Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
230c44e4 by Andreas Tille at 2020-03-21T13:44:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,36 +1,36 @@
-Last-Update: Sat, 21 Mar 2020 01:42:04 +0000
+Last-Update: Sat, 21 Mar 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
- dcmtk | 178 | {imaging} |
+ dcmtk | 179 | {imaging} |
orthanc | 102 | {imaging,practice} |
- gdcm | 46 | {imaging-dev} |
- orthanc-wsi | 42 | {laboratory,practice,oncology,his,imaging} |
- htsjdk | 35 | {bio-dev} |
- amide | 34 | {imaging} |
+ gdcm | 45 | {imaging-dev} |
+ orthanc-wsi | 43 | {laboratory,practice,oncology,his,imaging} |
+ amide | 35 | {imaging} |
+ htsjdk | 33 | {bio-dev} |
dicomscope | 31 | {imaging} |
- dcm2niix | 28 | {imaging} |
+ dcm2niix | 29 | {imaging} |
dicom3tools | 26 | {imaging} |
gnumed-server | 20 | {practice} |
pixelmed | 18 | {imaging} |
- ngs-sdk | 17 | {bio-dev} |
gdcm | 16 | {imaging} |
minc-tools | 16 | {imaging} |
+ ngs-sdk | 16 | {bio-dev} |
biojava-live | 15 | {bio-dev} |
invesalius | 15 | {imaging} |
- king | 15 | {imaging,typesetting} |
openslide | 15 | {imaging} |
adun.app | 14 | {bio} |
insighttoolkit4 | 14 | {imaging-dev} |
+ king | 14 | {imaging,typesetting} |
vtk-dicom | 14 | {imaging} |
+ ncbi-entrez-direct | 13 | {bio} |
psychopy | 13 | {psychology} |
- ncbi-entrez-direct | 12 | {bio} |
plastimatch | 12 | {imaging} |
- tree-puzzle | 12 | {bio-phylogeny,bio,cloud} |
- jebl2 | 11 | {bio-dev} |
librg-utils-perl | 11 | {bio} |
+ tree-puzzle | 11 | {bio-phylogeny,bio,cloud} |
biosig4c++ | 10 | {imaging,physics} |
diamond-aligner | 10 | {bio} |
+ jebl2 | 10 | {bio-dev} |
mia | 10 | {imaging} |
norsp | 10 | {bio} |
radiant | 10 | {bio} |
@@ -51,6 +51,7 @@ Last-Update: Sat, 21 Mar 2020 01:42:04 +0000
ecopcr | 8 | {bio} |
gasic | 8 | {bio,cloud} |
gdcm | 8 | {imaging-dev} |
+ hunspell-en-med | 8 | {tools} |
jaligner | 8 | {bio} |
libminc | 8 | {imaging-dev} |
maqview | 8 | {bio} |
@@ -77,7 +78,6 @@ Last-Update: Sat, 21 Mar 2020 01:42:04 +0000
fitgcp | 7 | {cloud,bio} |
freebayes | 7 | {bio} |
freecontact | 7 | {cloud,bio} |
- hunspell-en-med | 7 | {tools} |
idba | 7 | {bio,cloud} |
lagan | 7 | {bio} |
lucy | 7 | {bio} |
@@ -111,7 +111,6 @@ Last-Update: Sat, 21 Mar 2020 01:42:04 +0000
libdivsufsort | 6 | {bio-dev} |
libncl | 6 | {bio} |
libpal-java | 6 | {bio-dev} |
- libsbml | 6 | {bio-dev} |
mapsembler2 | 6 | {cloud,bio} |
mhap | 6 | {bio-ngs,bio} |
mlv-smile | 6 | {bio,cloud} |
@@ -144,6 +143,7 @@ Last-Update: Sat, 21 Mar 2020 01:42:04 +0000
jellyfish1 | 5 | {bio} |
jmodeltest | 5 | {bio,bio-phylogeny} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
+ libsbml | 5 | {bio-dev} |
logol | 5 | {bio} |
maffilter | 5 | {bio} |
mptp | 5 | {bio} |
@@ -190,9 +190,9 @@ Last-Update: Sat, 21 Mar 2020 01:42:04 +0000
blasr | 3 | {bio-ngs,bio} |
getdata | 3 | {bio} |
igor | 3 | {bio} |
- libgff | 3 | {bio-dev} |
mrs | 3 | {bio} |
orthanc-dicomweb | 3 | {imaging} |
+ orthanc-mysql | 3 | {imaging} |
qcumber | 3 | {bio} |
qrisk2 | 3 | {practice} |
rtax | 3 | {cloud,bio} |
@@ -209,16 +209,14 @@ Last-Update: Sat, 21 Mar 2020 01:42:04 +0000
ctn | 2 | {imaging-dev} |
kma | 2 | {bio} |
kmerresistance | 2 | {bio} |
