Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
f69334ff by Andreas Tille at 2020-03-22T13:44:21+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,17 +1,17 @@
-Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
+Last-Update: Sun, 22 Mar 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
- dcmtk | 179 | {imaging} |
+ dcmtk | 178 | {imaging} |
orthanc | 102 | {imaging,practice} |
- gdcm | 45 | {imaging-dev} |
- orthanc-wsi | 43 | {laboratory,practice,oncology,his,imaging} |
+ gdcm | 46 | {imaging-dev} |
+ orthanc-wsi | 43 | {laboratory,his,oncology,practice,imaging} |
amide | 35 | {imaging} |
htsjdk | 33 | {bio-dev} |
- dicomscope | 31 | {imaging} |
- dcm2niix | 29 | {imaging} |
- dicom3tools | 26 | {imaging} |
- gnumed-server | 20 | {practice} |
+ dcm2niix | 30 | {imaging} |
+ dicomscope | 29 | {imaging} |
+ dicom3tools | 25 | {imaging} |
+ gnumed-server | 19 | {practice} |
pixelmed | 18 | {imaging} |
gdcm | 16 | {imaging} |
minc-tools | 16 | {imaging} |
@@ -21,82 +21,81 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
openslide | 15 | {imaging} |
adun.app | 14 | {bio} |
insighttoolkit4 | 14 | {imaging-dev} |
- king | 14 | {imaging,typesetting} |
+ king | 14 | {typesetting,imaging} |
vtk-dicom | 14 | {imaging} |
ncbi-entrez-direct | 13 | {bio} |
+ plastimatch | 13 | {imaging} |
psychopy | 13 | {psychology} |
- plastimatch | 12 | {imaging} |
librg-utils-perl | 11 | {bio} |
- tree-puzzle | 11 | {bio-phylogeny,bio,cloud} |
+ tree-puzzle | 11 | {bio,bio-phylogeny,cloud} |
biosig4c++ | 10 | {imaging,physics} |
diamond-aligner | 10 | {bio} |
jebl2 | 10 | {bio-dev} |
mia | 10 | {imaging} |
norsp | 10 | {bio} |
radiant | 10 | {bio} |
+ staden | 10 | {bio} |
cgview | 9 | {bio} |
ea-utils | 9 | {bio} |
- fastlink | 9 | {bio,cloud} |
+ fastlink | 9 | {cloud,bio} |
king-probe | 9 | {bio} |
mipe | 9 | {bio,cloud} |
ncbi-seg | 9 | {bio} |
ngs-sdk | 9 | {bio-dev} |
paml | 9 | {bio} |
seqsero | 9 | {bio} |
- sortmerna | 9 | {bio} |
- staden | 9 | {bio} |
- ampliconnoise | 8 | {bio,cloud} |
- arden | 8 | {cloud,bio} |
+ ampliconnoise | 8 | {cloud,bio} |
+ arden | 8 | {bio,cloud} |
bppsuite | 8 | {bio} |
ecopcr | 8 | {bio} |
- gasic | 8 | {bio,cloud} |
+ gasic | 8 | {cloud,bio} |
gdcm | 8 | {imaging-dev} |
hunspell-en-med | 8 | {tools} |
jaligner | 8 | {bio} |
- libminc | 8 | {imaging-dev} |
maqview | 8 | {bio} |
mauve-aligner | 8 | {bio} |
melting | 8 | {cloud,bio} |
neobio | 8 | {bio,cloud} |
obitools | 8 | {bio} |
- phyutility | 8 | {bio,cloud} |
+ phyutility | 8 | {cloud,bio} |
piler | 8 | {bio} |
- sigma-align | 8 | {bio-phylogeny,cloud,bio} |
+ sigma-align | 8 | {cloud,bio-phylogeny,bio} |
alter-sequence-alignment | 7 | {bio} |
- anfo | 7 | {cloud,bio} |
+ anfo | 7 | {bio,cloud} |
biomaj3-cli | 7 | {cloud} |
bio-tradis | 7 | {bio-dev,bio} |
codonw | 7 | {bio} |
- daligner | 7 | {bio-ngs,bio} |
+ daligner | 7 | {bio,bio-ngs} |
dazzdb | 7 | {bio} |
dicompyler | 7 | {oncology} |
edtsurf | 7 | {bio} |
- embassy-domainatrix | 7 | {cloud,bio} |
- embassy-domalign | 7 | {bio,cloud} |
+ embassy-domainatrix | 7 | {bio,cloud} |
+ embassy-domalign | 7 | {cloud,bio} |
embassy-domsearch | 7 | {cloud,bio} |
estscan | 7 | {bio} |
fitgcp | 7 | {cloud,bio} |
freebayes | 7 | {bio} |
