[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille
gitlab at salsa.debian.org
Sat Mar 14 13:44:22 GMT 2020
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
6e97065b by Andreas Tille at 2020-03-14T13:44:18+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,21 +1,21 @@
-Last-Update: Sat, 14 Mar 2020 01:42:04 +0000
+Last-Update: Sat, 14 Mar 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
- dcmtk | 177 | {imaging} |
- orthanc | 101 | {practice,imaging} |
- gdcm | 44 | {imaging-dev} |
+ dcmtk | 179 | {imaging} |
+ orthanc | 102 | {practice,imaging} |
+ gdcm | 46 | {imaging-dev} |
dcm2niix | 43 | {imaging} |
orthanc-wsi | 39 | {oncology,laboratory,imaging,his,practice} |
amide | 36 | {imaging} |
- dicom3tools | 31 | {imaging} |
- dicomscope | 31 | {imaging} |
+ dicomscope | 32 | {imaging} |
+ dicom3tools | 30 | {imaging} |
htsjdk | 28 | {bio-dev} |
gdcm | 21 | {imaging} |
- pixelmed | 18 | {imaging} |
- gnumed-server | 17 | {practice} |
- invesalius | 17 | {imaging} |
+ pixelmed | 19 | {imaging} |
+ gnumed-server | 18 | {practice} |
king | 17 | {imaging,typesetting} |
+ invesalius | 16 | {imaging} |
minc-tools | 16 | {imaging} |
ngs-sdk | 16 | {bio-dev} |
openslide | 15 | {imaging} |
@@ -23,16 +23,16 @@ Last-Update: Sat, 14 Mar 2020 01:42:04 +0000
biojava-live | 13 | {bio-dev} |
insighttoolkit4 | 13 | {imaging-dev} |
jebl2 | 12 | {bio-dev} |
+ plastimatch | 12 | {imaging} |
+ psychopy | 12 | {psychology} |
vtk-dicom | 12 | {imaging} |
mia | 11 | {imaging} |
- plastimatch | 11 | {imaging} |
- psychopy | 11 | {psychology} |
tree-puzzle | 11 | {bio,bio-phylogeny,cloud} |
biosig4c++ | 10 | {imaging,physics} |
- gdcm | 10 | {imaging-dev} |
librg-utils-perl | 10 | {bio} |
ncbi-entrez-direct | 10 | {bio} |
fastlink | 9 | {cloud,bio} |
+ gdcm | 9 | {imaging-dev} |
melting | 9 | {bio,cloud} |
ncbi-seg | 9 | {bio} |
norsp | 9 | {bio} |
@@ -40,7 +40,6 @@ Last-Update: Sat, 14 Mar 2020 01:42:04 +0000
staden | 9 | {bio} |
arden | 8 | {cloud,bio} |
diamond-aligner | 8 | {bio} |
- jaligner | 8 | {bio} |
maqview | 8 | {bio} |
mauve-aligner | 8 | {bio} |
mipe | 8 | {bio,cloud} |
@@ -52,6 +51,7 @@ Last-Update: Sat, 14 Mar 2020 01:42:04 +0000
cgview | 7 | {bio} |
ea-utils | 7 | {bio} |
ecopcr | 7 | {bio} |
+ jaligner | 7 | {bio} |
obitools | 7 | {bio} |
paml | 7 | {bio} |
phyutility | 7 | {bio,cloud} |
@@ -91,6 +91,7 @@ Last-Update: Sat, 14 Mar 2020 01:42:04 +0000
bppsuite | 5 | {bio} |
codonw | 5 | {bio} |
daligner | 5 | {bio-ngs,bio} |
+ elastix | 5 | {imaging} |
estscan | 5 | {bio} |
fitgcp | 5 | {bio,cloud} |
harvest-tools | 5 | {bio} |
@@ -128,7 +129,6 @@ Last-Update: Sat, 14 Mar 2020 01:42:04 +0000
clonalorigin | 4 | {bio} |
cluster3 | 4 | {bio} |
dascrubber | 4 | {bio} |
- elastix | 4 | {imaging} |
elph | 4 | {bio} |
freebayes | 4 | {bio} |
lamarc | 4 | {bio} |
@@ -167,9 +167,11 @@ Last-Update: Sat, 14 Mar 2020 01:42:04 +0000
getdata | 3 | {bio} |
ghmm | 3 | {bio} |
hinge | 3 | {bio} |
+ hunspell-en-med | 3 | {tools} |
jmodeltest | 3 | {bio-phylogeny,bio} |
libgff | 3 | {bio-dev} |
libminc | 3 | {imaging-dev} |
+ mrs | 3 | {bio} |
nanook | 3 | {bio} |
openslide | 3 | {imaging-dev} |
orthanc-dicomweb | 3 | {imaging} |
@@ -198,12 +200,9 @@ Last-Update: Sat, 14 Mar 2020 01:42:04 +0000
acedb | 2 | {bio,cloud} |
biosig4c++ | 2 | {physics,imaging-dev} |
ctn | 2 | {imaging-dev} |
- cufflinks | 2 | {bio,cloud} |
- hunspell-en-med | 2 | {tools} |
igor | 2 | {bio} |
libsmithwaterman | 2 | {bio} |
metaphlan2 | 2 | {bio} |
- mrs | 2 | {bio} |
opencfu | 2 | {laboratory} |
pal2nal | 2 | {bio} |
qrisk2 | 2 | {practice} |
@@ -220,6 +219,7 @@ Last-Update: Sat, 14 Mar 2020 01:42:04 +0000
volpack | 2 | {imaging-dev} |
biosig4c++ | 1 | {physics,imaging-dev} |
blimps | 1 | {bio} |
+ cufflinks | 1 | {bio,cloud} |
edflib | 1 | {imaging-dev} |
embassy-phylip | 1 | {cloud,bio} |
emmax | 1 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sat, 14 Mar 2020 01:42:04 +0000
+Last-Update: Sat, 14 Mar 2020 13:42:04 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -49,8 +49,10 @@ Last-Update: Sat, 14 Mar 2020 01:42:04 +0000
mmseqs2 | 10-6d92c | 11-e1a1c | Shayan Doust | Andreas Tille | 2020-02-11 22:38:56+00
