Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
b648404d by Andreas Tille at 2020-03-17T13:44:38+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,231 +1,238 @@
-Last-Update: Tue, 17 Mar 2020 01:42:04 +0000
+Last-Update: Tue, 17 Mar 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
- dcmtk | 182 | {imaging} |
+ dcmtk | 178 | {imaging} |
orthanc | 104 | {practice,imaging} |
- gdcm | 46 | {imaging-dev} |
+ gdcm | 43 | {imaging-dev} |
orthanc-wsi | 41 | {oncology,laboratory,imaging,his,practice} |
- amide | 36 | {imaging} |
- dicomscope | 33 | {imaging} |
+ amide | 35 | {imaging} |
htsjdk | 33 | {bio-dev} |
- dcm2niix | 32 | {imaging} |
- dicom3tools | 29 | {imaging} |
- gdcm | 19 | {imaging} |
- gnumed-server | 19 | {practice} |
+ dicomscope | 31 | {imaging} |
+ dcm2niix | 29 | {imaging} |
+ dicom3tools | 26 | {imaging} |
+ gnumed-server | 20 | {practice} |
pixelmed | 18 | {imaging} |
- king | 17 | {imaging,typesetting} |
- ngs-sdk | 17 | {bio-dev} |
+ gdcm | 17 | {imaging} |
minc-tools | 16 | {imaging} |
+ ngs-sdk | 16 | {bio-dev} |
invesalius | 15 | {imaging} |
+ king | 15 | {imaging,typesetting} |
openslide | 15 | {imaging} |
+ adun.app | 14 | {bio} |
insighttoolkit4 | 14 | {imaging-dev} |
- adun.app | 13 | {bio} |
+ psychopy | 14 | {psychology} |
biojava-live | 13 | {bio-dev} |
- vtk-dicom | 13 | {imaging} |
+ tree-puzzle | 13 | {bio,bio-phylogeny,cloud} |
plastimatch | 12 | {imaging} |
- psychopy | 12 | {psychology} |
+ vtk-dicom | 12 | {imaging} |
jebl2 | 11 | {bio-dev} |
mia | 11 | {imaging} |
- tree-puzzle | 11 | {bio,bio-phylogeny,cloud} |
biosig4c++ | 10 | {imaging,physics} |
+ fastlink | 10 | {cloud,bio} |
librg-utils-perl | 10 | {bio} |
+ melting | 10 | {bio,cloud} |
ncbi-entrez-direct | 10 | {bio} |
- fastlink | 9 | {cloud,bio} |
- melting | 9 | {bio,cloud} |
+ norsp | 10 | {bio} |
+ sortmerna | 10 | {bio} |
+ staden | 10 | {bio} |
+ maqview | 9 | {bio} |
+ mipe | 9 | {bio,cloud} |
ncbi-seg | 9 | {bio} |
- norsp | 9 | {bio} |
- sortmerna | 9 | {bio} |
- staden | 9 | {bio} |
+ radiant | 9 | {bio} |
+ sigma-align | 9 | {bio-phylogeny,bio,cloud} |
+ ampliconnoise | 8 | {cloud,bio} |
arden | 8 | {cloud,bio} |
diamond-aligner | 8 | {bio} |
+ ea-utils | 8 | {bio} |
+ ecopcr | 8 | {bio} |
gdcm | 8 | {imaging-dev} |
- maqview | 8 | {bio} |
mauve-aligner | 8 | {bio} |
- mipe | 8 | {bio,cloud} |
neobio | 8 | {cloud,bio} |
ngs-sdk | 8 | {bio-dev} |
- radiant | 8 | {bio} |
- sigma-align | 8 | {bio-phylogeny,bio,cloud} |
- ampliconnoise | 7 | {cloud,bio} |
- cgview | 7 | {bio} |
- ea-utils | 7 | {bio} |
- ecopcr | 7 | {bio} |
+ phyutility | 8 | {bio,cloud} |
