[med-svn] [Git][med-team/community/helper-scripts][master] automatic update
Andreas Tille
gitlab at salsa.debian.org
Sun Mar 15 13:44:25 GMT 2020
Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
a108c306 by Andreas Tille at 2020-03-15T13:44:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,31 +1,31 @@
-Last-Update: Sun, 15 Mar 2020 01:42:04 +0000
+Last-Update: Sun, 15 Mar 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
dcmtk | 179 | {imaging} |
orthanc | 102 | {practice,imaging} |
- gdcm | 46 | {imaging-dev} |
+ gdcm | 47 | {imaging-dev} |
dcm2niix | 43 | {imaging} |
orthanc-wsi | 39 | {oncology,laboratory,imaging,his,practice} |
amide | 36 | {imaging} |
- dicomscope | 32 | {imaging} |
- dicom3tools | 30 | {imaging} |
- htsjdk | 28 | {bio-dev} |
- gdcm | 21 | {imaging} |
- pixelmed | 19 | {imaging} |
+ dicomscope | 33 | {imaging} |
+ htsjdk | 32 | {bio-dev} |
+ dicom3tools | 29 | {imaging} |
+ gdcm | 20 | {imaging} |
gnumed-server | 18 | {practice} |
+ pixelmed | 18 | {imaging} |
king | 17 | {imaging,typesetting} |
invesalius | 16 | {imaging} |
minc-tools | 16 | {imaging} |
ngs-sdk | 16 | {bio-dev} |
+ insighttoolkit4 | 15 | {imaging-dev} |
openslide | 15 | {imaging} |
adun.app | 13 | {bio} |
biojava-live | 13 | {bio-dev} |
- insighttoolkit4 | 13 | {imaging-dev} |
- jebl2 | 12 | {bio-dev} |
- plastimatch | 12 | {imaging} |
+ plastimatch | 13 | {imaging} |
psychopy | 12 | {psychology} |
vtk-dicom | 12 | {imaging} |
+ jebl2 | 11 | {bio-dev} |
mia | 11 | {imaging} |
tree-puzzle | 11 | {bio,bio-phylogeny,cloud} |
biosig4c++ | 10 | {imaging,physics} |
@@ -76,6 +76,7 @@ Last-Update: Sun, 15 Mar 2020 01:42:04 +0000
libsbml | 6 | {bio-dev} |
paraclu | 6 | {cloud,bio} |
perm | 6 | {cloud,bio} |
+ poretools | 6 | {bio} |
predictprotein | 6 | {bio} |
prime-phylo | 6 | {cloud,bio} |
probabel | 6 | {bio,cloud} |
@@ -109,11 +110,9 @@ Last-Update: Sun, 15 Mar 2020 01:42:04 +0000
orthanc-webviewer | 5 | {imaging} |
phast | 5 | {bio} |
placnet | 5 | {bio} |
- poretools | 5 | {bio} |
proalign | 5 | {bio-phylogeny,bio} |
pscan-chip | 5 | {bio} |
pymia | 5 | {imaging-dev} |
- salmon | 5 | {bio} |
scythe | 5 | {bio} |
seer | 5 | {bio} |
sickle | 5 | {bio} |
@@ -145,6 +144,7 @@ Last-Update: Sun, 15 Mar 2020 01:42:04 +0000
rdp-classifier | 4 | {bio} |
relion | 4 | {bio} |
repeatmasker-recon | 4 | {bio} |
+ salmon | 4 | {bio} |
seqtools | 4 | {bio} |
sprai | 4 | {bio} |
tracetuner | 4 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Sun, 15 Mar 2020 01:42:04 +0000
+Last-Update: Sun, 15 Mar 2020 13:42:04 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -6,6 +6,7 @@ Last-Update: Sun, 15 Mar 2020 01:42:04 +0000
artemis | 17.0.1 | 18.1.0 | Andreas Tille | Andreas Tille | 2019-02-08 11:19:24+00
atropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31+00
baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
+ beagle | 5.1-191125 | 200313 | Dylan Aïssi | Dylan Aïssi | 2019-12-14 18:34:10+00
beast2-mcmc | 2.6.0 | 2.6.2 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-07-31 13:08:02+00
biobambam2 | 2.0.153 | 2.0.158+ds | Andreas Tille | Andreas Tille | 2020-02-05 13:20:41+00
biojava-live | 1.7.1 | 1.9.3 | Andreas Tille,Olivier Sallou,Steffen Moeller | Andreas Tille | 2018-11-12 15:49:23+00
@@ -27,10 +28,12 @@ Last-Update: Sun, 15 Mar 2020 01:42:04 +0000
fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00
gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200118.1dc23ff | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00
gdcm | 3.0.4 | 3.0.5 | Gert Wollny,Sébastien Jodogne,Steve M. Robbins | Gert Wollny | 2019-11-07 11:49:02+00
+ gmap | 2019-09-12 | 2020-03-12 | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman | Steffen Moeller | 2019-12-30 12:37:15+00
hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
htsjdk | 2.18.2 | 2.21.3 | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean | Andreas Tille | 2019-03-01 22:19:40+00