mothur | 1.42.1 | 1.43.0 | Andreas Tille,Steffen Moeller,Tomasz Buchert | Andreas Tille | 2019-08-01 19:09:05+00
mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00
+ mypy | 0.761 | 0.770 | Michael R. Crusoe | Michael R. Crusoe | 2020-01-01 22:05:46+00
nanopolish | 0.11.3 | 0.12.0 | Andreas Tille | Steffen Moeller | 2019-12-22 12:49:21+00
ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
+ ncbi-entrez-direct | 12.0.20190816 | 13.5.20200306 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00
ncbi-vdb | 2.10.3 | 2.10.4 | Andreas Tille | Andreas Tille | 2020-02-24 21:12:17+00
ngs-sdk | 2.10.2 | 2.10.4 | Andreas Tille,Olivier Sallou,Vincent Danjean | Michael R. Crusoe | 2020-02-17 15:36:45+00
nibabel | 3.0.1 | 3.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-03 14:58:34+00
@@ -58,7 +60,7 @@ Last-Update: Sat, 14 Mar 2020 01:42:04 +0000
pbgenomicconsensus | 2.3.2 | 2.3.3 | Andreas Tille | Liubov Chuprikova | 2019-04-07 15:33:36+00
pbseqlib | 5.3.3 | 5.3.4 | Andreas Tille | Andreas Tille | 2020-01-29 15:04:33+00
picard-tools | 2.18.25 | 2.22.0 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille | 2019-02-04 09:20:37+00
- plink2 | 2.00~a3-200217 | 200308 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
+ plink2 | 2.00~a3-200217 | 200311 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
prokka | 1.14.5 | 1.14.6 | Andreas Tille,Michael R. Crusoe | Michael R. Crusoe | 2019-12-04 11:00:31+00
pydicom | 1.4.1 | 1.4.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-01-23 12:34:53+00
python-avro | 1.9.1 | 1.9.2 | Afif Elghraoui | Andreas Tille | 2019-12-18 08:41:55+00
@@ -99,7 +101,7 @@ Last-Update: Sat, 14 Mar 2020 01:42:04 +0000
unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(97 rows)
+(99 rows)
source | id | severity | title
@@ -149,6 +151,7 @@ Last-Update: Sat, 14 Mar 2020 01:42:04 +0000
dicom3tools | 815628 | normal | dicom3tools: dcintro man page missing
dicomscope | 927089 | normal | dicomscope-doc: error merging doc-base files: format pdf already defined
discosnp | 942404 | serious | discosnp: flaky autopkgtest: discoRes_k_31_c_auto_D_100_P_1_b_0_coherent.fa: No such file or directory
+ drmaa | 953832 | serious | drmaa: autopkgtest failure: RuntimeError: Could not find drmaa library
ea-utils | 846858 | normal | src:ea-utils: New version available
ea-utils | 862118 | wishlist | ea-utils: New upstream version available
elastix | 909280 | wishlist | elastix: New upstream available
@@ -244,6 +247,7 @@ Last-Update: Sat, 14 Mar 2020 01:42:04 +0000
psychopy | 829424 | normal | psychopy: ioHub uses inappropriate PID file location
psychopy | 953052 | important | psychopy: python2 dependencies
psychopy | 953053 | important | psychopy: missing python3 dependencies
+ psychopy | 953846 | serious | psychopy: ships /usr/lib/python3/dist-packages/packaging/__init__.py
pynast | 937488 | normal | pynast: Python2 removal in sid/bullseye
pynast | 948081 | serious | pynast build depends on and recommends the removed blast2 transitional package
python-biom-format | 820060 | normal | python-biom-format: broken on big-endian architectures
@@ -282,6 +286,7 @@ Last-Update: Sat, 14 Mar 2020 01:42:04 +0000
sofa-framework | 735099 | normal | sofa-framework: FTBFS on sparc, powerpc (and ia64)
sofa-framework | 875184 | serious | [sofa-framework] Future Qt4 removal from Buster
spades | 853113 | normal | spades: Fails to build with unhelpful error message in a "low" memory machine
+ spdlog | 953855 | normal | libspdlog-dev: tries to include file that doesn't exist
sprai | 943280 | normal | sprai: Python2 removal in sid/bullseye
sra-sdk | 943231 | normal | sra-sdk: Python2 removal in sid/bullseye
sra-sdk | 952623 | serious | sra-sdk: FTBFS: ld: /usr/lib/x86_64-linux-gnu/libncbi-vdb.so: undefined reference to `vdb_mbedtls_entropy_init'
@@ -295,5 +300,5 @@ Last-Update: Sat, 14 Mar 2020 01:42:04 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(191 rows)
+(194 rows)
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/6e97065b023bdfc7e0132e1e01da80044dc635af
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/6e97065b023bdfc7e0132e1e01da80044dc635af
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