+ piler | 8 | {bio} |
+ sibsim4 | 8 | {cloud,bio} |
+ anfo | 7 | {cloud,bio} |
+ biomaj3-cli | 7 | {cloud} |
+ bio-tradis | 7 | {bio-dev,bio} |
+ dazzdb | 7 | {bio} |
+ edtsurf | 7 | {bio} |
+ embassy-domainatrix | 7 | {cloud,bio} |
+ embassy-domalign | 7 | {bio,cloud} |
+ embassy-domsearch | 7 | {bio,cloud} |
+ freecontact | 7 | {bio,cloud} |
+ idba | 7 | {bio,cloud} |
jaligner | 7 | {bio} |
obitools | 7 | {bio} |
paml | 7 | {bio} |
- phyutility | 7 | {bio,cloud} |
- piler | 7 | {bio} |
- sibsim4 | 7 | {cloud,bio} |
+ paraclu | 7 | {cloud,bio} |
+ perm | 7 | {cloud,bio} |
+ poretools | 7 | {bio} |
+ prime-phylo | 7 | {cloud,bio} |
+ probabel | 7 | {bio,cloud} |
+ saint | 7 | {bio} |
+ seqsero | 7 | {bio} |
+ squizz | 7 | {bio,cloud} |
+ transtermhp | 7 | {bio} |
treeview | 7 | {bio-phylogeny,bio} |
- anfo | 6 | {cloud,bio} |
+ zalign | 7 | {cloud,bio} |
+ assemblytics | 6 | {bio} |
beast2-mcmc | 6 | {bio} |
- biomaj3-cli | 6 | {cloud} |
- bio-tradis | 6 | {bio-dev,bio} |
- dazzdb | 6 | {bio} |
+ bppsuite | 6 | {bio} |
+ cgview | 6 | {bio} |
+ codonw | 6 | {bio} |
+ daligner | 6 | {bio-ngs,bio} |
dicompyler | 6 | {oncology} |
- edtsurf | 6 | {bio} |
- embassy-domainatrix | 6 | {cloud,bio} |
- embassy-domalign | 6 | {bio,cloud} |
- embassy-domsearch | 6 | {bio,cloud} |
- freecontact | 6 | {bio,cloud} |
+ elastix | 6 | {imaging} |
+ estscan | 6 | {bio} |
+ freebayes | 6 | {bio} |
gasic | 6 | {cloud,bio} |
- idba | 6 | {bio,cloud} |
+ harvest-tools | 6 | {bio} |
+ indelible | 6 | {bio} |
+ ipig | 6 | {bio} |
king-probe | 6 | {bio} |
+ lagan | 6 | {bio} |
libdivsufsort | 6 | {bio-dev} |
+ libncl | 6 | {bio} |
libsbml | 6 | {bio-dev} |
+ lucy | 6 | {bio} |
+ mapsembler2 | 6 | {bio,cloud} |
+ microbegps | 6 | {bio} |
+ mlv-smile | 6 | {cloud,bio} |
+ murasaki | 6 | {bio} |
orthanc-webviewer | 6 | {imaging} |
- paraclu | 6 | {cloud,bio} |
- perm | 6 | {cloud,bio} |
- poretools | 6 | {bio} |
+ phast | 6 | {bio} |
+ placnet | 6 | {bio} |
predictprotein | 6 | {bio} |
- prime-phylo | 6 | {cloud,bio} |
- probabel | 6 | {bio,cloud} |
+ proalign | 6 | {bio-phylogeny,bio} |
+ pscan-chip | 6 | {bio} |
pscan-tfbs | 6 | {bio} |
rdp-readseq | 6 | {bio} |
- saint | 6 | {bio} |
- seqsero | 6 | {bio} |
- squizz | 6 | {bio,cloud} |
- transtermhp | 6 | {bio} |
- zalign | 6 | {cloud,bio} |
+ scythe | 6 | {bio} |
+ seer | 6 | {bio} |
+ sickle | 6 | {bio} |
+ spread-phy | 6 | {bio-phylogeny,bio} |
+ vsearch | 6 | {bio} |
+ abacas | 5 | {bio} |
alter-sequence-alignment | 5 | {bio} |
- assemblytics | 5 | {bio} |
- bppsuite | 5 | {bio} |
- codonw | 5 | {bio} |
- daligner | 5 | {bio-ngs,bio} |
