[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille gitlab at salsa.debian.org
Sun Mar 22 13:44:27 GMT 2020



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
f69334ff by Andreas Tille at 2020-03-22T13:44:21+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,17 +1,17 @@
-Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
+Last-Update: Sun, 22 Mar 2020 13:42:03 +0000
 
  Source                        | Vote   | Tasks                                      |                                 Tags                                 
 -------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    179 | {imaging}                                  | 
+ dcmtk                         |    178 | {imaging}                                  | 
  orthanc                       |    102 | {imaging,practice}                         | 
- gdcm                          |     45 | {imaging-dev}                              | 
- orthanc-wsi                   |     43 | {laboratory,practice,oncology,his,imaging} | 
+ gdcm                          |     46 | {imaging-dev}                              | 
+ orthanc-wsi                   |     43 | {laboratory,his,oncology,practice,imaging} | 
  amide                         |     35 | {imaging}                                  | 
  htsjdk                        |     33 | {bio-dev}                                  | 
- dicomscope                    |     31 | {imaging}                                  | 
- dcm2niix                      |     29 | {imaging}                                  | 
- dicom3tools                   |     26 | {imaging}                                  | 
- gnumed-server                 |     20 | {practice}                                 | 
+ dcm2niix                      |     30 | {imaging}                                  | 
+ dicomscope                    |     29 | {imaging}                                  | 
+ dicom3tools                   |     25 | {imaging}                                  | 
+ gnumed-server                 |     19 | {practice}                                 | 
  pixelmed                      |     18 | {imaging}                                  | 
  gdcm                          |     16 | {imaging}                                  | 
  minc-tools                    |     16 | {imaging}                                  | 
@@ -21,82 +21,81 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
  openslide                     |     15 | {imaging}                                  | 
  adun.app                      |     14 | {bio}                                      | 
  insighttoolkit4               |     14 | {imaging-dev}                              | 
- king                          |     14 | {imaging,typesetting}                      | 
+ king                          |     14 | {typesetting,imaging}                      | 
  vtk-dicom                     |     14 | {imaging}                                  | 
  ncbi-entrez-direct            |     13 | {bio}                                      | 
+ plastimatch                   |     13 | {imaging}                                  | 
  psychopy                      |     13 | {psychology}                               | 
- plastimatch                   |     12 | {imaging}                                  | 
  librg-utils-perl              |     11 | {bio}                                      | 
- tree-puzzle                   |     11 | {bio-phylogeny,bio,cloud}                  | 
+ tree-puzzle                   |     11 | {bio,bio-phylogeny,cloud}                  | 
  biosig4c++                    |     10 | {imaging,physics}                          | 
  diamond-aligner               |     10 | {bio}                                      | 
  jebl2                         |     10 | {bio-dev}                                  | 
  mia                           |     10 | {imaging}                                  | 
  norsp                         |     10 | {bio}                                      | 
  radiant                       |     10 | {bio}                                      | 
+ staden                        |     10 | {bio}                                      | 
  cgview                        |      9 | {bio}                                      | 
  ea-utils                      |      9 | {bio}                                      | 
- fastlink                      |      9 | {bio,cloud}                                | 
+ fastlink                      |      9 | {cloud,bio}                                | 
  king-probe                    |      9 | {bio}                                      | 
  mipe                          |      9 | {bio,cloud}                                | 
  ncbi-seg                      |      9 | {bio}                                      | 
  ngs-sdk                       |      9 | {bio-dev}                                  | 
  paml                          |      9 | {bio}                                      | 
  seqsero                       |      9 | {bio}                                      | 
- sortmerna                     |      9 | {bio}                                      | 
- staden                        |      9 | {bio}                                      | 
- ampliconnoise                 |      8 | {bio,cloud}                                | 
- arden                         |      8 | {cloud,bio}                                | 
+ ampliconnoise                 |      8 | {cloud,bio}                                | 
+ arden                         |      8 | {bio,cloud}                                | 
  bppsuite                      |      8 | {bio}                                      | 
  ecopcr                        |      8 | {bio}                                      | 
- gasic                         |      8 | {bio,cloud}                                | 
+ gasic                         |      8 | {cloud,bio}                                | 
  gdcm                          |      8 | {imaging-dev}                              | 
  hunspell-en-med               |      8 | {tools}                                    | 
  jaligner                      |      8 | {bio}                                      | 
- libminc                       |      8 | {imaging-dev}                              | 
  maqview                       |      8 | {bio}                                      | 
  mauve-aligner                 |      8 | {bio}                                      | 
  melting                       |      8 | {cloud,bio}                                | 
  neobio                        |      8 | {bio,cloud}                                | 
  obitools                      |      8 | {bio}                                      | 
- phyutility                    |      8 | {bio,cloud}                                | 
