[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille gitlab at salsa.debian.org
Wed Mar 18 13:45:00 GMT 2020



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
c4bb84dc by Andreas Tille at 2020-03-18T13:44:54+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,246 +1,247 @@
-Last-Update: Wed, 18 Mar 2020 01:42:03 +0000
+Last-Update: Wed, 18 Mar 2020 13:42:03 +0000
 
  Source                        | Vote   | Tasks                                      |                                 Tags                                 
 -------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    178 | {imaging}                                  | 
- orthanc                       |    104 | {practice,imaging}                         | 
- gdcm                          |     43 | {imaging-dev}                              | 
- orthanc-wsi                   |     41 | {oncology,laboratory,imaging,his,practice} | 
- amide                         |     35 | {imaging}                                  | 
- htsjdk                        |     33 | {bio-dev}                                  | 
+ dcmtk                         |    176 | {imaging}                                  | 
+ orthanc                       |    103 | {practice,imaging}                         | 
+ gdcm                          |     44 | {imaging-dev}                              | 
+ orthanc-wsi                   |     42 | {his,imaging,oncology,practice,laboratory} | 
+ htsjdk                        |     36 | {bio-dev}                                  | 
+ amide                         |     34 | {imaging}                                  | 
  dicomscope                    |     31 | {imaging}                                  | 
  dcm2niix                      |     29 | {imaging}                                  | 
  dicom3tools                   |     26 | {imaging}                                  | 
  gnumed-server                 |     20 | {practice}                                 | 
  pixelmed                      |     18 | {imaging}                                  | 
  gdcm                          |     17 | {imaging}                                  | 
+ adun.app                      |     16 | {bio}                                      | 
+ biojava-live                  |     16 | {bio-dev}                                  | 
+ king                          |     16 | {typesetting,imaging}                      | 
  minc-tools                    |     16 | {imaging}                                  | 
  ngs-sdk                       |     16 | {bio-dev}                                  | 
+ insighttoolkit4               |     15 | {imaging-dev}                              | 
  invesalius                    |     15 | {imaging}                                  | 
- king                          |     15 | {imaging,typesetting}                      | 
  openslide                     |     15 | {imaging}                                  | 
- adun.app                      |     14 | {bio}                                      | 
- insighttoolkit4               |     14 | {imaging-dev}                              | 
  psychopy                      |     14 | {psychology}                               | 
- biojava-live                  |     13 | {bio-dev}                                  | 
- tree-puzzle                   |     13 | {bio,bio-phylogeny,cloud}                  | 
+ tree-puzzle                   |     14 | {bio,cloud,bio-phylogeny}                  | 
+ jebl2                         |     13 | {bio-dev}                                  | 
+ vtk-dicom                     |     13 | {imaging}                                  | 
+ librg-utils-perl              |     12 | {bio}                                      | 
+ ncbi-entrez-direct            |     12 | {bio}                                      | 
+ norsp                         |     12 | {bio}                                      | 
  plastimatch                   |     12 | {imaging}                                  | 
- vtk-dicom                     |     12 | {imaging}                                  | 
- jebl2                         |     11 | {bio-dev}                                  | 
- mia                           |     11 | {imaging}                                  | 
+ fastlink                      |     11 | {bio,cloud}                                | 
+ melting                       |     11 | {bio,cloud}                                | 
+ mipe                          |     11 | {cloud,bio}                                | 
+ ncbi-seg                      |     11 | {bio}                                      | 
+ radiant                       |     11 | {bio}                                      | 
+ staden                        |     11 | {bio}                                      | 
+ ampliconnoise                 |     10 | {bio,cloud}                                | 
+ arden                         |     10 | {bio,cloud}                                | 
  biosig4c++                    |     10 | {imaging,physics}                          | 
- fastlink                      |     10 | {cloud,bio}                                | 
- librg-utils-perl              |     10 | {bio}                                      | 
- melting                       |     10 | {bio,cloud}                                | 
- ncbi-entrez-direct            |     10 | {bio}                                      | 
- norsp                         |     10 | {bio}                                      | 
+ diamond-aligner               |     10 | {bio}                                      | 
+ maqview                       |     10 | {bio}                                      | 
+ mia                           |     10 | {imaging}                                  | 
+ phyutility                    |     10 | {cloud,bio}                                | 
+ sigma-align                   |     10 | {bio-phylogeny,cloud,bio}                  | 
  sortmerna                     |     10 | {bio}                                      | 
- staden                        |     10 | {bio}                                      | 
- maqview                       |      9 | {bio}                                      | 
- mipe                          |      9 | {bio,cloud}                                | 
- ncbi-seg                      |      9 | {bio}                                      | 
- radiant                       |      9 | {bio}                                      | 
- sigma-align                   |      9 | {bio-phylogeny,bio,cloud}                  | 
- ampliconnoise                 |      8 | {cloud,bio}                                | 
- arden                         |      8 | {cloud,bio}                                | 
- diamond-aligner               |      8 | {bio}                                      | 
+ anfo                          |      9 | {cloud,bio}                                | 
+ dazzdb                        |      9 | {bio}                                      | 
+ ecopcr                        |      9 | {bio}                                      | 
+ edtsurf                       |      9 | {bio}                                      | 
+ embassy-domainatrix           |      9 | {cloud,bio}                                | 
+ embassy-domalign              |      9 | {cloud,bio}                                | 
+ embassy-domsearch             |      9 | {cloud,bio}                                | 
+ freecontact                   |      9 | {cloud,bio}                                | 
+ idba                          |      9 | {bio,cloud}                                | 
+ jaligner                      |      9 | {bio}                                      | 
+ mauve-aligner                 |      9 | {bio}                                      | 
+ neobio                        |      9 | {cloud,bio}                                | 
+ ngs-sdk                       |      9 | {bio-dev}                                  | 
+ obitools                      |      9 | {bio}                                      | 
+ paml                          |      9 | {bio}                                      | 
+ paraclu                       |      9 | {cloud,bio}                                | 
+ perm                          |      9 | {cloud,bio}                                | 
+ piler                         |      9 | {bio}                                      | 
+ prime-phylo                   |      9 | {cloud,bio}                                | 
+ probabel                      |      9 | {cloud,bio}                                | 
+ sibsim4                       |      9 | {bio,cloud}                                | 
+ biomaj3-cli                   |      8 | {cloud}                                    | 
+ bio-tradis                    |      8 | {bio-dev,bio}                              | 
+ bppsuite                      |      8 | {bio}                                      | 
+ cgview                        |      8 | {bio}                                      | 
+ codonw                        |      8 | {bio}                                      | 
+ daligner                      |      8 | {bio-ngs,bio}                              | 
  ea-utils                      |      8 | {bio}                                      | 
- ecopcr                        |      8 | {bio}                                      | 
+ estscan                       |      8 | {bio}                                      | 
+ gasic                         |      8 | {bio,cloud}                                | 
  gdcm                          |      8 | {imaging-dev}                              | 
- mauve-aligner                 |      8 | {bio}                                      | 
- neobio                        |      8 | {cloud,bio}                                | 
- ngs-sdk                       |      8 | {bio-dev}                                  | 
- phyutility                    |      8 | {bio,cloud}                                | 
- piler                         |      8 | {bio}                                      | 
- sibsim4                       |      8 | {cloud,bio}                                | 
- anfo                          |      7 | {cloud,bio}                                | 
- biomaj3-cli                   |      7 | {cloud}                                    | 
- bio-tradis                    |      7 | {bio-dev,bio}                              | 
- dazzdb                        |      7 | {bio}                                      | 
- edtsurf                       |      7 | {bio}                                      | 
