[med-svn] [Git][med-team/ragout][upstream] New upstream version 2.3

[Andreas Tille]

Andreas Tille pushed to branch upstream at Debian Med / ragout


Commits:
93dc2cfd by Andreas Tille at 2020-03-18T11:40:46+01:00
New upstream version 2.3
- - - - -


30 changed files:

- .travis.yml
- README.md
- bin/ragout
- docs/INSTALL.md
- docs/NEWS.md
- ragout/__version__.py
- ragout/assembly_graph/assembly_refine.py
- ragout/breakpoint_graph/breakpoint_graph.py
- ragout/breakpoint_graph/chimera_detector.py
- ragout/breakpoint_graph/inferer.py
- ragout/breakpoint_graph/permutation.py
- ragout/breakpoint_graph/repeat_resolver.py
- ragout/maf2synteny/maf2synteny.py
- ragout/main.py
- ragout/newick/__init__.py
- ragout/newick/lexer.py
- − ragout/newick/lexertest.py
- ragout/newick/parser.py
- − ragout/newick/parsertest.py
- ragout/newick/tokens.py
- ragout/newick/tree.py
- − ragout/newick/treetest.py
- ragout/overlap/overlap.py
- ragout/parsers/fasta_parser.py
- ragout/parsers/phylogeny_parser.py
- ragout/parsers/recipe_parser.py
- ragout/phylogeny/inferer.py
- ragout/phylogeny/phylogeny.py
- ragout/scaffolder/merge_iters.py
- ragout/scaffolder/output_generator.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/ragout/-/commit/93dc2cfd8d6c1be93fa1642c36d21cc9f6366905

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