[med-svn] [Git][med-team/prokka][upstream] New upstream version 1.14.6+dfsg
Steffen Möller
gitlab at salsa.debian.org
Wed Mar 18 23:38:27 GMT 2020
Steffen Möller pushed to branch upstream at Debian Med / prokka
Commits:
ca61a788 by Steffen Moeller at 2020-03-19T00:34:34+01:00
New upstream version 1.14.6+dfsg
- - - - -
3 changed files:
- .travis.yml
- README.md
- bin/prokka
Changes:
=====================================
.travis.yml
=====================================
@@ -1,10 +1,13 @@
-language: perl
+dist: bionic
+
+addons:
+ apt:
+ packages:
+ - libdb-dev
+ - libbio-perl-perl
+ - libxml-simple-perl
-perl:
- - "5.26"
-
install:
- - "cpanm --quiet --notest Time::Piece XML::Simple Digest::MD5 Bio::Perl"
- "export PATH=$PWD/bin:$PATH"
script:
=====================================
README.md
=====================================
@@ -14,6 +14,13 @@ viral genomes quickly and produce standards-compliant output files.
## Installation
+### Bioconda
+If you use [Conda](https://conda.io/docs/install/quick.html)
+you can use the [Bioconda channel](https://bioconda.github.io/):
+```
+conda install -c conda-forge -c bioconda -c defaults prokka
+```
+
### Brew
If you are using the [MacOS Brew](http://brew.sh/)
or [LinuxBrew](http://brew.sh/linuxbrew/) packaging system:
@@ -21,11 +28,18 @@ or [LinuxBrew](http://brew.sh/linuxbrew/) packaging system:
brew install brewsci/bio/prokka
```
-### Bioconda
-If you use [Conda](https://conda.io/docs/install/quick.html)
-you can use the [Bioconda channel](https://bioconda.github.io/):
+### Docker
+Maintained by https://hub.docker.com/u/staphb
```
-conda install -c conda-forge -c bioconda -c defaults prokka
+
+docker pull staphb/prokka:latest
+docker run staphb/prokka:latest prokka -h
+```
+
+### Singularity
+```
+singularity build prokka.sif docker://staphb/prokka:latest
+singularity exec prokka.sif prokka -h
```
### Ubuntu/Debian/Mint
=====================================
bin/prokka
=====================================
@@ -46,7 +46,7 @@ my @CMDLINE = ($0, @ARGV);
my $OPSYS = $^O;
my $BINDIR = "$FindBin::RealBin/../binaries/$OPSYS";
my $EXE = $FindBin::RealScript;
-my $VERSION = "1.14.5";
+my $VERSION = "1.14.6";
my $AUTHOR = 'Torsten Seemann <torsten.seemann at gmail.com>';
my $URL = 'https://github.com/tseemann/prokka';
my $PROKKA_PMID = '24642063';
View it on GitLab: https://salsa.debian.org/med-team/prokka/-/commit/ca61a788de3b72fcedae3565ea19759a256021fb
--
View it on GitLab: https://salsa.debian.org/med-team/prokka/-/commit/ca61a788de3b72fcedae3565ea19759a256021fb
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