- embassy-domainatrix           |      7 | {cloud,bio}                                | 
- embassy-domalign              |      7 | {bio,cloud}                                | 
- embassy-domsearch             |      7 | {bio,cloud}                                | 
- freecontact                   |      7 | {bio,cloud}                                | 
- idba                          |      7 | {bio,cloud}                                | 
- jaligner                      |      7 | {bio}                                      | 
- obitools                      |      7 | {bio}                                      | 
- paml                          |      7 | {bio}                                      | 
- paraclu                       |      7 | {cloud,bio}                                | 
- perm                          |      7 | {cloud,bio}                                | 
- poretools                     |      7 | {bio}                                      | 
- prime-phylo                   |      7 | {cloud,bio}                                | 
- probabel                      |      7 | {bio,cloud}                                | 
- saint                         |      7 | {bio}                                      | 
- seqsero                       |      7 | {bio}                                      | 
- squizz                        |      7 | {bio,cloud}                                | 
- transtermhp                   |      7 | {bio}                                      | 
- treeview                      |      7 | {bio-phylogeny,bio}                        | 
- zalign                        |      7 | {cloud,bio}                                | 
- assemblytics                  |      6 | {bio}                                      | 
- beast2-mcmc                   |      6 | {bio}                                      | 
- bppsuite                      |      6 | {bio}                                      | 
- cgview                        |      6 | {bio}                                      | 
- codonw                        |      6 | {bio}                                      | 
- daligner                      |      6 | {bio-ngs,bio}                              | 
+ ipig                          |      8 | {bio}                                      | 
+ king-probe                    |      8 | {bio}                                      | 
+ lagan                         |      8 | {bio}                                      | 
+ lucy                          |      8 | {bio}                                      | 
+ mapsembler2                   |      8 | {cloud,bio}                                | 
+ microbegps                    |      8 | {bio}                                      | 
+ mlv-smile                     |      8 | {cloud,bio}                                | 
+ phast                         |      8 | {bio}                                      | 
+ placnet                       |      8 | {bio}                                      | 
+ poretools                     |      8 | {bio}                                      | 
+ predictprotein                |      8 | {bio}                                      | 
+ proalign                      |      8 | {bio,bio-phylogeny}                        | 
+ saint                         |      8 | {bio}                                      | 
+ seqsero                       |      8 | {bio}                                      | 
+ squizz                        |      8 | {bio,cloud}                                | 
+ transtermhp                   |      8 | {bio}                                      | 
+ treeview                      |      8 | {bio-phylogeny,bio}                        | 
+ zalign                        |      8 | {bio,cloud}                                | 
+ abacas                        |      7 | {bio}                                      | 
+ alter-sequence-alignment      |      7 | {bio}                                      | 
+ assemblytics                  |      7 | {bio}                                      | 
+ baitfisher                    |      7 | {bio}                                      | 
+ beast2-mcmc                   |      7 | {bio}                                      | 
+ bitseq                        |      7 | {bio}                                      | 
+ canu                          |      7 | {bio}                                      | 
+ centrifuge                    |      7 | {bio}                                      | 
+ dascrubber                    |      7 | {bio}                                      | 
+ elph                          |      7 | {bio}                                      | 
+ fitgcp                        |      7 | {bio,cloud}                                | 
+ freebayes                     |      7 | {bio}                                      | 
+ harvest-tools                 |      7 | {bio}                                      | 
+ indelible                     |      7 | {bio}                                      | 
+ lamarc                        |      7 | {bio}                                      | 
+ libncl                        |      7 | {bio}                                      | 
+ mhap                          |      7 | {bio,bio-ngs}                              | 
+ pscan-chip                    |      7 | {bio}                                      | 
+ pscan-tfbs                    |      7 | {bio}                                      | 
+ rdp-readseq                   |      7 | {bio}                                      | 
+ scythe                        |      7 | {bio}                                      | 
+ seqtools                      |      7 | {bio}                                      | 
+ sickle                        |      7 | {bio}                                      | 
+ spread-phy                    |      7 | {bio-phylogeny,bio}                        | 
+ vsearch                       |      7 | {bio}                                      | 
+ andi                          |      6 | {bio}                                      | 
+ bandage                       |      6 | {bio}                                      | 
+ beads                         |      6 | {bio}                                      | 
+ bio-rainbow                   |      6 | {bio}                                      | 
+ clonalframeml                 |      6 | {bio}                                      | 
+ clonalorigin                  |      6 | {bio}                                      | 
  dicompyler                    |      6 | {oncology}                                 | 
- elastix                       |      6 | {imaging}                                  | 
- estscan                       |      6 | {bio}                                      | 
- freebayes                     |      6 | {bio}                                      | 
- gasic                         |      6 | {cloud,bio}                                | 
- harvest-tools                 |      6 | {bio}                                      | 
- indelible                     |      6 | {bio}                                      | 
- ipig                          |      6 | {bio}                                      | 
- king-probe                    |      6 | {bio}                                      | 
- lagan                         |      6 | {bio}                                      | 
+ dwgsim                        |      6 | {bio}                                      | 
+ gatb-core                     |      6 | {bio}                                      | 
+ ghmm                          |      6 | {bio}                                      | 
+ hinge                         |      6 | {bio}                                      | 
+ jellyfish1                    |      6 | {bio}                                      | 
  libdivsufsort                 |      6 | {bio-dev}                                  | 
- libncl                        |      6 | {bio}                                      | 
+ libpal-java                   |      6 | {bio-dev}                                  | 
+ librdp-taxonomy-tree-java     |      6 | {bio-dev}                                  | 
  libsbml                       |      6 | {bio-dev}                                  | 
- lucy                          |      6 | {bio}                                      | 
- mapsembler2                   |      6 | {bio,cloud}                                | 
- microbegps                    |      6 | {bio}                                      | 
- mlv-smile                     |      6 | {cloud,bio}                                | 
+ maffilter                     |      6 | {bio}                                      | 
+ mptp                          |      6 | {bio}                                      | 
  murasaki                      |      6 | {bio}                                      | 
  orthanc-webviewer             |      6 | {imaging}                                  | 
- phast                         |      6 | {bio}                                      | 
- placnet                       |      6 | {bio}                                      | 
- predictprotein                |      6 | {bio}                                      | 
- proalign                      |      6 | {bio-phylogeny,bio}                        | 
- pscan-chip                    |      6 | {bio}                                      | 
- pscan-tfbs                    |      6 | {bio}                                      | 
- rdp-readseq                   |      6 | {bio}                                      | 
- scythe                        |      6 | {bio}                                      | 
+ patman                        |      6 | {bio}                                      | 
+ phipack                       |      6 | {bio}                                      | 
+ plasmidseeker                 |      6 | {bio}                                      | 
+ prottest                      |      6 | {bio-phylogeny,bio}                        | 
+ quorum                        |      6 | {bio}                                      | 
+ rdp-classifier                |      6 | {bio}                                      | 
+ repeatmasker-recon            |      6 | {bio}                                      | 
  seer                          |      6 | {bio}                                      | 
- sickle                        |      6 | {bio}                                      | 
- spread-phy                    |      6 | {bio-phylogeny,bio}                        | 
- vsearch                       |      6 | {bio}                                      | 
