 3.7 returned exit code 13
bamtools | 865130 | important | reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz'
bcbio | 928076 | important | bcbio: Workflows not ready for non-developers to depend on.
- bcbio | 953642 | serious | bcbio: build-depends on removed tophat
bcftools | 819617 | important | FTBFS: any-i386 - floating point idiosyncracies
bcftools | 860682 | important | bcftools: FTBFS on i386: Test failures
bcftools | 860704 | important | python-pysam: FTBFS on i386: build-dependency not installable: bcftools (>= 1.3.1)
@@ -123,6 +122,7 @@ Last-Update: Thu, 12 Mar 2020 01:42:03 +0000
biomaj3 | 950914 | minor | python3-biomaj3: Depends on python-influxdb wich ftbs, patch to remove dependency
bwa | 942447 | normal | Build bwa on ppc64el
camp | 900181 | normal | camp: FTBFS on 32bit big endian: check metaclass->function("f4").call(object, camp::Args(1, 4, 15)).to<unsigned long>() == 20 has failed
+ clearcut | 953675 | important | clearcut fails on armhf with glibc 2.31 and linux 4.15 (bad errno handling)
clonalorigin | 884475 | wishlist | clonalorigin: FTBFS on alpha: tests time out
dawg | 903886 | important | dawg: Test suite fails
dcmtk | 637687 | wishlist | libdcmtk2-dev: Dcmtk headers cause compile failure
@@ -243,7 +243,6 @@ Last-Update: Thu, 12 Mar 2020 01:42:03 +0000
prokka | 924128 | normal | prokka: creates world writable directory tree /var/lib/prokka/*
psychopy | 730810 | normal | psychopy: Movie support suboptimal
psychopy | 829424 | normal | psychopy: ioHub uses inappropriate PID file location
- psychopy | 937330 | normal | psychopy: Python2 removal in sid/bullseye
psychopy | 953052 | important | psychopy: python2 dependencies
psychopy | 953053 | important | psychopy: missing python3 dependencies
pynast | 937488 | normal | pynast: Python2 removal in sid/bullseye
@@ -297,5 +296,5 @@ Last-Update: Thu, 12 Mar 2020 01:42:03 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(193 rows)
+(192 rows)
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/bbfd18d014ba0c5aba70b9f7fde0c9b5039e1d7d
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/bbfd18d014ba0c5aba70b9f7fde0c9b5039e1d7d
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