[med-svn] [Git][med-team/prokka][upstream] New upstream version 1.14.6+dfsg

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / prokka


Commits:
ca61a788 by Steffen Moeller at 2020-03-19T00:34:34+01:00
New upstream version 1.14.6+dfsg
- - - - -


3 changed files:

- .travis.yml
- README.md
- bin/prokka


Changes:

=====================================
.travis.yml
=====================================
@@ -1,10 +1,13 @@
-language: perl
+dist: bionic
+
+addons:
+    apt:
+        packages:
+            - libdb-dev
+            - libbio-perl-perl
+            - libxml-simple-perl
 
-perl:
-    - "5.26"
-    
 install:
-    - "cpanm --quiet --notest Time::Piece XML::Simple Digest::MD5 Bio::Perl"
     - "export PATH=$PWD/bin:$PATH"
 
 script:


=====================================
README.md
=====================================
@@ -14,6 +14,13 @@ viral genomes quickly and produce standards-compliant output files.
 
 ## Installation
 
+### Bioconda
+If you use [Conda](https://conda.io/docs/install/quick.html)
+you can use the [Bioconda channel](https://bioconda.github.io/):
+```
+conda install -c conda-forge -c bioconda -c defaults prokka
+```
+
 ### Brew
 If you are using the [MacOS Brew](http://brew.sh/) 
 or [LinuxBrew](http://brew.sh/linuxbrew/) packaging system:
@@ -21,11 +28,18 @@ or [LinuxBrew](http://brew.sh/linuxbrew/) packaging system:
 brew install brewsci/bio/prokka
 ```
 
-### Bioconda
-If you use [Conda](https://conda.io/docs/install/quick.html)
-you can use the [Bioconda channel](https://bioconda.github.io/):
+### Docker
+Maintained by https://hub.docker.com/u/staphb
 ```
-conda install -c conda-forge -c bioconda -c defaults prokka
+
+docker pull staphb/prokka:latest
+docker run staphb/prokka:latest prokka -h
+```
+
+### Singularity
+```
+singularity build prokka.sif docker://staphb/prokka:latest
+singularity exec prokka.sif prokka -h
 ```
 
 ### Ubuntu/Debian/Mint


=====================================
bin/prokka
=====================================
@@ -46,7 +46,7 @@ my @CMDLINE = ($0, @ARGV);
 my $OPSYS = $^O;
 my $BINDIR = "$FindBin::RealBin/../binaries/$OPSYS";
 my $EXE = $FindBin::RealScript;
-my $VERSION = "1.14.5";
+my $VERSION = "1.14.6";
 my $AUTHOR = 'Torsten Seemann <torsten.seemann at gmail.com>';
 my $URL = 'https://github.com/tseemann/prokka';
 my $PROKKA_PMID = '24642063';



View it on GitLab: https://salsa.debian.org/med-team/prokka/-/commit/ca61a788de3b72fcedae3565ea19759a256021fb

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View it on GitLab: https://salsa.debian.org/med-team/prokka/-/commit/ca61a788de3b72fcedae3565ea19759a256021fb
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