- elastix | 5 | {imaging} |
- estscan | 5 | {bio} |
+ baitfisher | 5 | {bio} |
+ beads | 5 | {bio} |
+ bitseq | 5 | {bio} |
+ canu | 5 | {bio} |
+ centrifuge | 5 | {bio} |
+ clonalorigin | 5 | {bio} |
+ dascrubber | 5 | {bio} |
+ elph | 5 | {bio} |
fitgcp | 5 | {bio,cloud} |
- freebayes | 5 | {bio} |
- harvest-tools | 5 | {bio} |
- indelible | 5 | {bio} |
- ipig | 5 | {bio} |
jellyfish1 | 5 | {bio} |
- lagan | 5 | {bio} |
- libncl | 5 | {bio} |
- lucy | 5 | {bio} |
- mapsembler2 | 5 | {bio,cloud} |
+ lamarc | 5 | {bio} |
+ librdp-taxonomy-tree-java | 5 | {bio-dev} |
+ maffilter | 5 | {bio} |
mhap | 5 | {bio-ngs,bio} |
- microbegps | 5 | {bio} |
- mlv-smile | 5 | {cloud,bio} |
- murasaki | 5 | {bio} |
- phast | 5 | {bio} |
- placnet | 5 | {bio} |
- proalign | 5 | {bio-phylogeny,bio} |
- pscan-chip | 5 | {bio} |
+ mptp | 5 | {bio} |
pymia | 5 | {imaging-dev} |
- scythe | 5 | {bio} |
- seer | 5 | {bio} |
- sickle | 5 | {bio} |
- spread-phy | 5 | {bio-phylogeny,bio} |
- abacas | 4 | {bio} |
- baitfisher | 4 | {bio} |
- beads | 4 | {bio} |
+ quorum | 5 | {bio} |
+ rdp-classifier | 5 | {bio} |
+ relion | 5 | {bio} |
+ repeatmasker-recon | 5 | {bio} |
+ salmon | 5 | {bio} |
+ seqtools | 5 | {bio} |
+ sprai | 5 | {bio} |
+ tracetuner | 5 | {bio} |
+ transrate-tools | 5 | {bio} |
+ velvetoptimiser | 5 | {bio} |
+ andi | 4 | {bio} |
+ bandage | 4 | {bio} |
beast-mcmc | 4 | {bio-phylogeny,bio} |
- bitseq | 4 | {bio} |
- brig | 4 | {bio} |
- canu | 4 | {bio} |
- centrifuge | 4 | {bio} |
- clonalorigin | 4 | {bio} |
+ biomaj3-daemon | 4 | {bio} |
+ bio-rainbow | 4 | {bio} |
+ clonalframeml | 4 | {bio} |
cluster3 | 4 | {bio} |
- dascrubber | 4 | {bio} |
- elph | 4 | {bio} |
- lamarc | 4 | {bio} |
+ delly | 4 | {bio} |
+ dindel | 4 | {bio} |
+ dwgsim | 4 | {bio} |
+ fastml | 4 | {bio} |
+ fsm-lite | 4 | {bio} |
+ gatb-core | 4 | {bio} |
+ ghmm | 4 | {bio} |
+ hinge | 4 | {bio} |
libpal-java | 4 | {bio-dev} |
- librdp-taxonomy-tree-java | 4 | {bio-dev} |
- logol | 4 | {bio} |
- maffilter | 4 | {bio} |
- mptp | 4 | {bio} |
+ patman | 4 | {bio} |
pbdagcon | 4 | {bio} |
phipack | 4 | {bio} |
+ phybin | 4 | {bio} |
+ pilon | 4 | {bio} |
plasmidseeker | 4 | {bio} |
- quorum | 4 | {bio} |
+ prottest | 4 | {bio-phylogeny,bio} |
+ qcumber | 4 | {bio} |
rambo-k | 4 | {bio} |
- rdp-classifier | 4 | {bio} |
- relion | 4 | {bio} |
- repeatmasker-recon | 4 | {bio} |
- salmon | 4 | {bio} |
- seqtools | 4 | {bio} |
- sprai | 4 | {bio} |
- tracetuner | 4 | {bio} |
- transrate-tools | 4 | {bio} |
- velvetoptimiser | 4 | {bio} |
- vsearch | 4 | {bio} |
- andi | 3 | {bio} |
- bandage | 3 | {bio} |
+ rampler | 4 | {bio} |