- abacas                        |      5 | {bio}                                      | 
- alter-sequence-alignment      |      5 | {bio}                                      | 
- baitfisher                    |      5 | {bio}                                      | 
- beads                         |      5 | {bio}                                      | 
- bitseq                        |      5 | {bio}                                      | 
- canu                          |      5 | {bio}                                      | 
- centrifuge                    |      5 | {bio}                                      | 
- clonalorigin                  |      5 | {bio}                                      | 
- dascrubber                    |      5 | {bio}                                      | 
- elph                          |      5 | {bio}                                      | 
- fitgcp                        |      5 | {bio,cloud}                                | 
- jellyfish1                    |      5 | {bio}                                      | 
- lamarc                        |      5 | {bio}                                      | 
- librdp-taxonomy-tree-java     |      5 | {bio-dev}                                  | 
- maffilter                     |      5 | {bio}                                      | 
- mhap                          |      5 | {bio-ngs,bio}                              | 
- mptp                          |      5 | {bio}                                      | 
+ seqtools                      |      6 | {bio}                                      | 
+ sprai                         |      6 | {bio}                                      | 
+ tracetuner                    |      6 | {bio}                                      | 
+ velvetoptimiser               |      6 | {bio}                                      | 
+ beast-mcmc                    |      5 | {bio-phylogeny,bio}                        | 
+ biomaj3-daemon                |      5 | {bio}                                      | 
+ brig                          |      5 | {bio}                                      | 
+ cluster3                      |      5 | {bio}                                      | 
+ delly                         |      5 | {bio}                                      | 
+ dindel                        |      5 | {bio}                                      | 
+ elastix                       |      5 | {imaging}                                  | 
+ fastml                        |      5 | {bio}                                      | 
+ fsm-lite                      |      5 | {bio}                                      | 
+ jmodeltest                    |      5 | {bio,bio-phylogeny}                        | 
+ logol                         |      5 | {bio}                                      | 
+ pbdagcon                      |      5 | {bio}                                      | 
+ phybin                        |      5 | {bio}                                      | 
+ pilon                         |      5 | {bio}                                      | 
  pymia                         |      5 | {imaging-dev}                              | 
- quorum                        |      5 | {bio}                                      | 
- rdp-classifier                |      5 | {bio}                                      | 
+ rambo-k                       |      5 | {bio}                                      | 
+ rampler                       |      5 | {bio}                                      | 
+ rdp-alignment                 |      5 | {bio}                                      | 
  relion                        |      5 | {bio}                                      | 
- repeatmasker-recon            |      5 | {bio}                                      | 
+ roguenarok                    |      5 | {bio}                                      | 
+ rtax                          |      5 | {cloud,bio}                                | 
+ runcircos-gui                 |      5 | {bio}                                      | 
  salmon                        |      5 | {bio}                                      | 
- seqtools                      |      5 | {bio}                                      | 
- sprai                         |      5 | {bio}                                      | 
- tracetuner                    |      5 | {bio}                                      | 
+ samblaster                    |      5 | {bio}                                      | 
+ soapaligner                   |      5 | {bio}                                      | 
+ soapsnp                       |      5 | {bio}                                      | 
+ sumatra                       |      5 | {bio}                                      | 
+ sweed                         |      5 | {bio}                                      | 
  transrate-tools               |      5 | {bio}                                      | 
- velvetoptimiser               |      5 | {bio}                                      | 
- andi                          |      4 | {bio}                                      | 
- bandage                       |      4 | {bio}                                      | 
- beast-mcmc                    |      4 | {bio-phylogeny,bio}                        | 
- biomaj3-daemon                |      4 | {bio}                                      | 
- bio-rainbow                   |      4 | {bio}                                      | 
- clonalframeml                 |      4 | {bio}                                      | 
- cluster3                      |      4 | {bio}                                      | 
- delly                         |      4 | {bio}                                      | 
- dindel                        |      4 | {bio}                                      | 
- dwgsim                        |      4 | {bio}                                      | 
- fastml                        |      4 | {bio}                                      | 
- fsm-lite                      |      4 | {bio}                                      | 
- gatb-core                     |      4 | {bio}                                      | 
- ghmm                          |      4 | {bio}                                      | 
- hinge                         |      4 | {bio}                                      | 
- libpal-java                   |      4 | {bio-dev}                                  | 
- patman                        |      4 | {bio}                                      | 
- pbdagcon                      |      4 | {bio}                                      | 
- phipack                       |      4 | {bio}                                      | 
- phybin                        |      4 | {bio}                                      | 
- pilon                         |      4 | {bio}                                      | 
- plasmidseeker                 |      4 | {bio}                                      | 
- prottest                      |      4 | {bio-phylogeny,bio}                        | 
+ tvc                           |      5 | {bio}                                      | 
+ yaha                          |      5 | {bio}                                      | 
+ blasr                         |      4 | {bio-ngs,bio}                              | 
+ igor                          |      4 | {bio}                                      | 
+ metaphlan2                    |      4 | {bio}                                      | 
+ parsnp                        |      4 | {bio}                                      | 
  qcumber                       |      4 | {bio}                                      | 
- rambo-k                       |      4 | {bio}                                      | 
- rampler                       |      4 | {bio}                                      | 
- rdp-alignment                 |      4 | {bio}                                      | 
- roguenarok                    |      4 | {bio}                                      | 
- rtax                          |      4 | {cloud,bio}                                | 
- runcircos-gui                 |      4 | {bio}                                      | 
- samblaster                    |      4 | {bio}                                      | 
  segemehl                      |      4 | {bio}                                      | 
+ seqmagick                     |      4 | {bio}                                      | 
  sga                           |      4 | {bio}                                      | 
  snap-aligner                  |      4 | {bio}                                      | 
- soapaligner                   |      4 | {bio}                                      | 
- soapsnp                       |      4 | {bio}                                      | 
  stacks                        |      4 | {bio}                                      | 
- sumatra                       |      4 | {bio}                                      | 
- sweed                         |      4 | {bio}                                      | 
- tvc                           |      4 | {bio}                                      | 
- yaha                          |      4 | {bio}                                      | 
+ suitename                     |      4 | {bio}                                      | 
+ sumaclust                     |      4 | {bio}                                      | 
+ surankco                      |      4 | {bio}                                      | 
  bart-view                     |      3 | {imaging}                                  | 
- blasr                         |      3 | {bio-ngs,bio}                              | 
- brig                          |      3 | {bio}                                      | 
  getdata                       |      3 | {bio}                                      | 
  hunspell-en-med               |      3 | {tools}                                    | 
- igor                          |      3 | {bio}                                      | 
- jmodeltest                    |      3 | {bio-phylogeny,bio}                        | 
+ kma                           |      3 | {bio}                                      | 
+ kmerresistance                |      3 | {bio}                                      | 
  libgff                        |      3 | {bio-dev}                                  | 
  libminc                       |      3 | {imaging-dev}                              | 
  libsmithwaterman              |      3 | {bio}                                      | 