+ libgff | 2 | {bio-dev} |
libsmithwaterman | 2 | {bio} |
nanook | 2 | {bio} |
opencfu | 2 | {laboratory} |
- orthanc-mysql | 2 | {imaging} |
relion | 2 | {bio} |
scrm | 2 | {bio} |
skesa | 2 | {bio} |
spaced | 2 | {bio} |
- srf | 2 | {bio-dev} |
- stringtie | 2 | {bio} |
tree-puzzle | 2 | {bio,cloud,bio-phylogeny} |
varscan | 2 | {bio} |
volpack | 2 | {imaging-dev} |
@@ -246,6 +244,8 @@ Last-Update: Sat, 21 Mar 2020 01:42:04 +0000
ragout | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
sift | 1 | {bio} |
+ srf | 1 | {bio-dev} |
+ stringtie | 1 | {bio} |
thesias | 1 | {bio} |
trace2dbest | 1 | {bio} |
vtk-dicom | 1 | {imaging-dev} |
@@ -303,8 +303,8 @@ Last-Update: Sat, 21 Mar 2020 01:42:04 +0000
python-deeptools | 0 | {bio,bio-dev} |
python-py2bit | 0 | {bio-dev,bio} |
python-pyani | 0 | {bio-dev} |
- relion | 0 | {bio} |
relion | 0 | {bio-dev} |
+ relion | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seqan | 0 | {bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
@@ -1,10 +1,9 @@
-Last-Update: Sat, 21 Mar 2020 01:42:04 +0000
+Last-Update: Sat, 21 Mar 2020 13:42:04 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+------------------------+------------------------
andi | 0.12 | 0.13 | Fabian Klötzl | Andreas Tille | 2018-10-27 17:50:30+00
artemis | 17.0.1 | 18.1.0 | Andreas Tille | Andreas Tille | 2019-02-08 11:19:24+00
- atropos | 1.1.24 | 2.0.0-alpha.4 | Andreas Tille | Steffen Moeller | 2019-11-30 12:19:31+00
baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
beagle | 5.1-191125 | 200313 | Dylan Aïssi | Dylan Aïssi | 2019-12-14 18:34:10+00
biobambam2 | 2.0.153 | 2.0.159+ds | Andreas Tille | Andreas Tille | 2020-02-05 13:20:41+00
@@ -12,7 +11,7 @@ Last-Update: Sat, 21 Mar 2020 01:42:04 +0000
biomaj3-core | 3.0.19 | 3.0.22 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:23+00
biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00
biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00
- cwltool | 2.0.20200224214940 | 2.0.20200312183052 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00
+ cwltool | 2.0.20200224214940 | 3.0.20200317203547 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00
ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00
edfbrowser | 1.72 | 1.73 | Andreas Tille | Andreas Tille | 2020-02-14 15:02:37+00
fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00
@@ -23,7 +22,7 @@ Last-Update: Sat, 21 Mar 2020 01:42:04 +0000
hyphy | 2.5.1 | 2.5.7 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00
igdiscover | 0.11 | 0.12.2 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
igv | 2.4.17 | 2.8.1 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
- imagej | 1.52r | 1.52t | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
+ imagej | 1.52r | 1.52u | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
ismrmrd | 1.4.0 | 1.4.1 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-26 07:49:20+00
jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
kallisto | 0.46.1 | 0.46.2 | Andreas Tille | Michael R. Crusoe | 2019-12-27 07:19:20+00
@@ -32,7 +31,6 @@ Last-Update: Sat, 21 Mar 2020 01:42:04 +0000
last-align | 1047 | 1060 | Andreas Tille,Charles Plessy | Michael R. Crusoe | 2020-01-24 15:34:18+00