+ phyutility                    |      8 | {cloud,bio}                                | 
  piler                         |      8 | {bio}                                      | 
- sigma-align                   |      8 | {bio-phylogeny,cloud,bio}                  | 
+ sigma-align                   |      8 | {cloud,bio-phylogeny,bio}                  | 
  alter-sequence-alignment      |      7 | {bio}                                      | 
- anfo                          |      7 | {cloud,bio}                                | 
+ anfo                          |      7 | {bio,cloud}                                | 
  biomaj3-cli                   |      7 | {cloud}                                    | 
  bio-tradis                    |      7 | {bio-dev,bio}                              | 
  codonw                        |      7 | {bio}                                      | 
- daligner                      |      7 | {bio-ngs,bio}                              | 
+ daligner                      |      7 | {bio,bio-ngs}                              | 
  dazzdb                        |      7 | {bio}                                      | 
  dicompyler                    |      7 | {oncology}                                 | 
  edtsurf                       |      7 | {bio}                                      | 
- embassy-domainatrix           |      7 | {cloud,bio}                                | 
- embassy-domalign              |      7 | {bio,cloud}                                | 
+ embassy-domainatrix           |      7 | {bio,cloud}                                | 
+ embassy-domalign              |      7 | {cloud,bio}                                | 
  embassy-domsearch             |      7 | {cloud,bio}                                | 
  estscan                       |      7 | {bio}                                      | 
  fitgcp                        |      7 | {cloud,bio}                                | 
  freebayes                     |      7 | {bio}                                      | 
- freecontact                   |      7 | {cloud,bio}                                | 
- idba                          |      7 | {bio,cloud}                                | 
+ freecontact                   |      7 | {bio,cloud}                                | 
  lagan                         |      7 | {bio}                                      | 
+ libminc                       |      7 | {imaging-dev}                              | 
  lucy                          |      7 | {bio}                                      | 
  microbegps                    |      7 | {bio}                                      | 
  paraclu                       |      7 | {bio,cloud}                                | 
- perm                          |      7 | {cloud,bio}                                | 
+ perm                          |      7 | {bio,cloud}                                | 
  phast                         |      7 | {bio}                                      | 
  placnet                       |      7 | {bio}                                      | 
  poretools                     |      7 | {bio}                                      | 
  predictprotein                |      7 | {bio}                                      | 
- prime-phylo                   |      7 | {bio,cloud}                                | 
+ prime-phylo                   |      7 | {cloud,bio}                                | 
  probabel                      |      7 | {bio,cloud}                                | 
  pscan-tfbs                    |      7 | {bio}                                      | 
  sibsim4                       |      7 | {bio,cloud}                                | 
- treeview                      |      7 | {bio-phylogeny,bio}                        | 
+ treeview                      |      7 | {bio,bio-phylogeny}                        | 
  abacas                        |      6 | {bio}                                      | 
  assemblytics                  |      6 | {bio}                                      | 
  baitfisher                    |      6 | {bio}                                      | 
  beast2-mcmc                   |      6 | {bio}                                      | 
+ bio-rainbow                   |      6 | {bio}                                      | 
  bitseq                        |      6 | {bio}                                      | 
  canu                          |      6 | {bio}                                      | 
  centrifuge                    |      6 | {bio}                                      | 
@@ -111,8 +110,9 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
  libdivsufsort                 |      6 | {bio-dev}                                  | 
  libncl                        |      6 | {bio}                                      | 
  libpal-java                   |      6 | {bio-dev}                                  | 
- mapsembler2                   |      6 | {cloud,bio}                                | 
- mhap                          |      6 | {bio-ngs,bio}                              | 
+ libsbml                       |      6 | {bio-dev}                                  | 
+ mapsembler2                   |      6 | {bio,cloud}                                | 
+ mhap                          |      6 | {bio,bio-ngs}                              | 
  mlv-smile                     |      6 | {bio,cloud}                                | 
  murasaki                      |      6 | {bio}                                      | 
  orthanc-webviewer             |      6 | {imaging}                                  | 
@@ -125,14 +125,13 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
  seqtools                      |      6 | {bio}                                      | 
  sickle                        |      6 | {bio}                                      | 
  spread-phy                    |      6 | {bio,bio-phylogeny}                        | 
- squizz                        |      6 | {cloud,bio}                                | 
+ squizz                        |      6 | {bio,cloud}                                | 
  transtermhp                   |      6 | {bio}                                      | 
  vsearch                       |      6 | {bio}                                      | 
  zalign                        |      6 | {bio,cloud}                                | 
  andi                          |      5 | {bio}                                      | 
  bandage                       |      5 | {bio}                                      | 
  beads                         |      5 | {bio}                                      | 
- bio-rainbow                   |      5 | {bio}                                      | 
  brig                          |      5 | {bio}                                      | 