+ rdp-alignment | 4 | {bio} |
+ roguenarok | 4 | {bio} |
+ rtax | 4 | {cloud,bio} |
+ runcircos-gui | 4 | {bio} |
+ samblaster | 4 | {bio} |
+ segemehl | 4 | {bio} |
+ sga | 4 | {bio} |
+ snap-aligner | 4 | {bio} |
+ soapaligner | 4 | {bio} |
+ soapsnp | 4 | {bio} |
+ stacks | 4 | {bio} |
+ sumatra | 4 | {bio} |
+ sweed | 4 | {bio} |
+ tvc | 4 | {bio} |
+ yaha | 4 | {bio} |
bart-view | 3 | {imaging} |
- biomaj3-daemon | 3 | {bio} |
- bio-rainbow | 3 | {bio} |
blasr | 3 | {bio-ngs,bio} |
- clonalframeml | 3 | {bio} |
- delly | 3 | {bio} |
- dindel | 3 | {bio} |
- dwgsim | 3 | {bio} |
- fastml | 3 | {bio} |
- fsm-lite | 3 | {bio} |
- gatb-core | 3 | {bio} |
+ brig | 3 | {bio} |
getdata | 3 | {bio} |
- ghmm | 3 | {bio} |
- hinge | 3 | {bio} |
hunspell-en-med | 3 | {tools} |
+ igor | 3 | {bio} |
jmodeltest | 3 | {bio-phylogeny,bio} |
libgff | 3 | {bio-dev} |
libminc | 3 | {imaging-dev} |
+ libsmithwaterman | 3 | {bio} |
+ logol | 3 | {bio} |
+ metaphlan2 | 3 | {bio} |
mrs | 3 | {bio} |
nanook | 3 | {bio} |
openslide | 3 | {imaging-dev} |
orthanc-dicomweb | 3 | {imaging} |
parsnp | 3 | {bio} |
- patman | 3 | {bio} |
- phybin | 3 | {bio} |
- pilon | 3 | {bio} |
- prottest | 3 | {bio-phylogeny,bio} |
- qcumber | 3 | {bio} |
qrisk2 | 3 | {practice} |
- rampler | 3 | {bio} |
- rdp-alignment | 3 | {bio} |
- roguenarok | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
- runcircos-gui | 3 | {bio} |
- samblaster | 3 | {bio} |
- segemehl | 3 | {bio} |
- sga | 3 | {bio} |
- snap-aligner | 3 | {bio} |
- soapaligner | 3 | {bio} |
- soapsnp | 3 | {bio} |
- stacks | 3 | {bio} |
- sumatra | 3 | {bio} |
- sweed | 3 | {bio} |
- tvc | 3 | {bio} |
- yaha | 3 | {bio} |
+ scrm | 3 | {bio} |
+ seqmagick | 3 | {bio} |
+ spaced | 3 | {bio} |
+ suitename | 3 | {bio} |
+ sumaclust | 3 | {bio} |
+ surankco | 3 | {bio} |
acedb | 2 | {bio,cloud} |
biosig4c++ | 2 | {physics,imaging-dev} |
ctn | 2 | {imaging-dev} |
- igor | 2 | {bio} |
- libsmithwaterman | 2 | {bio} |
- metaphlan2 | 2 | {bio} |
+ cufflinks | 2 | {bio,cloud} |
+ kma | 2 | {bio} |
+ kmerresistance | 2 | {bio} |
opencfu | 2 | {laboratory} |
+ orthanc-mysql | 2 | {imaging} |
pal2nal | 2 | {bio} |
+ pilercr | 2 | {bio} |
relion | 2 | {bio} |
- scrm | 2 | {bio} |
- seqmagick | 2 | {bio} |
- spaced | 2 | {bio} |
+ skesa | 2 | {bio} |
srf | 2 | {bio-dev} |
- suitename | 2 | {bio} |
- sumaclust | 2 | {bio} |
- surankco | 2 | {bio} |
+ stringtie | 2 | {bio} |
+ tnseq-transit | 2 | {bio} |
trace2dbest | 2 | {bio} |
tree-puzzle | 2 | {cloud,bio-phylogeny,bio} |
+ varscan | 2 | {bio} |
volpack | 2 | {imaging-dev} |
+ atropos | 1 | {bio} |