- freecontact | 7 | {cloud,bio} |
- idba | 7 | {bio,cloud} |
+ freecontact | 7 | {bio,cloud} |
lagan | 7 | {bio} |
+ libminc | 7 | {imaging-dev} |
lucy | 7 | {bio} |
microbegps | 7 | {bio} |
paraclu | 7 | {bio,cloud} |
- perm | 7 | {cloud,bio} |
+ perm | 7 | {bio,cloud} |
phast | 7 | {bio} |
placnet | 7 | {bio} |
poretools | 7 | {bio} |
predictprotein | 7 | {bio} |
- prime-phylo | 7 | {bio,cloud} |
+ prime-phylo | 7 | {cloud,bio} |
probabel | 7 | {bio,cloud} |
pscan-tfbs | 7 | {bio} |
sibsim4 | 7 | {bio,cloud} |
- treeview | 7 | {bio-phylogeny,bio} |
+ treeview | 7 | {bio,bio-phylogeny} |
abacas | 6 | {bio} |
assemblytics | 6 | {bio} |
baitfisher | 6 | {bio} |
beast2-mcmc | 6 | {bio} |
+ bio-rainbow | 6 | {bio} |
bitseq | 6 | {bio} |
canu | 6 | {bio} |
centrifuge | 6 | {bio} |
@@ -111,8 +110,9 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
libdivsufsort | 6 | {bio-dev} |
libncl | 6 | {bio} |
libpal-java | 6 | {bio-dev} |
- mapsembler2 | 6 | {cloud,bio} |
- mhap | 6 | {bio-ngs,bio} |
+ libsbml | 6 | {bio-dev} |
+ mapsembler2 | 6 | {bio,cloud} |
+ mhap | 6 | {bio,bio-ngs} |
mlv-smile | 6 | {bio,cloud} |
murasaki | 6 | {bio} |
orthanc-webviewer | 6 | {imaging} |
@@ -125,14 +125,13 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
seqtools | 6 | {bio} |
sickle | 6 | {bio} |
spread-phy | 6 | {bio,bio-phylogeny} |
- squizz | 6 | {cloud,bio} |
+ squizz | 6 | {bio,cloud} |
transtermhp | 6 | {bio} |
vsearch | 6 | {bio} |
zalign | 6 | {bio,cloud} |
andi | 5 | {bio} |
bandage | 5 | {bio} |
beads | 5 | {bio} |
- bio-rainbow | 5 | {bio} |
brig | 5 | {bio} |
clonalorigin | 5 | {bio} |
cluster3 | 5 | {bio} |
@@ -141,33 +140,31 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
ghmm | 5 | {bio} |
hinge | 5 | {bio} |
jellyfish1 | 5 | {bio} |
- jmodeltest | 5 | {bio,bio-phylogeny} |
+ jmodeltest | 5 | {bio-phylogeny,bio} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
- libsbml | 5 | {bio-dev} |
logol | 5 | {bio} |
maffilter | 5 | {bio} |
mptp | 5 | {bio} |
+ openslide | 5 | {imaging-dev} |
patman | 5 | {bio} |
phipack | 5 | {bio} |
plasmidseeker | 5 | {bio} |
- prottest | 5 | {bio-phylogeny,bio} |
+ prottest | 5 | {bio,bio-phylogeny} |
pymia | 5 | {imaging-dev} |
quorum | 5 | {bio} |
rdp-classifier | 5 | {bio} |
repeatmasker-recon | 5 | {bio} |
seer | 5 | {bio} |
- seqtools | 5 | {bio} |
sprai | 5 | {bio} |
tracetuner | 5 | {bio} |
tvc | 5 | {bio} |
- beast-mcmc | 4 | {bio,bio-phylogeny} |
+ beast-mcmc | 4 | {bio-phylogeny,bio} |
biomaj3-daemon | 4 | {bio} |
delly | 4 | {bio} |
dindel | 4 | {bio} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
metaphlan2 | 4 | {bio} |
- openslide | 4 | {imaging-dev} |
parsnp | 4 | {bio} |
pbdagcon | 4 | {bio} |
phybin | 4 | {bio} |
@@ -187,15 +184,15 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
velvetoptimiser | 4 | {bio} |
yaha | 4 | {bio} |
bart-view | 3 | {imaging} |
- blasr | 3 | {bio-ngs,bio} |
- getdata | 3 | {bio} |
+ blasr | 3 | {bio,bio-ngs} |
igor | 3 | {bio} |
+ libgff | 3 | {bio-dev} |
mrs | 3 | {bio} |
orthanc-dicomweb | 3 | {imaging} |
orthanc-mysql | 3 | {imaging} |
qcumber | 3 | {bio} |
qrisk2 | 3 | {practice} |
- rtax | 3 | {cloud,bio} |
+ rtax | 3 | {bio,cloud} |
segemehl | 3 | {bio} |