  clonalorigin                  |      5 | {bio}                                      | 
  cluster3                      |      5 | {bio}                                      | 
@@ -141,33 +140,31 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
  ghmm                          |      5 | {bio}                                      | 
  hinge                         |      5 | {bio}                                      | 
  jellyfish1                    |      5 | {bio}                                      | 
- jmodeltest                    |      5 | {bio,bio-phylogeny}                        | 
+ jmodeltest                    |      5 | {bio-phylogeny,bio}                        | 
  librdp-taxonomy-tree-java     |      5 | {bio-dev}                                  | 
- libsbml                       |      5 | {bio-dev}                                  | 
  logol                         |      5 | {bio}                                      | 
  maffilter                     |      5 | {bio}                                      | 
  mptp                          |      5 | {bio}                                      | 
+ openslide                     |      5 | {imaging-dev}                              | 
  patman                        |      5 | {bio}                                      | 
  phipack                       |      5 | {bio}                                      | 
  plasmidseeker                 |      5 | {bio}                                      | 
- prottest                      |      5 | {bio-phylogeny,bio}                        | 
+ prottest                      |      5 | {bio,bio-phylogeny}                        | 
  pymia                         |      5 | {imaging-dev}                              | 
  quorum                        |      5 | {bio}                                      | 
  rdp-classifier                |      5 | {bio}                                      | 
  repeatmasker-recon            |      5 | {bio}                                      | 
  seer                          |      5 | {bio}                                      | 
- seqtools                      |      5 | {bio}                                      | 
  sprai                         |      5 | {bio}                                      | 
  tracetuner                    |      5 | {bio}                                      | 
  tvc                           |      5 | {bio}                                      | 
- beast-mcmc                    |      4 | {bio,bio-phylogeny}                        | 
+ beast-mcmc                    |      4 | {bio-phylogeny,bio}                        | 
  biomaj3-daemon                |      4 | {bio}                                      | 
  delly                         |      4 | {bio}                                      | 
  dindel                        |      4 | {bio}                                      | 
  fastml                        |      4 | {bio}                                      | 
  fsm-lite                      |      4 | {bio}                                      | 
  metaphlan2                    |      4 | {bio}                                      | 
- openslide                     |      4 | {imaging-dev}                              | 
  parsnp                        |      4 | {bio}                                      | 
  pbdagcon                      |      4 | {bio}                                      | 
  phybin                        |      4 | {bio}                                      | 
@@ -187,15 +184,15 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
  velvetoptimiser               |      4 | {bio}                                      | 
  yaha                          |      4 | {bio}                                      | 
  bart-view                     |      3 | {imaging}                                  | 
- blasr                         |      3 | {bio-ngs,bio}                              | 
- getdata                       |      3 | {bio}                                      | 
+ blasr                         |      3 | {bio,bio-ngs}                              | 
  igor                          |      3 | {bio}                                      | 
+ libgff                        |      3 | {bio-dev}                                  | 
  mrs                           |      3 | {bio}                                      | 
  orthanc-dicomweb              |      3 | {imaging}                                  | 
  orthanc-mysql                 |      3 | {imaging}                                  | 
  qcumber                       |      3 | {bio}                                      | 
  qrisk2                        |      3 | {practice}                                 | 
- rtax                          |      3 | {cloud,bio}                                | 
+ rtax                          |      3 | {bio,cloud}                                | 
  segemehl                      |      3 | {bio}                                      | 
  seqmagick                     |      3 | {bio}                                      | 
  sga                           |      3 | {bio}                                      | 
@@ -205,11 +202,11 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
  sumaclust                     |      3 | {bio}                                      | 
  surankco                      |      3 | {bio}                                      | 
  tnseq-transit                 |      3 | {bio}                                      | 
- biosig4c++                    |      2 | {physics,imaging-dev}                      | 
+ biosig4c++                    |      2 | {imaging-dev,physics}                      | 
  ctn                           |      2 | {imaging-dev}                              | 
+ getdata                       |      2 | {bio}                                      | 
  kma                           |      2 | {bio}                                      | 
  kmerresistance                |      2 | {bio}                                      | 
- libgff                        |      2 | {bio-dev}                                  | 
  libsmithwaterman              |      2 | {bio}                                      | 
  nanook                        |      2 | {bio}                                      | 
  opencfu                       |      2 | {laboratory}                               | 
@@ -217,6 +214,7 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
  scrm                          |      2 | {bio}                                      | 
  skesa                         |      2 | {bio}                                      | 
  spaced                        |      2 | {bio}                                      | 
+ srf                           |      2 | {bio-dev}                                  | 