biosig4c++ | 1 | {physics,imaging-dev} |
blimps | 1 | {bio} |
- cufflinks | 1 | {bio,cloud} |
edflib | 1 | {imaging-dev} |
embassy-phylip | 1 | {cloud,bio} |
emmax | 1 | {bio} |
fasta3 | 1 | {bio} |
- kma | 1 | {bio} |
- kmerresistance | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
libhmsbeagle | 1 | {bio-dev} |
@@ -233,22 +240,14 @@ Last-Update: Tue, 17 Mar 2020 01:42:04 +0000
libvistaio | 1 | {imaging-dev} |
maxflow | 1 | {imaging-dev} |
mencal | 1 | {tools} |
- ngs-sdk | 1 | {bio-dev} |
nutsqlite | 1 | {tools} |
opensurgsim | 1 | {imaging-dev} |
- orthanc-mysql | 1 | {imaging} |
orthanc-postgresql | 1 | {imaging} |
papyrus | 1 | {imaging-dev} |
- pilercr | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
sift | 1 | {bio} |
- skesa | 1 | {bio} |
- stringtie | 1 | {bio} |
thesias | 1 | {bio} |
- tnseq-transit | 1 | {bio} |
- varscan | 1 | {bio} |
vtk-dicom | 1 | {imaging-dev} |
- atropos | 0 | {bio} |
bambamc | 0 | {bio-dev} |
biobambam2 | 0 | {bio,bio-dev} |
biojava4-live | 0 | {bio-dev} |
@@ -294,6 +293,7 @@ Last-Update: Tue, 17 Mar 2020 01:42:04 +0000
mssstest | 0 | {tools} |
murasaki | 0 | {bio} |
ncbi-vdb | 0 | {bio-dev} |
+ ngs-sdk | 0 | {bio-dev} |
orthanc-imagej | 0 | {imaging} |
oscar | 0 | {tools,data,practice} |
pbcopper | 0 | {bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Tue, 17 Mar 2020 01:42:04 +0000
+Last-Update: Tue, 17 Mar 2020 13:42:04 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -22,6 +22,7 @@ Last-Update: Tue, 17 Mar 2020 01:42:04 +0000
dcm2niix | 1.0.20181125 | 1.0.20190902 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:04:52+00
delly | 0.8.2 | 0.8.3 | Steffen Moeller | Andrius Merkys | 2020-02-06 13:05:04+00
ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00
+ edfbrowser | 1.72 | 1.73 | Andreas Tille | Andreas Tille | 2020-02-14 15:02:37+00
elastix | 4.9.0 | 5.0.0 | Gert Wollny,Steve M. Robbins | Andreas Tille | 2019-01-15 11:50:11+00
epigrass | 2.5.0 | 2.6.0 | Andreas Tille,Thorsten Alteholz | Andreas Tille | 2019-09-13 19:48:50+00
falcon | 1.8.8 | 2.1.4 | Afif Elghraoui | Afif Elghraoui | 2017-12-16 08:49:13+00
@@ -105,7 +106,7 @@ Last-Update: Tue, 17 Mar 2020 01:42:04 +0000
unanimity | 3.3.0 | 4.2.0 | Afif Elghraoui,Andreas Tille | Adrian Bunk | 2019-02-06 07:34:42+00
vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(103 rows)
+(104 rows)
source | id | severity | title
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b648404d51ff6e7e603aa548bd10bcd3c2af9426
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b648404d51ff6e7e603aa548bd10bcd3c2af9426
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