- logol                         |      3 | {bio}                                      | 
- metaphlan2                    |      3 | {bio}                                      | 
  mrs                           |      3 | {bio}                                      | 
  nanook                        |      3 | {bio}                                      | 
  openslide                     |      3 | {imaging-dev}                              | 
  orthanc-dicomweb              |      3 | {imaging}                                  | 
- parsnp                        |      3 | {bio}                                      | 
  qrisk2                        |      3 | {practice}                                 | 
+ relion                        |      3 | {bio}                                      | 
  scrm                          |      3 | {bio}                                      | 
- seqmagick                     |      3 | {bio}                                      | 
+ skesa                         |      3 | {bio}                                      | 
  spaced                        |      3 | {bio}                                      | 
- suitename                     |      3 | {bio}                                      | 
- sumaclust                     |      3 | {bio}                                      | 
- surankco                      |      3 | {bio}                                      | 
+ tnseq-transit                 |      3 | {bio}                                      | 
+ varscan                       |      3 | {bio}                                      | 
  acedb                         |      2 | {bio,cloud}                                | 
  biosig4c++                    |      2 | {physics,imaging-dev}                      | 
  ctn                           |      2 | {imaging-dev}                              | 
- cufflinks                     |      2 | {bio,cloud}                                | 
- kma                           |      2 | {bio}                                      | 
- kmerresistance                |      2 | {bio}                                      | 
+ cufflinks                     |      2 | {cloud,bio}                                | 
  opencfu                       |      2 | {laboratory}                               | 
  orthanc-mysql                 |      2 | {imaging}                                  | 
  pal2nal                       |      2 | {bio}                                      | 
  pilercr                       |      2 | {bio}                                      | 
- relion                        |      2 | {bio}                                      | 
- skesa                         |      2 | {bio}                                      | 
  srf                           |      2 | {bio-dev}                                  | 
  stringtie                     |      2 | {bio}                                      | 
- tnseq-transit                 |      2 | {bio}                                      | 
  trace2dbest                   |      2 | {bio}                                      | 
- tree-puzzle                   |      2 | {cloud,bio-phylogeny,bio}                  | 
- varscan                       |      2 | {bio}                                      | 
+ tree-puzzle                   |      2 | {cloud,bio,bio-phylogeny}                  | 
  volpack                       |      2 | {imaging-dev}                              | 
  atropos                       |      1 | {bio}                                      | 
- biosig4c++                    |      1 | {physics,imaging-dev}                      | 
+ biosig4c++                    |      1 | {imaging-dev,physics}                      | 
  blimps                        |      1 | {bio}                                      | 
  edflib                        |      1 | {imaging-dev}                              | 
- embassy-phylip                |      1 | {cloud,bio}                                | 
+ embassy-phylip                |      1 | {bio,cloud}                                | 
  emmax                         |      1 | {bio}                                      | 
  fasta3                        |      1 | {bio}                                      | 
  libbio-mage-utils-perl        |      1 | {bio-dev}                                  | 
+ libchado-perl                 |      1 | {bio-dev}                                  | 
  libctapimkt                   |      1 | {practice}                                 | 
  libhmsbeagle                  |      1 | {bio-dev}                                  | 
  libsmithwaterman              |      1 | {bio-dev}                                  | 
  libvistaio                    |      1 | {imaging-dev}                              | 
  maxflow                       |      1 | {imaging-dev}                              | 
  mencal                        |      1 | {tools}                                    | 
- nutsqlite                     |      1 | {tools}                                    | 
  opensurgsim                   |      1 | {imaging-dev}                              | 
  orthanc-postgresql            |      1 | {imaging}                                  | 
  papyrus                       |      1 | {imaging-dev}                              | 
@@ -249,7 +250,7 @@ Last-Update: Wed, 18 Mar 2020 01:42:03 +0000
  thesias                       |      1 | {bio}                                      | 
  vtk-dicom                     |      1 | {imaging-dev}                              | 
  bambamc                       |      0 | {bio-dev}                                  | 
- biobambam2                    |      0 | {bio,bio-dev}                              | 
+ biobambam2                    |      0 | {bio-dev,bio}                              | 
  biojava4-live                 |      0 | {bio-dev}                                  | 
  biosig4c++                    |      0 | {physics}                                  | 
  biosyntax                     |      0 | {bio}                                      | 
@@ -268,7 +269,6 @@ Last-Update: Wed, 18 Mar 2020 01:42:03 +0000
  libbpp-raa                    |      0 | {bio-dev}                                  | 
  libbpp-seq                    |      0 | {bio-dev}                                  | 
  libbpp-seq-omics              |      0 | {bio-dev}                                  | 
- libchado-perl                 |      0 | {bio-dev}                                  | 
  libdisorder                   |      0 | {bio-dev}                                  | 
  libgenome                     |      0 | {bio-dev}                                  | 
  libgkarrays                   |      0 | {bio-dev}                                  | 
@@ -294,12 +294,13 @@ Last-Update: Wed, 18 Mar 2020 01:42:03 +0000
  murasaki                      |      0 | {bio}                                      | 
  ncbi-vdb                      |      0 | {bio-dev}                                  | 
  ngs-sdk                       |      0 | {bio-dev}                                  | 
+ nutsqlite                     |      0 | {tools}                                    | 
  orthanc-imagej                |      0 | {imaging}                                  | 
- oscar                         |      0 | {tools,data,practice}                      | 
+ oscar                         |      0 | {data,tools,practice}                      | 
  pbcopper                      |      0 | {bio-dev}                                  | 
  pbseqlib                      |      0 | {bio-dev}                                  | 
- python-deeptools              |      0 | {bio-dev,bio}                              | 
- python-py2bit                 |      0 | {bio,bio-dev}                              | 
+ python-deeptools              |      0 | {bio,bio-dev}                              | 
+ python-py2bit                 |      0 | {bio-dev,bio}                              | 
  python-pyani                  |      0 | {bio-dev}                                  | 
  relion                        |      0 | {bio}                                      | 
  relion                        |      0 | {bio-dev}                                  | 
@@ -314,5 +315,5 @@ Last-Update: Wed, 18 Mar 2020 01:42:03 +0000
  spaln                         |      0 | {bio}                                      | 
  trim-galore                   |      0 | {bio}                                      | 
  varna                         |      0 | {bio}                                      | 
-(342 rows)
+(343 rows)
 


=====================================
outdated_med-packages.txt
=====================================
@@ -1,108 +1,108 @@
-Last-Update: Wed, 18 Mar 2020 01:42:03 +0000
+Last-Update: Wed, 18 Mar 2020 13:42:03 +0000
 
- source                        |             version             |        upstream_version         |                       uploaders                                             | Last uploader        |     Last uploaded      
--------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
- andi                          | 0.12                            | 0.13                            | Fabian Klötzl                                                              | Andreas Tille        | 2018-10-27 17:50:30+00
- artemis                       | 17.0.1                          | 18.1.0                          | Andreas Tille                                                               | Andreas Tille        | 2019-02-08 11:19:24+00
- atropos                       | 1.1.24                          | 2.0.0-alpha.4                   | Andreas Tille                                                               | Steffen Moeller      | 2019-11-30 12:19:31+00
- baitfisher                    | 1.2.7+git20180107.e92dbf2       | 1.2.7+git20190123.241d060       | Olivier Sallou                                                              | Andreas Tille        | 2018-09-24 13:04:18+00
- beagle                        | 5.1-191125                      | 200313                          | Dylan Aïssi                                                                | Dylan Aïssi         | 2019-12-14 18:34:10+00
- beast2-mcmc                   | 2.6.0                           | 2.6.2                           | Andreas Tille,Olivier Sallou                                                | Andreas Tille        | 2019-07-31 13:08:02+00
- biobambam2                    | 2.0.153                         | 2.0.158+ds                      | Andreas Tille                                                               | Andreas Tille        | 2020-02-05 13:20:41+00