  tree-puzzle                   |      2 | {bio,cloud,bio-phylogeny}                  | 
  varscan                       |      2 | {bio}                                      | 
  volpack                       |      2 | {imaging-dev}                              | 
@@ -224,9 +222,9 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
  atropos                       |      1 | {bio}                                      | 
  biosig4c++                    |      1 | {imaging-dev,physics}                      | 
  blimps                        |      1 | {bio}                                      | 
- cufflinks                     |      1 | {cloud,bio}                                | 
+ cufflinks                     |      1 | {bio,cloud}                                | 
  edflib                        |      1 | {imaging-dev}                              | 
- embassy-phylip                |      1 | {bio,cloud}                                | 
+ embassy-phylip                |      1 | {cloud,bio}                                | 
  fasta3                        |      1 | {bio}                                      | 
  libbio-mage-utils-perl        |      1 | {bio-dev}                                  | 
  libchado-perl                 |      1 | {bio-dev}                                  | 
@@ -244,13 +242,12 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
  ragout                        |      1 | {bio}                                      | 
  samtools-legacy               |      1 | {bio-dev}                                  | 
  sift                          |      1 | {bio}                                      | 
- srf                           |      1 | {bio-dev}                                  | 
  stringtie                     |      1 | {bio}                                      | 
  thesias                       |      1 | {bio}                                      | 
  trace2dbest                   |      1 | {bio}                                      | 
  vtk-dicom                     |      1 | {imaging-dev}                              | 
  bambamc                       |      0 | {bio-dev}                                  | 
- biobambam2                    |      0 | {bio,bio-dev}                              | 
+ biobambam2                    |      0 | {bio-dev,bio}                              | 
  biojava4-live                 |      0 | {bio-dev}                                  | 
  biosig4c++                    |      0 | {physics}                                  | 
  biosyntax                     |      0 | {bio}                                      | 
@@ -297,14 +294,13 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
  ngs-sdk                       |      0 | {bio-dev}                                  | 
  nutsqlite                     |      0 | {tools}                                    | 
  orthanc-imagej                |      0 | {imaging}                                  | 
- oscar                         |      0 | {practice,data,tools}                      | 
+ oscar                         |      0 | {data,practice,tools}                      | 
  pbcopper                      |      0 | {bio-dev}                                  | 
  pbseqlib                      |      0 | {bio-dev}                                  | 
  python-deeptools              |      0 | {bio,bio-dev}                              | 
- python-py2bit                 |      0 | {bio-dev,bio}                              | 
- python-pyani                  |      0 | {bio-dev}                                  | 
- relion                        |      0 | {bio-dev}                                  | 
+ python-py2bit                 |      0 | {bio,bio-dev}                              | 
  relion                        |      0 | {bio}                                      | 
+ relion                        |      0 | {bio-dev}                                  | 
  sambamba                      |      0 | {bio}                                      | 
  sbmltoolbox                   |      0 | {bio-dev}                                  | 
  seqan                         |      0 | {bio-dev}                                  | 
@@ -316,5 +312,5 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
  spaln                         |      0 | {bio}                                      | 
  trim-galore                   |      0 | {bio}                                      | 
  varna                         |      0 | {bio}                                      | 
-(344 rows)
+(340 rows)
 


=====================================
outdated_med-packages.txt
=====================================
@@ -1,76 +1,65 @@
-Last-Update: Sun, 22 Mar 2020 01:42:04 +0000
+Last-Update: Sun, 22 Mar 2020 13:42:03 +0000
 
- source                        |             version             |        upstream_version         |                      uploaders                                            |  Last uploader         |     Last uploaded      
--------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+------------------------+------------------------
- andi                          | 0.12                            | 0.13                            | Fabian Klötzl                                                            | Andreas Tille          | 2018-10-27 17:50:30+00
- artemis                       | 17.0.1                          | 18.1.0                          | Andreas Tille                                                             | Andreas Tille          | 2019-02-08 11:19:24+00
- baitfisher                    | 1.2.7+git20180107.e92dbf2       | 1.2.7+git20190123.241d060       | Olivier Sallou                                                            | Andreas Tille          | 2018-09-24 13:04:18+00
- beagle                        | 5.1-191125                      | 200313                          | Dylan Aïssi                                                              | Dylan Aïssi           | 2019-12-14 18:34:10+00
- biobambam2                    | 2.0.153                         | 2.0.159+ds                      | Andreas Tille                                                             | Andreas Tille          | 2020-02-05 13:20:41+00
- biomaj3                       | 3.1.14                          | 3.1.16                          | Olivier Sallou                                                            | Olivier Sallou         | 2020-02-08 18:22:42+00
- biomaj3-core                  | 3.0.19                          | 3.0.22                          | Olivier Sallou                                                            | Olivier Sallou         | 2019-11-12 11:20:23+00
- biomaj3-process               | 3.0.15                          | 3.0.16                          | Olivier Sallou                                                            | Olivier Sallou         | 2019-11-12 11:20:38+00