seqmagick | 3 | {bio} |
sga | 3 | {bio} |
@@ -205,11 +202,11 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
sumaclust | 3 | {bio} |
surankco | 3 | {bio} |
tnseq-transit | 3 | {bio} |
- biosig4c++ | 2 | {physics,imaging-dev} |
+ biosig4c++ | 2 | {imaging-dev,physics} |
ctn | 2 | {imaging-dev} |
+ getdata | 2 | {bio} |
kma | 2 | {bio} |
kmerresistance | 2 | {bio} |
- libgff | 2 | {bio-dev} |
libsmithwaterman | 2 | {bio} |
nanook | 2 | {bio} |
opencfu | 2 | {laboratory} |
@@ -217,6 +214,7 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
scrm | 2 | {bio} |
skesa | 2 | {bio} |
spaced | 2 | {bio} |
+ srf | 2 | {bio-dev} |
tree-puzzle | 2 | {bio,cloud,bio-phylogeny} |
varscan | 2 | {bio} |
volpack | 2 | {imaging-dev} |
@@ -224,9 +222,9 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
atropos | 1 | {bio} |
biosig4c++ | 1 | {imaging-dev,physics} |
blimps | 1 | {bio} |
- cufflinks | 1 | {cloud,bio} |
+ cufflinks | 1 | {bio,cloud} |
edflib | 1 | {imaging-dev} |
- embassy-phylip | 1 | {bio,cloud} |
+ embassy-phylip | 1 | {cloud,bio} |
fasta3 | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
@@ -244,13 +242,12 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
ragout | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
sift | 1 | {bio} |
- srf | 1 | {bio-dev} |
stringtie | 1 | {bio} |
thesias | 1 | {bio} |
trace2dbest | 1 | {bio} |
vtk-dicom | 1 | {imaging-dev} |
bambamc | 0 | {bio-dev} |
- biobambam2 | 0 | {bio,bio-dev} |
+ biobambam2 | 0 | {bio-dev,bio} |
biojava4-live | 0 | {bio-dev} |
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
@@ -297,14 +294,13 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
ngs-sdk | 0 | {bio-dev} |
nutsqlite | 0 | {tools} |
orthanc-imagej | 0 | {imaging} |
- oscar | 0 | {practice,data,tools} |
+ oscar | 0 | {data,practice,tools} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
python-deeptools | 0 | {bio,bio-dev} |
- python-py2bit | 0 | {bio-dev,bio} |
- python-pyani | 0 | {bio-dev} |
- relion | 0 | {bio-dev} |
+ python-py2bit | 0 | {bio,bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seqan | 0 | {bio-dev} |
@@ -316,5 +312,5 @@ Last-Update: Sun, 22 Mar 2020 01:42:03 +0000
spaln | 0 | {bio} |
trim-galore | 0 | {bio} |
varna | 0 | {bio} |
-(344 rows)
+(340 rows)
=====================================
outdated_med-packages.txt
=====================================
@@ -1,76 +1,65 @@
-Last-Update: Sun, 22 Mar 2020 01:42:04 +0000
+Last-Update: Sun, 22 Mar 2020 13:42:03 +0000
- source | version | upstream_version | uploaders | Last uploader | Last uploaded
--------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+------------------------+------------------------
- andi | 0.12 | 0.13 | Fabian Klötzl | Andreas Tille | 2018-10-27 17:50:30+00
- artemis | 17.0.1 | 18.1.0 | Andreas Tille | Andreas Tille | 2019-02-08 11:19:24+00
- baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
- beagle | 5.1-191125 | 200313 | Dylan Aïssi | Dylan Aïssi | 2019-12-14 18:34:10+00
- biobambam2 | 2.0.153 | 2.0.159+ds | Andreas Tille | Andreas Tille | 2020-02-05 13:20:41+00
- biomaj3 | 3.1.14 | 3.1.16 | Olivier Sallou | Olivier Sallou | 2020-02-08 18:22:42+00
- biomaj3-core | 3.0.19 | 3.0.22 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:23+00
- biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00
- biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00
- cwltool | 2.0.20200224214940 | 3.0.20200317203547 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00
- ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00
- edfbrowser | 1.72 | 1.73 | Andreas Tille | Andreas Tille | 2020-02-14 15:02:37+00
- fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00
- gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200118.1dc23ff | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00
- gdcm | 3.0.4 | 3.0.5 | Gert Wollny,Sébastien Jodogne,Steve M. Robbins | Gert Wollny | 2019-11-07 11:49:02+00
- gmap | 2019-09-12 | 2020-03-12 | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman | Steffen Moeller | 2019-12-30 12:37:15+00
- hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
- hyphy | 2.5.1 | 2.5.7 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00
- igdiscover | 0.11 | 0.12.2 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
- igv | 2.4.17 | 2.8.1 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
- imagej | 1.52r | 1.52u | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
- ismrmrd | 1.4.0 | 1.4.1 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-26 07:49:20+00
- jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
- kallisto | 0.46.1 | 0.46.2 | Andreas Tille | Michael R. Crusoe | 2019-12-27 07:19:20+00
- kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20190618.0ac41a0 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
- king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
- last-align | 1047 | 1060 | Andreas Tille,Charles Plessy | Michael R. Crusoe | 2020-01-24 15:34:18+00
- libbioparser-dev | 2.0.1 | 2.1.2 | Andreas Tille | Andreas Tille | 2019-07-15 13:35:45+00
- libedlib | 1.2.4 | 1.2.6 | Andreas Tille | Andreas Tille | 2019-08-19 00:34:56+00
- libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200318.6fef1b7 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
- libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
- metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
- mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00
- nanopolish | 0.11.3 | 0.12.2 | Andreas Tille | Steffen Moeller | 2019-12-22 12:49:21+00
- ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
- ncbi-vdb | 2.10.3 | 2.10.4 | Andreas Tille | Andreas Tille | 2020-02-24 21:12:17+00
- nibabel | 3.0.1 | 3.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-03 14:58:34+00
- plink2 | 2.00~a3-200217 | 200311 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
- pynn | 0.7.5 | 0.9.5 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-20 11:00:12+00
- python-bids-validator | 1.2.4 | 1.4.4 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
- python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
- python-pbcommand | 1.1.1+git20191122.ec024c3 | 1.1.1+git20200313.2a40099 | Andreas Tille | Andreas Tille | 2019-12-19 08:42:03+00
- python-pbcore | 1.7.1+git20200206.d66cbbf | 1.7.1+git20200313.41ba394 | Andreas Tille | Andreas Tille | 2020-02-25 08:42:20+00
- python-schema-salad | 5.0.20200220195218 | 5.0.20200302192450 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-27 19:19:53+00