- biojava-live                  | 1.7.1                           | 1.9.3                           | Andreas Tille,Olivier Sallou,Steffen Moeller                                | Andreas Tille        | 2018-11-12 15:49:23+00
- biomaj3                       | 3.1.14                          | 3.1.16                          | Olivier Sallou                                                              | Olivier Sallou       | 2020-02-08 18:22:42+00
- biomaj3-core                  | 3.0.19                          | 3.0.22                          | Olivier Sallou                                                              | Olivier Sallou       | 2019-11-12 11:20:23+00
- biomaj3-download              | 3.1.0                           | 3.1.2                           | Olivier Sallou                                                              | Olivier Sallou       | 2019-11-12 13:19:24+00
- biomaj3-process               | 3.0.15                          | 3.0.16                          | Olivier Sallou                                                              | Olivier Sallou       | 2019-11-12 11:20:38+00
- biosig4c++                    | 1.9.5                           | 2.0.2                           | Michael Hanke,Yaroslav Halchenko                                            | Andreas Tille        | 2020-03-02 08:38:37+00
- bowtie2                       | 2.3.5.1                         | 2.4.1                           | Alexandre Mestiashvili,Andreas Tille                                        | Michael R. Crusoe    | 2019-12-19 16:34:16+00
- charls                        | 2.0.0                           | 2.1.0                           | Andreas Tille                                                               | Andreas Tille        | 2019-01-10 20:10:56+00
- ctdopts                       | 1.2                             | 1.3                             | Michael R. Crusoe                                                           | Michael R. Crusoe    | 2018-02-28 12:34:26+00
- cwltool                       | 2.0.20200224214940              | 2.0.20200312183052              | Michael R. Crusoe                                                           | Michael R. Crusoe    | 2020-02-26 12:07:54+00
- dcm2niix                      | 1.0.20181125                    | 1.0.20190902                    | Ghislain Antony Vaillant                                                    | Andreas Tille        | 2019-01-30 10:04:52+00
- ea-utils                      | 1.1.2                           | 1.04.807                        | Andreas Tille,Tim Booth                                                     | Andreas Tille        | 2018-04-26 21:48:01+00
- edfbrowser                    | 1.72                            | 1.73                            | Andreas Tille                                                               | Andreas Tille        | 2020-02-14 15:02:37+00
- elastix                       | 4.9.0                           | 5.0.0                           | Gert Wollny,Steve M. Robbins                                                | Andreas Tille        | 2019-01-15 11:50:11+00
- epigrass                      | 2.5.0                           | 2.6.0                           | Andreas Tille,Thorsten Alteholz                                             | Andreas Tille        | 2019-09-13 19:48:50+00
- falcon                        | 1.8.8                           | 2.1.4                           | Afif Elghraoui                                                              | Afif Elghraoui       | 2017-12-16 08:49:13+00
- fis-gtm                       | 6.3-007                         | 6.3-010                         | Amul Shah,Andreas Tille                                                     | Amul Shah            | 2019-02-28 14:12:19+00
- gatb-core                     | 1.4.1+git20191209.9398f28       | 1.4.1+git20200118.1dc23ff       | Andreas Tille,Nadiya Sitdykova                                              | Michael R. Crusoe    | 2020-02-17 14:52:30+00
- gdcm                          | 3.0.4                           | 3.0.5                           | Gert Wollny,Sébastien Jodogne,Steve M. Robbins                             | Gert Wollny          | 2019-11-07 11:49:02+00
- gmap                          | 2019-09-12                      | 2020-03-12                      | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman                          | Steffen Moeller      | 2019-12-30 12:37:15+00
- hdmf                          | 1.5.4                           | 1.6.1                           | Yaroslav Halchenko                                                          | Yaroslav Halchenko   | 2020-02-03 03:01:25+00
- htsjdk                        | 2.18.2                          | 2.21.3                          | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean                 | Andreas Tille        | 2019-03-01 22:19:40+00
- hyphy                         | 2.5.1                           | 2.5.6                           | Andreas Tille                                                               | Andreas Tille        | 2020-01-07 21:19:50+00
- igdiscover                    | 0.11                            | 0.12.2                          | Steffen Moeller                                                             | Andreas Tille        | 2019-09-06 07:04:02+00
- igraph                        | 0.8.0                           | 0.8.1                           | Andreas Tille                                                               | Andreas Tille        | 2020-03-14 20:10:56+00
- igv                           | 2.4.17                          | 2.8.1                           | Andreas Tille,Olivier Sallou                                                | Andreas Tille        | 2019-01-30 15:11:57+00
- imagej                        | 1.52r                           | 1.52t                           | David Miguel Susano Pinto                                                   | Andreas Tille        | 2019-12-04 14:55:11+00
- ismrmrd                       | 1.4.0                           | 1.4.1                           | Ghislain Antony Vaillant                                                    | Andreas Tille        | 2019-01-26 07:49:20+00
- jebl2                         | 0.1+git20180418.653eb83         | 0.1+git20190308.a98448e         | Andreas Tille                                                               | Andreas Tille        | 2018-07-05 12:05:57+00
- kallisto                      | 0.46.1                          | 0.46.2                          | Andreas Tille                                                               | Michael R. Crusoe    | 2019-12-27 07:19:20+00
- kineticstools                 | 0.6.1+git20180425.27a1878       | 0.6.1+git20190618.0ac41a0       | Andreas Tille                                                               | Andreas Tille        | 2019-02-14 13:26:09+00
- king-probe                    | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant                                | Andreas Tille        | 2018-07-16 07:34:48+00
- libbioparser-dev              | 2.0.1                           | 2.1.2                           | Andreas Tille                                                               | Andreas Tille        | 2019-07-15 13:35:45+00
- libedlib                      | 1.2.4                           | 1.2.6                           | Andreas Tille                                                               | Andreas Tille        | 2019-08-19 00:34:56+00
- libgclib                      | 0.11.4                          | 0.11.7                          | Andreas Tille,Michael R. Crusoe,Steffen Moeller                             | Michael R. Crusoe    | 2020-02-14 13:04:26+00
- libjloda-java                 | 0.0+git20180523.cbaf6d1         | 0.0+git20200313.db8cd8f         | Andreas Tille                                                               | Andreas Tille        | 2018-05-25 21:49:43+00
- libsis-base-java              | 18.09~pre1+git20180827.fe4953e  | 18.09~pre1+git20180928.45fbd31  | Andreas Tille,Olivier Sallou,Tim Booth                                      | Andreas Tille        | 2018-09-26 08:35:30+00
- libundead                     | 1.0.10                          | 1.1.1                           | Andreas Tille                                                               | Andreas Tille        | 2019-09-13 21:06:10+00
- metaphlan2                    | 2.9.22                          | 2.96.1                          | Andreas Tille                                                               | Andreas Tille        | 2019-11-08 07:19:11+00
- mmseqs2                       | 10-6d92c                        | 11-e1a1c                        | Shayan Doust                                                                | Andreas Tille        | 2020-02-11 22:38:56+00
- mothur                        | 1.42.1                          | 1.43.0                          | Andreas Tille,Steffen Moeller,Tomasz Buchert                                | Andreas Tille        | 2019-08-01 19:09:05+00
- mummer                        | 3.23                            | 4.0.0~beta2                     | Andreas Tille,Charles Plessy,Steffen Moeller                                | Andreas Tille        | 2018-06-11 07:19:31+00
- mypy                          | 0.761                           | 0.770                           | Michael R. Crusoe                                                           | Michael R. Crusoe    | 2020-01-01 22:05:46+00
- nanopolish                    | 0.11.3                          | 0.12.1                          | Andreas Tille                                                               | Steffen Moeller      | 2019-12-22 12:49:21+00
- ncbi-blast+                   | 2.9.0                           | 2.10.0                          | Aaron M. Ucko,Andreas Tille,Olivier Sallou                                  | Aaron M. Ucko        | 2020-02-17 01:50:53+00
- ncbi-entrez-direct            | 12.0.20190816                   | 13.5.20200306                   | Aaron M. Ucko                                                               | Aaron M. Ucko        | 2020-02-03 03:53:53+00
- ncbi-vdb                      | 2.10.3                          | 2.10.4                          | Andreas Tille                                                               | Andreas Tille        | 2020-02-24 21:12:17+00
- ngs-sdk                       | 2.10.2                          | 2.10.4                          | Andreas Tille,Olivier Sallou,Vincent Danjean                                | Michael R. Crusoe    | 2020-02-17 15:36:45+00