- biosig4c++                    | 1.9.5                           | 2.0.2                           | Michael Hanke,Yaroslav Halchenko                                          | Andreas Tille          | 2020-03-02 08:38:37+00
- cwltool                       | 2.0.20200224214940              | 3.0.20200317203547              | Michael R. Crusoe                                                         | Michael R. Crusoe      | 2020-02-26 12:07:54+00
- ea-utils                      | 1.1.2                           | 1.04.807                        | Andreas Tille,Tim Booth                                                   | Andreas Tille          | 2018-04-26 21:48:01+00
- edfbrowser                    | 1.72                            | 1.73                            | Andreas Tille                                                             | Andreas Tille          | 2020-02-14 15:02:37+00
- fis-gtm                       | 6.3-007                         | 6.3-010                         | Amul Shah,Andreas Tille                                                   | Amul Shah              | 2019-02-28 14:12:19+00
- gatb-core                     | 1.4.1+git20191209.9398f28       | 1.4.1+git20200118.1dc23ff       | Andreas Tille,Nadiya Sitdykova                                            | Michael R. Crusoe      | 2020-02-17 14:52:30+00
- gdcm                          | 3.0.4                           | 3.0.5                           | Gert Wollny,Sébastien Jodogne,Steve M. Robbins                           | Gert Wollny            | 2019-11-07 11:49:02+00
- gmap                          | 2019-09-12                      | 2020-03-12                      | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman                        | Steffen Moeller        | 2019-12-30 12:37:15+00
- hdmf                          | 1.5.4                           | 1.6.1                           | Yaroslav Halchenko                                                        | Yaroslav Halchenko     | 2020-02-03 03:01:25+00
- hyphy                         | 2.5.1                           | 2.5.7                           | Andreas Tille                                                             | Andreas Tille          | 2020-01-07 21:19:50+00
- igdiscover                    | 0.11                            | 0.12.2                          | Steffen Moeller                                                           | Andreas Tille          | 2019-09-06 07:04:02+00
- igv                           | 2.4.17                          | 2.8.1                           | Andreas Tille,Olivier Sallou                                              | Andreas Tille          | 2019-01-30 15:11:57+00
- imagej                        | 1.52r                           | 1.52u                           | David Miguel Susano Pinto                                                 | Andreas Tille          | 2019-12-04 14:55:11+00
- ismrmrd                       | 1.4.0                           | 1.4.1                           | Ghislain Antony Vaillant                                                  | Andreas Tille          | 2019-01-26 07:49:20+00
- jebl2                         | 0.1+git20180418.653eb83         | 0.1+git20190308.a98448e         | Andreas Tille                                                             | Andreas Tille          | 2018-07-05 12:05:57+00
- kallisto                      | 0.46.1                          | 0.46.2                          | Andreas Tille                                                             | Michael R. Crusoe      | 2019-12-27 07:19:20+00
- kineticstools                 | 0.6.1+git20180425.27a1878       | 0.6.1+git20190618.0ac41a0       | Andreas Tille                                                             | Andreas Tille          | 2019-02-14 13:26:09+00
- king-probe                    | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant                              | Andreas Tille          | 2018-07-16 07:34:48+00
- last-align                    | 1047                            | 1060                            | Andreas Tille,Charles Plessy                                              | Michael R. Crusoe      | 2020-01-24 15:34:18+00
- libbioparser-dev              | 2.0.1                           | 2.1.2                           | Andreas Tille                                                             | Andreas Tille          | 2019-07-15 13:35:45+00
- libedlib                      | 1.2.4                           | 1.2.6                           | Andreas Tille                                                             | Andreas Tille          | 2019-08-19 00:34:56+00
- libjloda-java                 | 0.0+git20180523.cbaf6d1         | 0.0+git20200318.6fef1b7         | Andreas Tille                                                             | Andreas Tille          | 2018-05-25 21:49:43+00
- libsis-base-java              | 18.09~pre1+git20180827.fe4953e  | 18.09~pre1+git20180928.45fbd31  | Andreas Tille,Olivier Sallou,Tim Booth                                    | Andreas Tille          | 2018-09-26 08:35:30+00
- metaphlan2                    | 2.9.22                          | 2.96.1                          | Andreas Tille                                                             | Andreas Tille          | 2019-11-08 07:19:11+00
- mummer                        | 3.23                            | 4.0.0~beta2                     | Andreas Tille,Charles Plessy,Steffen Moeller                              | Andreas Tille          | 2018-06-11 07:19:31+00
- nanopolish                    | 0.11.3                          | 0.12.2                          | Andreas Tille                                                             | Steffen Moeller        | 2019-12-22 12:49:21+00
- ncbi-blast+                   | 2.9.0                           | 2.10.0                          | Aaron M. Ucko,Andreas Tille,Olivier Sallou                                | Aaron M. Ucko          | 2020-02-17 01:50:53+00
- ncbi-vdb                      | 2.10.3                          | 2.10.4                          | Andreas Tille                                                             | Andreas Tille          | 2020-02-24 21:12:17+00
- nibabel                       | 3.0.1                           | 3.0.2                           | Michael Hanke,Yaroslav Halchenko                                          | Andreas Tille          | 2020-03-03 14:58:34+00
- plink2                        | 2.00~a3-200217                  | 200311                          | Dylan Aïssi                                                              | Dylan Aïssi           | 2020-02-19 06:19:18+00
- pynn                          | 0.7.5                           | 0.9.5                           | Michael Hanke,Yaroslav Halchenko                                          | Andreas Tille          | 2020-03-20 11:00:12+00