libbioparser-dev | 2.0.1 | 2.1.2 | Andreas Tille | Andreas Tille | 2019-07-15 13:35:45+00
libedlib | 1.2.4 | 1.2.6 | Andreas Tille | Andreas Tille | 2019-08-19 00:34:56+00
- libgclib | 0.11.4 | 0.11.7 | Andreas Tille,Michael R. Crusoe,Steffen Moeller | Michael R. Crusoe | 2020-02-14 13:04:26+00
libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200318.6fef1b7 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
@@ -41,8 +39,6 @@ Last-Update: Sat, 21 Mar 2020 01:42:04 +0000
ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
ncbi-vdb | 2.10.3 | 2.10.4 | Andreas Tille | Andreas Tille | 2020-02-24 21:12:17+00
nibabel | 3.0.1 | 3.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-03 14:58:34+00
- pbcopper | 1.3.0 | 1.4.0 | Andreas Tille | Andreas Tille | 2020-01-29 08:51:15+00
- pbseqlib | 5.3.3 | 5.3.4 | Andreas Tille | Andreas Tille | 2020-01-29 15:04:33+00
plink2 | 2.00~a3-200217 | 200311 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
pynn | 0.7.5 | 0.9.5 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-20 11:00:12+00
python-bids-validator | 1.2.4 | 1.4.4 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
@@ -50,7 +46,6 @@ Last-Update: Sat, 21 Mar 2020 01:42:04 +0000
python-pbcommand | 1.1.1+git20191122.ec024c3 | 1.1.1+git20200313.2a40099 | Andreas Tille | Andreas Tille | 2019-12-19 08:42:03+00
python-pbcore | 1.7.1+git20200206.d66cbbf | 1.7.1+git20200313.41ba394 | Andreas Tille | Andreas Tille | 2020-02-25 08:42:20+00
python-schema-salad | 5.0.20200220195218 | 5.0.20200302192450 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-27 19:19:53+00
- q2cli | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-16 10:20:08+00
q2-cutadapt | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:32+00
q2-demux | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:40+00
q2-feature-classifier | 2019.4.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-11 10:00:33+00
@@ -67,7 +62,6 @@ Last-Update: Sat, 21 Mar 2020 01:42:04 +0000
seaview | 4.7 | 5.0.1 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
skesa | 2.3.0 | 2.4.0 | Andreas Tille | Andreas Tille | 2019-08-20 14:49:33+00
snakemake | 5.10.0 | 5.11.1 | Kevin Murray | Alexandre Mestiashvili | 2020-02-11 12:50:42+00
- spades | 3.13.1 | 3.14.0 | Alexandre Mestiashvili,Andreas Tille,Michael R. Crusoe,Sascha Steinbiss | Andreas Tille | 2019-11-22 10:05:04+00
spoa | 3.0.1 | 3.0.2 | Andreas Tille | Andreas Tille | 2019-09-16 11:53:05+00
sra-sdk | 2.9.3 | 2.10.4 | Andreas Tille,Charles Plessy | Steffen Moeller | 2018-10-23 20:40:02+00
stacks | 2.41 | 2.52 | Andreas Tille,Tim Booth | Andreas Tille | 2019-07-12 19:11:30+00
@@ -76,7 +70,7 @@ Last-Update: Sat, 21 Mar 2020 01:42:04 +0000
tnseq-transit | 3.0.2 | 3.1.0 | Andreas Tille | Steffen Moeller | 2020-01-18 22:25:05+00
vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(74 rows)
+(68 rows)
source | id | severity | title
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/230c44e4247785155ba5ed3f82132725fd0ebb1e
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/230c44e4247785155ba5ed3f82132725fd0ebb1e
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