- nibabel                       | 3.0.1                           | 3.0.2                           | Michael Hanke,Yaroslav Halchenko                                            | Andreas Tille        | 2020-03-03 14:58:34+00
- pbcopper                      | 1.3.0                           | 1.4.0                           | Andreas Tille                                                               | Andreas Tille        | 2020-01-29 08:51:15+00
- pbgenomicconsensus            | 2.3.2                           | 2.3.3                           | Andreas Tille                                                               | Liubov Chuprikova    | 2019-04-07 15:33:36+00
- pbseqlib                      | 5.3.3                           | 5.3.4                           | Andreas Tille                                                               | Andreas Tille        | 2020-01-29 15:04:33+00
- picard-tools                  | 2.18.25                         | 2.22.0                          | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille        | 2019-02-04 09:20:37+00
- plink2                        | 2.00~a3-200217                  | 200311                          | Dylan Aïssi                                                                | Dylan Aïssi         | 2020-02-19 06:19:18+00
- prokka                        | 1.14.5                          | 1.14.6                          | Andreas Tille,Michael R. Crusoe                                             | Michael R. Crusoe    | 2019-12-04 11:00:31+00
- pydicom                       | 1.4.1                           | 1.4.2                           | Michael Hanke,Yaroslav Halchenko                                            | Andreas Tille        | 2020-01-23 12:34:53+00
- python-avro                   | 1.9.1                           | 1.9.2                           | Afif Elghraoui                                                              | Andreas Tille        | 2019-12-18 08:41:55+00
- python-bids-validator         | 1.2.4                           | 1.4.4                           | Yaroslav Halchenko                                                          | Yaroslav Halchenko   | 2019-08-17 19:00:11+00
- python-cobra                  | 0.14.2                          | 0.17.1                          | Afif Elghraoui                                                              | Liubov Chuprikova    | 2019-03-02 06:49:44+00
- python-colormap               | 1.0.2                           | 1.0.3                           | Andreas Tille                                                               | Andreas Tille        | 2019-12-06 16:51:43+00
- python-pbcommand              | 1.1.1+git20191122.ec024c3       | 1.1.1+git20200313.2a40099       | Andreas Tille                                                               | Andreas Tille        | 2019-12-19 08:42:03+00
- python-pbcore                 | 1.7.1+git20200206.d66cbbf       | 1.7.1+git20200313.41ba394       | Andreas Tille                                                               | Andreas Tille        | 2020-02-25 08:42:20+00
- python-pymummer               | 0.10.3                          | 0.11.0                          | Afif Elghraoui                                                              | Andreas Tille        | 2019-01-07 09:06:07+00
- python-schema-salad           | 5.0.20200220195218              | 5.0.20200302192450              | Michael R. Crusoe                                                           | Michael R. Crusoe    | 2020-02-27 19:19:53+00
- python-treetime               | 0.7.1                           | 0.7.4                           | Andreas Tille                                                               | Steffen Moeller      | 2020-01-18 20:52:48+00
- q2cli                         | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova    | 2019-12-16 10:20:08+00
- q2-cutadapt                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova    | 2020-01-26 07:34:32+00
- q2-demux                      | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova    | 2020-01-26 07:34:40+00
- q2-feature-classifier         | 2019.4.0                        | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova    | 2019-11-11 10:00:33+00
- q2-feature-table              | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova    | 2020-01-26 07:49:21+00
- q2-metadata                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Andreas Tille        | 2020-02-03 08:42:28+00
- q2-quality-filter             | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova    | 2020-01-26 07:34:49+00
- q2templates                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova    | 2019-11-14 22:00:17+00
- q2-types                      | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova    | 2019-12-23 20:39:42+00
- qiime                         | 2019.10.0                       | 2020.2.0                        | Andreas Tille,Liubov Chuprikova,Steffen Moeller                             | Liubov Chuprikova    | 2019-12-16 09:51:27+00
- racon                         | 1.4.10                          | 1.4.11                          | Andreas Tille,Cédric Lood                                                  | Michael R. Crusoe    | 2019-11-12 17:22:24+00
- relion                        | 1.4                             | 3.0.8                           | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher   | Andreas Tille        | 2018-06-14 12:49:40+00
- resfinder-db                  | 0.0+git20191001.149209d         | 0.0+git20200213.2a8dd7f         | Andreas Tille                                                               | Andreas Tille        | 2019-11-16 23:00:12+00
- salmon                        | 0.12.0                          | 1.1.0                           | Kevin Murray,Michael R. Crusoe                                              | Andreas Tille        | 2018-12-13 19:05:56+00
- scrm                          | 1.7.3                           | 1.7.4                           | Kevin Murray                                                                | Andreas Tille        | 2018-12-17 13:05:34+00
- seaview                       | 4.7                             | 5.0.1                           | Andreas Tille,Charles Plessy                                                | Andreas Tille        | 2018-05-09 13:43:40+00
- simka                         | 1.5.1                           | 1.5.2                           | Shayan Doust                                                                | Andreas Tille        | 2020-01-12 18:49:47+00
- simpleitk                     | 1.0.1                           | 1.2.0                           | Ghislain Antony Vaillant                                                    | Andreas Tille        | 2019-01-30 10:06:08+00
- skesa                         | 2.3.0                           | 2.4.0                           | Andreas Tille                                                               | Andreas Tille        | 2019-08-20 14:49:33+00
- spades                        | 3.13.1                          | 3.14.0                          | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss     | Andreas Tille        | 2019-11-22 10:05:04+00
- spoa                          | 3.0.1                           | 3.0.2                           | Andreas Tille                                                               | Andreas Tille        | 2019-09-16 11:53:05+00
- sra-sdk                       | 2.9.3                           | 2.10.4                          | Andreas Tille,Charles Plessy                                                | Steffen Moeller      | 2018-10-23 20:40:02+00
- stacks                        | 2.41                            | 2.52                            | Andreas Tille,Tim Booth                                                     | Andreas Tille        | 2019-07-12 19:11:30+00
- sumatra                       | 1.0.31                          | 1.0.34                          | Andreas Tille,Tim Booth                                                     | Andreas Tille        | 2018-10-16 10:06:33+00
- t-coffee                      | 12.00.7fb08c2                   | 13.41.0.28bdc39                 | Andreas Tille,Steffen Moeller                                               | Andreas Tille        | 2019-02-15 07:57:10+00
- tnseq-transit                 | 3.0.2                           | 3.1.0                           | Andreas Tille                                                               | Steffen Moeller      | 2020-01-18 22:25:05+00
- unanimity                     | 3.3.0                           | 4.2.0                           | Afif Elghraoui,Andreas Tille                                                | Adrian Bunk          | 2019-02-06 07:34:42+00
- vsearch                       | 2.14.1                          | 2.14.2                          | Andreas Tille,Tim Booth                                                     | Andreas Tille        | 2019-12-17 10:07:09+00
- xmedcon                       | 0.16.1                          | 0.16.2                          | Andreas Tille,Roland Marcus Rutschmann                                      | Andreas Tille        | 2019-01-25 18:23:59+00
+ source                        |             version             |        upstream_version         |                       uploaders                                             |  Last uploader         |     Last uploaded      
+-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+------------------------+------------------------
+ andi                          | 0.12                            | 0.13                            | Fabian Klötzl                                                              | Andreas Tille          | 2018-10-27 17:50:30+00
+ artemis                       | 17.0.1                          | 18.1.0                          | Andreas Tille                                                               | Andreas Tille          | 2019-02-08 11:19:24+00
+ atropos                       | 1.1.24                          | 2.0.0-alpha.4                   | Andreas Tille                                                               | Steffen Moeller        | 2019-11-30 12:19:31+00
+ baitfisher                    | 1.2.7+git20180107.e92dbf2       | 1.2.7+git20190123.241d060       | Olivier Sallou                                                              | Andreas Tille          | 2018-09-24 13:04:18+00