- python-bids-validator         | 1.2.4                           | 1.4.4                           | Yaroslav Halchenko                                                        | Yaroslav Halchenko     | 2019-08-17 19:00:11+00
- python-colormap               | 1.0.2                           | 1.0.3                           | Andreas Tille                                                             | Andreas Tille          | 2019-12-06 16:51:43+00
- python-pbcommand              | 1.1.1+git20191122.ec024c3       | 1.1.1+git20200313.2a40099       | Andreas Tille                                                             | Andreas Tille          | 2019-12-19 08:42:03+00
- python-pbcore                 | 1.7.1+git20200206.d66cbbf       | 1.7.1+git20200313.41ba394       | Andreas Tille                                                             | Andreas Tille          | 2020-02-25 08:42:20+00
- python-schema-salad           | 5.0.20200220195218              | 5.0.20200302192450              | Michael R. Crusoe                                                         | Michael R. Crusoe      | 2020-02-27 19:19:53+00
- q2-cutadapt                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                         | Liubov Chuprikova      | 2020-01-26 07:34:32+00
- q2-demux                      | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                         | Liubov Chuprikova      | 2020-01-26 07:34:40+00
- q2-feature-classifier         | 2019.4.0                        | 2020.2.0                        | Liubov Chuprikova                                                         | Liubov Chuprikova      | 2019-11-11 10:00:33+00
- q2-feature-table              | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                         | Liubov Chuprikova      | 2020-01-26 07:49:21+00
- q2-metadata                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                         | Andreas Tille          | 2020-02-03 08:42:28+00
- q2-quality-filter             | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                         | Liubov Chuprikova      | 2020-01-26 07:34:49+00
- q2templates                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                         | Liubov Chuprikova      | 2019-11-14 22:00:17+00
- q2-types                      | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                         | Liubov Chuprikova      | 2019-12-23 20:39:42+00
- qiime                         | 2019.10.0                       | 2020.2.0                        | Andreas Tille,Liubov Chuprikova,Steffen Moeller                           | Liubov Chuprikova      | 2019-12-16 09:51:27+00
- relion                        | 1.4                             | 3.0.8                           | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher | Andreas Tille          | 2018-06-14 12:49:40+00
- resfinder-db                  | 0.0+git20191001.149209d         | 0.0+git20200318.d6f36d3         | Andreas Tille                                                             | Andreas Tille          | 2019-11-16 23:00:12+00
- salmon                        | 0.12.0                          | 1.1.0                           | Kevin Murray,Michael R. Crusoe                                            | Andreas Tille          | 2018-12-13 19:05:56+00
- samblaster                    | 0.1.24                          | 0.1.25                          | Steffen Moeller                                                           | Andreas Tille          | 2019-01-22 08:49:17+00
- seaview                       | 4.7                             | 5.0.1                           | Andreas Tille,Charles Plessy                                              | Andreas Tille          | 2018-05-09 13:43:40+00
- skesa                         | 2.3.0                           | 2.4.0                           | Andreas Tille                                                             | Andreas Tille          | 2019-08-20 14:49:33+00
- snakemake                     | 5.10.0                          | 5.11.1                          | Kevin Murray                                                              | Alexandre Mestiashvili | 2020-02-11 12:50:42+00
- spoa                          | 3.0.1                           | 3.0.2                           | Andreas Tille                                                             | Andreas Tille          | 2019-09-16 11:53:05+00
- sra-sdk                       | 2.9.3                           | 2.10.4                          | Andreas Tille,Charles Plessy                                              | Steffen Moeller        | 2018-10-23 20:40:02+00
- stacks                        | 2.41                            | 2.52                            | Andreas Tille,Tim Booth                                                   | Andreas Tille          | 2019-07-12 19:11:30+00
- sumatra                       | 1.0.31                          | 1.0.34                          | Andreas Tille,Tim Booth                                                   | Andreas Tille          | 2018-10-16 10:06:33+00
- t-coffee                      | 12.00.7fb08c2                   | 13.41.0.28bdc39                 | Andreas Tille,Steffen Moeller                                             | Andreas Tille          | 2019-02-15 07:57:10+00
- tnseq-transit                 | 3.0.2                           | 3.1.0                           | Andreas Tille                                                             | Steffen Moeller        | 2020-01-18 22:25:05+00
- vsearch                       | 2.14.1                          | 2.14.2                          | Andreas Tille,Tim Booth                                                   | Andreas Tille          | 2019-12-17 10:07:09+00
- xmedcon                       | 0.16.1                          | 0.16.2                          | Andreas Tille,Roland Marcus Rutschmann                                    | Andreas Tille          | 2019-01-25 18:23:59+00
-(68 rows)
+ source                        |             version             |        upstream_version         |                      uploaders                                            | Last uploader        |     Last uploaded      
+-------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+----------------------+------------------------
+ andi                          | 0.12                            | 0.13                            | Fabian Klötzl                                                            | Andreas Tille        | 2018-10-27 17:50:30+00
+ artemis                       | 17.0.1                          | 18.1.0                          | Andreas Tille                                                             | Andreas Tille        | 2019-02-08 11:19:24+00