hyphy | 2.5.1 | 2.5.5 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00
igdiscover | 0.11 | 0.12.2 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
+ igraph | 0.8.0 | 0.8.1 | Andreas Tille | Andreas Tille | 2020-03-14 20:10:56+00
igv | 2.4.17 | 2.8.1 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
imagej | 1.52r | 1.52t | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
ismrmrd | 1.4.0 | 1.4.1 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-26 07:49:20+00
@@ -41,7 +44,7 @@ Last-Update: Sun, 15 Mar 2020 01:42:04 +0000
libbioparser-dev | 2.0.1 | 2.1.2 | Andreas Tille | Andreas Tille | 2019-07-15 13:35:45+00
libedlib | 1.2.4 | 1.2.6 | Andreas Tille | Andreas Tille | 2019-08-19 00:34:56+00
libgclib | 0.11.4 | 0.11.7 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00
- libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200310.2bd973e | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
+ libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200313.db8cd8f | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
libmaus2 | 2.0.698 | 2.0.709 | Andreas Tille,Steffen Moeller | Andreas Tille | 2020-02-05 10:04:12+00
libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
libundead | 1.0.10 | 1.1.1 | Andreas Tille | Andreas Tille | 2019-09-13 21:06:10+00
@@ -50,7 +53,7 @@ Last-Update: Sun, 15 Mar 2020 01:42:04 +0000
mothur | 1.42.1 | 1.43.0 | Andreas Tille,Steffen Moeller,Tomasz Buchert | Andreas Tille | 2019-08-01 19:09:05+00
mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00
mypy | 0.761 | 0.770 | Michael R. Crusoe | Michael R. Crusoe | 2020-01-01 22:05:46+00
- nanopolish | 0.11.3 | 0.12.0 | Andreas Tille | Steffen Moeller | 2019-12-22 12:49:21+00
+ nanopolish | 0.11.3 | 0.12.1 | Andreas Tille | Steffen Moeller | 2019-12-22 12:49:21+00
ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
ncbi-entrez-direct | 12.0.20190816 | 13.5.20200306 | Aaron M. Ucko | Aaron M. Ucko | 2020-02-03 03:53:53+00
ncbi-vdb | 2.10.3 | 2.10.4 | Andreas Tille | Andreas Tille | 2020-02-24 21:12:17+00
@@ -101,7 +104,7 @@ Last-Update: Sun, 15 Mar 2020 01:42:04 +0000
unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(99 rows)
+(102 rows)
source | id | severity | title
@@ -113,6 +116,7 @@ Last-Update: Sun, 15 Mar 2020 01:42:04 +0000
arb | 926017 | minor | arb: Typo in package description: "website links unreachable, description outdated"
ariba | 951944 | serious | ariba: FTBFS: dh_auto_test: error: pybuild --test --test-nose -i python{version} -p 3.7 returned exit code 13
bamtools | 865130 | important | reapr FTBFS on big endian: Error sampling from files '00.Sample/fragCov.gz', '00.assembly.fa.gc.gz'
+ bamtools | 953939 | important | bamtools: autopkgtest failure: times out on arm64
bcbio | 928076 | important | bcbio: Workflows not ready for non-developers to depend on.
bcftools | 819617 | important | FTBFS: any-i386 - floating point idiosyncracies
bcftools | 860682 | important | bcftools: FTBFS on i386: Test failures
@@ -176,6 +180,7 @@ Last-Update: Sun, 15 Mar 2020 01:42:04 +0000
htsjdk | 920588 | normal | htsjdk: Autopkgtest for htsjdk
htslib | 922860 | normal | Packages do not contain the upstream README file
idba | 909716 | minor | idba: Please provide autopkgtest
+ igraph | 953941 | serious | igraph - Incomplete debian/copyright
igv | 940606 | normal | new upstream (2.6.3)
insighttoolkit4 | 724711 | wishlist | insighttoolkit4: Drops architecture support
insighttoolkit4 | 759794 | wishlist | insighttoolkit4: FTBFS on amd64 with ENOSPC
@@ -302,5 +307,5 @@ Last-Update: Sun, 15 Mar 2020 01:42:04 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(196 rows)
+(198 rows)
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a108c3063190e57660ae0b65f696877a6109ed54
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/a108c3063190e57660ae0b65f696877a6109ed54
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200315/12b65696/attachment-0001.html>
More information about the debian-med-commit
mailing list