+ beagle                        | 5.1-191125                      | 200313                          | Dylan Aïssi                                                                | Dylan Aïssi           | 2019-12-14 18:34:10+00
+ beast2-mcmc                   | 2.6.0                           | 2.6.2                           | Andreas Tille,Olivier Sallou                                                | Andreas Tille          | 2019-07-31 13:08:02+00
+ biobambam2                    | 2.0.153                         | 2.0.158+ds                      | Andreas Tille                                                               | Andreas Tille          | 2020-02-05 13:20:41+00
+ biojava-live                  | 1.7.1                           | 1.9.3                           | Andreas Tille,Olivier Sallou,Steffen Moeller                                | Andreas Tille          | 2018-11-12 15:49:23+00
+ biomaj3                       | 3.1.14                          | 3.1.16                          | Olivier Sallou                                                              | Olivier Sallou         | 2020-02-08 18:22:42+00
+ biomaj3-core                  | 3.0.19                          | 3.0.22                          | Olivier Sallou                                                              | Olivier Sallou         | 2019-11-12 11:20:23+00
+ biomaj3-download              | 3.1.0                           | 3.1.2                           | Olivier Sallou                                                              | Olivier Sallou         | 2019-11-12 13:19:24+00
+ biomaj3-process               | 3.0.15                          | 3.0.16                          | Olivier Sallou                                                              | Olivier Sallou         | 2019-11-12 11:20:38+00
+ biosig4c++                    | 1.9.5                           | 2.0.2                           | Michael Hanke,Yaroslav Halchenko                                            | Andreas Tille          | 2020-03-02 08:38:37+00
+ bowtie2                       | 2.3.5.1                         | 2.4.1                           | Alexandre Mestiashvili,Andreas Tille                                        | Michael R. Crusoe      | 2019-12-19 16:34:16+00
+ charls                        | 2.0.0                           | 2.1.0                           | Andreas Tille                                                               | Andreas Tille          | 2019-01-10 20:10:56+00
+ ctdopts                       | 1.2                             | 1.3                             | Michael R. Crusoe                                                           | Michael R. Crusoe      | 2018-02-28 12:34:26+00
+ cwltool                       | 2.0.20200224214940              | 2.0.20200312183052              | Michael R. Crusoe                                                           | Michael R. Crusoe      | 2020-02-26 12:07:54+00
+ dcm2niix                      | 1.0.20181125                    | 1.0.20190902                    | Ghislain Antony Vaillant                                                    | Andreas Tille          | 2019-01-30 10:04:52+00
+ ea-utils                      | 1.1.2                           | 1.04.807                        | Andreas Tille,Tim Booth                                                     | Andreas Tille          | 2018-04-26 21:48:01+00
+ edfbrowser                    | 1.72                            | 1.73                            | Andreas Tille                                                               | Andreas Tille          | 2020-02-14 15:02:37+00
+ elastix                       | 4.9.0                           | 5.0.0                           | Gert Wollny,Steve M. Robbins                                                | Andreas Tille          | 2019-01-15 11:50:11+00
+ epigrass                      | 2.5.0                           | 2.6.0                           | Andreas Tille,Thorsten Alteholz                                             | Andreas Tille          | 2019-09-13 19:48:50+00
+ falcon                        | 1.8.8                           | 2.1.4                           | Afif Elghraoui                                                              | Afif Elghraoui         | 2017-12-16 08:49:13+00
+ fis-gtm                       | 6.3-007                         | 6.3-010                         | Amul Shah,Andreas Tille                                                     | Amul Shah              | 2019-02-28 14:12:19+00
+ gatb-core                     | 1.4.1+git20191209.9398f28       | 1.4.1+git20200118.1dc23ff       | Andreas Tille,Nadiya Sitdykova                                              | Michael R. Crusoe      | 2020-02-17 14:52:30+00
+ gdcm                          | 3.0.4                           | 3.0.5                           | Gert Wollny,Sébastien Jodogne,Steve M. Robbins                             | Gert Wollny            | 2019-11-07 11:49:02+00
+ gmap                          | 2019-09-12                      | 2020-03-12                      | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman                          | Steffen Moeller        | 2019-12-30 12:37:15+00
+ hdmf                          | 1.5.4                           | 1.6.1                           | Yaroslav Halchenko                                                          | Yaroslav Halchenko     | 2020-02-03 03:01:25+00
+ htsjdk                        | 2.18.2                          | 2.21.3                          | Andreas Tille,Charles Plessy,Olivier Sallou,Vincent Danjean                 | Andreas Tille          | 2019-03-01 22:19:40+00
+ hyphy                         | 2.5.1                           | 2.5.6                           | Andreas Tille                                                               | Andreas Tille          | 2020-01-07 21:19:50+00
+ igdiscover                    | 0.11                            | 0.12.2                          | Steffen Moeller                                                             | Andreas Tille          | 2019-09-06 07:04:02+00
+ igraph                        | 0.8.0                           | 0.8.1                           | Andreas Tille                                                               | Andreas Tille          | 2020-03-14 20:10:56+00
+ igv                           | 2.4.17                          | 2.8.1                           | Andreas Tille,Olivier Sallou                                                | Andreas Tille          | 2019-01-30 15:11:57+00
+ imagej                        | 1.52r                           | 1.52t                           | David Miguel Susano Pinto                                                   | Andreas Tille          | 2019-12-04 14:55:11+00
+ ismrmrd                       | 1.4.0                           | 1.4.1                           | Ghislain Antony Vaillant                                                    | Andreas Tille          | 2019-01-26 07:49:20+00
+ jebl2                         | 0.1+git20180418.653eb83         | 0.1+git20190308.a98448e         | Andreas Tille                                                               | Andreas Tille          | 2018-07-05 12:05:57+00
+ kallisto                      | 0.46.1                          | 0.46.2                          | Andreas Tille                                                               | Michael R. Crusoe      | 2019-12-27 07:19:20+00
+ kineticstools                 | 0.6.1+git20180425.27a1878       | 0.6.1+git20190618.0ac41a0       | Andreas Tille                                                               | Andreas Tille          | 2019-02-14 13:26:09+00
+ king-probe                    | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant                                | Andreas Tille          | 2018-07-16 07:34:48+00
+ libbioparser-dev              | 2.0.1                           | 2.1.2                           | Andreas Tille                                                               | Andreas Tille          | 2019-07-15 13:35:45+00
+ libedlib                      | 1.2.4                           | 1.2.6                           | Andreas Tille                                                               | Andreas Tille          | 2019-08-19 00:34:56+00
+ libgclib                      | 0.11.4                          | 0.11.7                          | Andreas Tille,Michael R. Crusoe,Steffen Moeller                             | Michael R. Crusoe      | 2020-02-14 13:04:26+00
+ libjloda-java                 | 0.0+git20180523.cbaf6d1         | 0.0+git20200313.db8cd8f         | Andreas Tille                                                               | Andreas Tille          | 2018-05-25 21:49:43+00
+ libsis-base-java              | 18.09~pre1+git20180827.fe4953e  | 18.09~pre1+git20180928.45fbd31  | Andreas Tille,Olivier Sallou,Tim Booth                                      | Andreas Tille          | 2018-09-26 08:35:30+00
+ libundead                     | 1.0.10                          | 1.1.1                           | Andreas Tille                                                               | Andreas Tille          | 2019-09-13 21:06:10+00
+ metaphlan2                    | 2.9.22                          | 2.96.1                          | Andreas Tille                                                               | Andreas Tille          | 2019-11-08 07:19:11+00
+ mmseqs2                       | 10-6d92c                        | 11-e1a1c                        | Shayan Doust                                                                | Andreas Tille          | 2020-02-11 22:38:56+00
+ mothur                        | 1.42.1                          | 1.43.0                          | Andreas Tille,Steffen Moeller,Tomasz Buchert                                | Andreas Tille          | 2019-08-01 19:09:05+00
+ mummer                        | 3.23                            | 4.0.0~beta2                     | Andreas Tille,Charles Plessy,Steffen Moeller                                | Andreas Tille          | 2018-06-11 07:19:31+00
+ mypy                          | 0.761                           | 0.770                           | Michael R. Crusoe                                                           | Michael R. Crusoe      | 2020-01-01 22:05:46+00
+ nanopolish                    | 0.11.3                          | 0.12.1                          | Andreas Tille                                                               | Steffen Moeller        | 2019-12-22 12:49:21+00