+ baitfisher                    | 1.2.7+git20180107.e92dbf2       | 1.2.7+git20190123.241d060       | Olivier Sallou                                                            | Andreas Tille        | 2018-09-24 13:04:18+00
+ beagle                        | 5.1-191125                      | 200313                          | Dylan Aïssi                                                              | Dylan Aïssi         | 2019-12-14 18:34:10+00
+ biobambam2                    | 2.0.153                         | 2.0.159+ds                      | Andreas Tille                                                             | Andreas Tille        | 2020-02-05 13:20:41+00
+ biomaj3                       | 3.1.14                          | 3.1.16                          | Olivier Sallou                                                            | Olivier Sallou       | 2020-02-08 18:22:42+00
+ biomaj3-core                  | 3.0.19                          | 3.0.22                          | Olivier Sallou                                                            | Olivier Sallou       | 2019-11-12 11:20:23+00
+ biomaj3-process               | 3.0.15                          | 3.0.16                          | Olivier Sallou                                                            | Olivier Sallou       | 2019-11-12 11:20:38+00
+ biosig4c++                    | 1.9.5                           | 2.0.2                           | Michael Hanke,Yaroslav Halchenko                                          | Andreas Tille        | 2020-03-02 08:38:37+00
+ cwltool                       | 2.0.20200224214940              | 3.0.20200317203547              | Michael R. Crusoe                                                         | Michael R. Crusoe    | 2020-02-26 12:07:54+00
+ ea-utils                      | 1.1.2                           | 1.04.807                        | Andreas Tille,Tim Booth                                                   | Andreas Tille        | 2018-04-26 21:48:01+00
+ edfbrowser                    | 1.72                            | 1.73                            | Andreas Tille                                                             | Andreas Tille        | 2020-02-14 15:02:37+00
+ fis-gtm                       | 6.3-007                         | 6.3-010                         | Amul Shah,Andreas Tille                                                   | Amul Shah            | 2019-02-28 14:12:19+00
+ gatb-core                     | 1.4.1+git20191209.9398f28       | 1.4.1+git20200118.1dc23ff       | Andreas Tille,Nadiya Sitdykova                                            | Michael R. Crusoe    | 2020-02-17 14:52:30+00
+ gdcm                          | 3.0.4                           | 3.0.5                           | Gert Wollny,Sébastien Jodogne,Steve M. Robbins                           | Gert Wollny          | 2019-11-07 11:49:02+00
+ gmap                          | 2019-09-12                      | 2020-03-12                      | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman                        | Steffen Moeller      | 2019-12-30 12:37:15+00
+ hdmf                          | 1.5.4                           | 1.6.1                           | Yaroslav Halchenko                                                        | Yaroslav Halchenko   | 2020-02-03 03:01:25+00
+ hyphy                         | 2.5.1                           | 2.5.7                           | Andreas Tille                                                             | Andreas Tille        | 2020-01-07 21:19:50+00
+ igdiscover                    | 0.11                            | 0.12.2                          | Steffen Moeller                                                           | Andreas Tille        | 2019-09-06 07:04:02+00
+ igv                           | 2.4.17                          | 2.8.1                           | Andreas Tille,Olivier Sallou                                              | Andreas Tille        | 2019-01-30 15:11:57+00
+ imagej                        | 1.52r                           | 1.52u                           | David Miguel Susano Pinto                                                 | Andreas Tille        | 2019-12-04 14:55:11+00
+ ismrmrd                       | 1.4.0                           | 1.4.1                           | Ghislain Antony Vaillant                                                  | Andreas Tille        | 2019-01-26 07:49:20+00
+ jebl2                         | 0.1+git20180418.653eb83         | 0.1+git20190308.a98448e         | Andreas Tille                                                             | Andreas Tille        | 2018-07-05 12:05:57+00
+ kallisto                      | 0.46.1                          | 0.46.2                          | Andreas Tille                                                             | Michael R. Crusoe    | 2019-12-27 07:19:20+00
+ kineticstools                 | 0.6.1+git20180425.27a1878       | 0.6.1+git20190618.0ac41a0       | Andreas Tille                                                             | Andreas Tille        | 2019-02-14 13:26:09+00
+ king-probe                    | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant                              | Andreas Tille        | 2018-07-16 07:34:48+00
+ last-align                    | 1047                            | 1060                            | Andreas Tille,Charles Plessy                                              | Michael R. Crusoe    | 2020-01-24 15:34:18+00
+ libbioparser-dev              | 2.0.1                           | 2.1.2                           | Andreas Tille                                                             | Andreas Tille        | 2019-07-15 13:35:45+00
+ libedlib                      | 1.2.4                           | 1.2.6                           | Andreas Tille                                                             | Andreas Tille        | 2019-08-19 00:34:56+00
+ libjloda-java                 | 0.0+git20180523.cbaf6d1         | 0.0+git20200318.6fef1b7         | Andreas Tille                                                             | Andreas Tille        | 2018-05-25 21:49:43+00
+ libsis-base-java              | 18.09~pre1+git20180827.fe4953e  | 18.09~pre1+git20180928.45fbd31  | Andreas Tille,Olivier Sallou,Tim Booth                                    | Andreas Tille        | 2018-09-26 08:35:30+00
+ metaphlan2                    | 2.9.22                          | 2.96.1                          | Andreas Tille                                                             | Andreas Tille        | 2019-11-08 07:19:11+00
+ mummer                        | 3.23                            | 4.0.0~beta2                     | Andreas Tille,Charles Plessy,Steffen Moeller                              | Andreas Tille        | 2018-06-11 07:19:31+00
