[med-svn] [Git][med-team/diamond-aligner][master] 9 commits: New upstream version 0.9.31

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / diamond-aligner


Commits:
279269cf by Andreas Tille at 2020-03-20T19:26:19+01:00
New upstream version 0.9.31
- - - - -
e1e61cfa by Andreas Tille at 2020-03-20T19:26:19+01:00
routine-update: New upstream version

- - - - -
dd881fdd by Andreas Tille at 2020-03-20T19:26:21+01:00
Update upstream source from tag 'upstream/0.9.31'

Update to upstream version '0.9.31'
with Debian dir b507675c5ed04c7b44e4efa054a774ec3620e76b
- - - - -
ddb82944 by Andreas Tille at 2020-03-20T19:26:21+01:00
routine-update: Standards-Version: 4.5.0

- - - - -
434c6968 by Andreas Tille at 2020-03-20T19:50:04+01:00
Refresh patches

- - - - -
21cbdb79 by Andreas Tille at 2020-03-20T19:50:27+01:00
routine-update: Add salsa-ci file

- - - - -
644d119a by Andreas Tille at 2020-03-20T19:50:27+01:00
routine-update: Rules-Requires-Root: no

- - - - -
066068e7 by Andreas Tille at 2020-03-20T19:50:30+01:00
Set upstream metadata fields: Repository, Repository-Browse.
- - - - -
72aabe05 by Andreas Tille at 2020-03-20T19:55:26+01:00
TODO: cmake: undefined reference to 'pthread_create'

- - - - -


30 changed files:

- CMakeLists.txt
- debian/changelog
- debian/control
- debian/patches/82feea2aee5c82e283704b9317cb5e8abc625f90.patch
- debian/patches/avoid_unwanted_optimisation.patch
- debian/patches/fix_i386_and_s390x
- debian/patches/multi_arch
- + debian/salsa-ci.yml
- debian/upstream/metadata
- src/ChangeLog
- src/align/align.cpp
- src/align/align.h
- src/align/culling.cpp
- src/align/extend.cpp
- src/align/extend.h
- src/align/extend_ungapped.h
- src/align/gapped.cpp
- src/align/legacy/banded_swipe_pipeline.cpp
- − src/align/legacy/greedy_pipeline.cpp
- src/align/legacy/query_mapper.cpp
- src/align/legacy/query_mapper.h
- src/align/output.cpp
- src/align/target.h
- src/align/ungapped.cpp
- src/basic/basic.cpp
- src/basic/config.cpp
- src/basic/config.h
- src/basic/const.h
- src/basic/diagonal_segment.h
- src/basic/hssp.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/compare/588d4861c687e6b60950a0a26e7ba5fbb80a4214...72aabe058628683be09602f3309e44480c50c575

-- 
View it on GitLab: https://salsa.debian.org/med-team/diamond-aligner/-/compare/588d4861c687e6b60950a0a26e7ba5fbb80a4214...72aabe058628683be09602f3309e44480c50c575
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200320/03c975d0/attachment-0001.html>