+ ncbi-blast+                   | 2.9.0                           | 2.10.0                          | Aaron M. Ucko,Andreas Tille,Olivier Sallou                                  | Aaron M. Ucko          | 2020-02-17 01:50:53+00
+ ncbi-vdb                      | 2.10.3                          | 2.10.4                          | Andreas Tille                                                               | Andreas Tille          | 2020-02-24 21:12:17+00
+ ngs-sdk                       | 2.10.2                          | 2.10.4                          | Andreas Tille,Olivier Sallou,Vincent Danjean                                | Michael R. Crusoe      | 2020-02-17 15:36:45+00
+ nibabel                       | 3.0.1                           | 3.0.2                           | Michael Hanke,Yaroslav Halchenko                                            | Andreas Tille          | 2020-03-03 14:58:34+00
+ pbcopper                      | 1.3.0                           | 1.4.0                           | Andreas Tille                                                               | Andreas Tille          | 2020-01-29 08:51:15+00
+ pbgenomicconsensus            | 2.3.2                           | 2.3.3                           | Andreas Tille                                                               | Liubov Chuprikova      | 2019-04-07 15:33:36+00
+ pbseqlib                      | 5.3.3                           | 5.3.4                           | Andreas Tille                                                               | Andreas Tille          | 2020-01-29 15:04:33+00
+ picard-tools                  | 2.18.25                         | 2.22.0                          | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille          | 2019-02-04 09:20:37+00
+ plink2                        | 2.00~a3-200217                  | 200311                          | Dylan Aïssi                                                                | Dylan Aïssi           | 2020-02-19 06:19:18+00
+ prokka                        | 1.14.5                          | 1.14.6                          | Andreas Tille,Michael R. Crusoe                                             | Michael R. Crusoe      | 2019-12-04 11:00:31+00
+ pydicom                       | 1.4.1                           | 1.4.2                           | Michael Hanke,Yaroslav Halchenko                                            | Andreas Tille          | 2020-01-23 12:34:53+00
+ python-avro                   | 1.9.1                           | 1.9.2                           | Afif Elghraoui                                                              | Andreas Tille          | 2019-12-18 08:41:55+00
+ python-bids-validator         | 1.2.4                           | 1.4.4                           | Yaroslav Halchenko                                                          | Yaroslav Halchenko     | 2019-08-17 19:00:11+00
+ python-cobra                  | 0.14.2                          | 0.17.1                          | Afif Elghraoui                                                              | Liubov Chuprikova      | 2019-03-02 06:49:44+00
+ python-colormap               | 1.0.2                           | 1.0.3                           | Andreas Tille                                                               | Andreas Tille          | 2019-12-06 16:51:43+00
+ python-pbcommand              | 1.1.1+git20191122.ec024c3       | 1.1.1+git20200313.2a40099       | Andreas Tille                                                               | Andreas Tille          | 2019-12-19 08:42:03+00
+ python-pbcore                 | 1.7.1+git20200206.d66cbbf       | 1.7.1+git20200313.41ba394       | Andreas Tille                                                               | Andreas Tille          | 2020-02-25 08:42:20+00
+ python-pymummer               | 0.10.3                          | 0.11.0                          | Afif Elghraoui                                                              | Andreas Tille          | 2019-01-07 09:06:07+00
+ python-schema-salad           | 5.0.20200220195218              | 5.0.20200302192450              | Michael R. Crusoe                                                           | Michael R. Crusoe      | 2020-02-27 19:19:53+00
+ python-treetime               | 0.7.1                           | 0.7.4                           | Andreas Tille                                                               | Steffen Moeller        | 2020-01-18 20:52:48+00
+ q2cli                         | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova      | 2019-12-16 10:20:08+00
+ q2-cutadapt                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova      | 2020-01-26 07:34:32+00
+ q2-demux                      | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova      | 2020-01-26 07:34:40+00
+ q2-feature-classifier         | 2019.4.0                        | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova      | 2019-11-11 10:00:33+00
+ q2-feature-table              | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova      | 2020-01-26 07:49:21+00
+ q2-metadata                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Andreas Tille          | 2020-02-03 08:42:28+00
+ q2-quality-filter             | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova      | 2020-01-26 07:34:49+00
+ q2templates                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova      | 2019-11-14 22:00:17+00
+ q2-types                      | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                           | Liubov Chuprikova      | 2019-12-23 20:39:42+00
+ qiime                         | 2019.10.0                       | 2020.2.0                        | Andreas Tille,Liubov Chuprikova,Steffen Moeller                             | Liubov Chuprikova      | 2019-12-16 09:51:27+00
+ racon                         | 1.4.10                          | 1.4.11                          | Andreas Tille,Cédric Lood                                                  | Michael R. Crusoe      | 2019-11-12 17:22:24+00
+ relion                        | 1.4                             | 3.0.8                           | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher   | Andreas Tille          | 2018-06-14 12:49:40+00
+ resfinder-db                  | 0.0+git20191001.149209d         | 0.0+git20200213.2a8dd7f         | Andreas Tille                                                               | Andreas Tille          | 2019-11-16 23:00:12+00
+ salmon                        | 0.12.0                          | 1.1.0                           | Kevin Murray,Michael R. Crusoe                                              | Andreas Tille          | 2018-12-13 19:05:56+00
+ scrm                          | 1.7.3                           | 1.7.4                           | Kevin Murray                                                                | Andreas Tille          | 2018-12-17 13:05:34+00
+ seaview                       | 4.7                             | 5.0.1                           | Andreas Tille,Charles Plessy                                                | Andreas Tille          | 2018-05-09 13:43:40+00
+ simka                         | 1.5.1                           | 1.5.2                           | Shayan Doust                                                                | Andreas Tille          | 2020-01-12 18:49:47+00
+ simpleitk                     | 1.0.1                           | 1.2.0                           | Ghislain Antony Vaillant                                                    | Andreas Tille          | 2019-01-30 10:06:08+00
+ skesa                         | 2.3.0                           | 2.4.0                           | Andreas Tille                                                               | Andreas Tille          | 2019-08-20 14:49:33+00
+ snakemake                     | 5.10.0                          | 5.11.1                          | Kevin Murray                                                                | Alexandre Mestiashvili | 2020-02-11 12:50:42+00
+ spades                        | 3.13.1                          | 3.14.0                          | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss     | Andreas Tille          | 2019-11-22 10:05:04+00
+ spoa                          | 3.0.1                           | 3.0.2                           | Andreas Tille                                                               | Andreas Tille          | 2019-09-16 11:53:05+00
+ sra-sdk                       | 2.9.3                           | 2.10.4                          | Andreas Tille,Charles Plessy                                                | Steffen Moeller        | 2018-10-23 20:40:02+00
+ stacks                        | 2.41                            | 2.52                            | Andreas Tille,Tim Booth                                                     | Andreas Tille          | 2019-07-12 19:11:30+00
+ sumatra                       | 1.0.31                          | 1.0.34                          | Andreas Tille,Tim Booth                                                     | Andreas Tille          | 2018-10-16 10:06:33+00
+ t-coffee                      | 12.00.7fb08c2                   | 13.41.0.28bdc39                 | Andreas Tille,Steffen Moeller                                               | Andreas Tille          | 2019-02-15 07:57:10+00
+ tnseq-transit                 | 3.0.2                           | 3.1.0                           | Andreas Tille                                                               | Steffen Moeller        | 2020-01-18 22:25:05+00
+ unanimity                     | 3.3.0                           | 4.2.0                           | Afif Elghraoui,Andreas Tille                                                | Adrian Bunk            | 2019-02-06 07:34:42+00
+ vsearch                       | 2.14.1                          | 2.14.2                          | Andreas Tille,Tim Booth                                                     | Andreas Tille          | 2019-12-17 10:07:09+00
+ xmedcon                       | 0.16.1                          | 0.16.2                          | Andreas Tille,Roland Marcus Rutschmann                                      | Andreas Tille          | 2019-01-25 18:23:59+00
 (101 rows)
 
 



View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c4bb84dcb3145e70715dbeac6a399706dc022475

-- 
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c4bb84dcb3145e70715dbeac6a399706dc022475
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200318/7f2919b4/attachment-0001.html>


More information about the debian-med-commit mailing list