+ nanopolish                    | 0.11.3                          | 0.12.2                          | Andreas Tille                                                             | Steffen Moeller      | 2019-12-22 12:49:21+00
+ ncbi-blast+                   | 2.9.0                           | 2.10.0                          | Aaron M. Ucko,Andreas Tille,Olivier Sallou                                | Aaron M. Ucko        | 2020-02-17 01:50:53+00
+ ncbi-vdb                      | 2.10.3                          | 2.10.4                          | Andreas Tille                                                             | Andreas Tille        | 2020-02-24 21:12:17+00
+ nibabel                       | 3.0.1                           | 3.0.2                           | Michael Hanke,Yaroslav Halchenko                                          | Andreas Tille        | 2020-03-03 14:58:34+00
+ plink2                        | 2.00~a3-200217                  | 200321                          | Dylan Aïssi                                                              | Dylan Aïssi         | 2020-02-19 06:19:18+00
+ pynn                          | 0.7.5                           | 0.9.5                           | Michael Hanke,Yaroslav Halchenko                                          | Andreas Tille        | 2020-03-20 11:00:12+00
+ python-bids-validator         | 1.2.4                           | 1.4.4                           | Yaroslav Halchenko                                                        | Yaroslav Halchenko   | 2019-08-17 19:00:11+00
+ python-colormap               | 1.0.2                           | 1.0.3                           | Andreas Tille                                                             | Andreas Tille        | 2019-12-06 16:51:43+00
+ python-schema-salad           | 5.0.20200220195218              | 5.0.20200302192450              | Michael R. Crusoe                                                         | Michael R. Crusoe    | 2020-02-27 19:19:53+00
+ q2-demux                      | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                         | Liubov Chuprikova    | 2020-01-26 07:34:40+00
+ q2-metadata                   | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                         | Andreas Tille        | 2020-02-03 08:42:28+00
+ q2-types                      | 2019.10.0                       | 2020.2.0                        | Liubov Chuprikova                                                         | Liubov Chuprikova    | 2019-12-23 20:39:42+00
+ qiime                         | 2019.10.0                       | 2020.2.0                        | Andreas Tille,Liubov Chuprikova,Steffen Moeller                           | Liubov Chuprikova    | 2019-12-16 09:51:27+00
+ relion                        | 1.4                             | 3.0.8                           | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher | Andreas Tille        | 2018-06-14 12:49:40+00
+ resfinder-db                  | 0.0+git20191001.149209d         | 0.0+git20200318.d6f36d3         | Andreas Tille                                                             | Andreas Tille        | 2019-11-16 23:00:12+00
+ salmon                        | 0.12.0                          | 1.1.0                           | Kevin Murray,Michael R. Crusoe                                            | Andreas Tille        | 2018-12-13 19:05:56+00
+ seaview                       | 4.7                             | 5.0.1                           | Andreas Tille,Charles Plessy                                              | Andreas Tille        | 2018-05-09 13:43:40+00
+ skesa                         | 2.3.0                           | 2.4.0                           | Andreas Tille                                                             | Andreas Tille        | 2019-08-20 14:49:33+00
+ sra-sdk                       | 2.9.3                           | 2.10.4                          | Andreas Tille,Charles Plessy                                              | Steffen Moeller      | 2018-10-23 20:40:02+00
+ stacks                        | 2.41                            | 2.52                            | Andreas Tille,Tim Booth                                                   | Andreas Tille        | 2019-07-12 19:11:30+00
+ sumatra                       | 1.0.31                          | 1.0.34                          | Andreas Tille,Tim Booth                                                   | Andreas Tille        | 2018-10-16 10:06:33+00
+ t-coffee                      | 12.00.7fb08c2                   | 13.41.0.28bdc39                 | Andreas Tille,Steffen Moeller                                             | Andreas Tille        | 2019-02-15 07:57:10+00
+ tnseq-transit                 | 3.0.2                           | 3.1.0                           | Andreas Tille                                                             | Steffen Moeller      | 2020-01-18 22:25:05+00
+ xmedcon                       | 0.16.1                          | 0.16.2                          | Andreas Tille,Roland Marcus Rutschmann                                    | Andreas Tille        | 2019-01-25 18:23:59+00
+(57 rows)
 
 
  source                        |   id   | severity  |                                                                                           title                                                                                           
@@ -146,7 +135,6 @@ Last-Update: Sun, 22 Mar 2020 01:42:04 +0000
  htsjdk                        | 877590 | normal    | FTBFS: error: package org.testng does not exist
  htsjdk                        | 920588 | normal    | htsjdk: Autopkgtest for htsjdk
  htslib                        | 922860 | normal    | Packages do not contain the upstream README file
- idba                          | 909716 | minor     | idba: Please provide autopkgtest
  igraph                        | 953941 | serious   | igraph - Incomplete debian/copyright
  igv                           | 940606 | normal    | new upstream (2.6.3)
  insighttoolkit4               | 724711 | wishlist  | insighttoolkit4: Drops architecture support
@@ -277,5 +265,5 @@ Last-Update: Sun, 22 Mar 2020 01:42:04 +0000
  xmedcon                       | 671828 | normal    | xmedcon: Cannot open file with YBR photometric interpretation
  xmedcon                       | 779707 | normal    | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
  xmedcon                       | 924017 | normal    | desktop entry
-(202 rows)
+(201 rows)
 



View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f69334ffc7497715afd16a6ae61c4ff138f2525d

-- 
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f69334ffc7497715afd16a6ae61c4ff138f2525d
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