- q2-cutadapt | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:32+00
- q2-demux | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:40+00
- q2-feature-classifier | 2019.4.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-11 10:00:33+00
- q2-feature-table | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:49:21+00
- q2-metadata | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Andreas Tille | 2020-02-03 08:42:28+00
- q2-quality-filter | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:49+00
- q2templates | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-11-14 22:00:17+00
- q2-types | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-23 20:39:42+00
- qiime | 2019.10.0 | 2020.2.0 | Andreas Tille,Liubov Chuprikova,Steffen Moeller | Liubov Chuprikova | 2019-12-16 09:51:27+00
- relion | 1.4 | 3.0.8 | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher | Andreas Tille | 2018-06-14 12:49:40+00
- resfinder-db | 0.0+git20191001.149209d | 0.0+git20200318.d6f36d3 | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
- salmon | 0.12.0 | 1.1.0 | Kevin Murray,Michael R. Crusoe | Andreas Tille | 2018-12-13 19:05:56+00
- samblaster | 0.1.24 | 0.1.25 | Steffen Moeller | Andreas Tille | 2019-01-22 08:49:17+00
- seaview | 4.7 | 5.0.1 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
- skesa | 2.3.0 | 2.4.0 | Andreas Tille | Andreas Tille | 2019-08-20 14:49:33+00
- snakemake | 5.10.0 | 5.11.1 | Kevin Murray | Alexandre Mestiashvili | 2020-02-11 12:50:42+00
- spoa | 3.0.1 | 3.0.2 | Andreas Tille | Andreas Tille | 2019-09-16 11:53:05+00
- sra-sdk | 2.9.3 | 2.10.4 | Andreas Tille,Charles Plessy | Steffen Moeller | 2018-10-23 20:40:02+00
- stacks | 2.41 | 2.52 | Andreas Tille,Tim Booth | Andreas Tille | 2019-07-12 19:11:30+00
- sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00
- t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
- tnseq-transit | 3.0.2 | 3.1.0 | Andreas Tille | Steffen Moeller | 2020-01-18 22:25:05+00
- vsearch | 2.14.1 | 2.14.2 | Andreas Tille,Tim Booth | Andreas Tille | 2019-12-17 10:07:09+00
- xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(68 rows)
+ source | version | upstream_version | uploaders | Last uploader | Last uploaded
+-------------------------------+---------------------------------+---------------------------------+---------------------------------------------------------------------------+----------------------+------------------------
+ andi | 0.12 | 0.13 | Fabian Klötzl | Andreas Tille | 2018-10-27 17:50:30+00
+ artemis | 17.0.1 | 18.1.0 | Andreas Tille | Andreas Tille | 2019-02-08 11:19:24+00
+ baitfisher | 1.2.7+git20180107.e92dbf2 | 1.2.7+git20190123.241d060 | Olivier Sallou | Andreas Tille | 2018-09-24 13:04:18+00
+ beagle | 5.1-191125 | 200313 | Dylan Aïssi | Dylan Aïssi | 2019-12-14 18:34:10+00
+ biobambam2 | 2.0.153 | 2.0.159+ds | Andreas Tille | Andreas Tille | 2020-02-05 13:20:41+00
+ biomaj3 | 3.1.14 | 3.1.16 | Olivier Sallou | Olivier Sallou | 2020-02-08 18:22:42+00
+ biomaj3-core | 3.0.19 | 3.0.22 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:23+00
+ biomaj3-process | 3.0.15 | 3.0.16 | Olivier Sallou | Olivier Sallou | 2019-11-12 11:20:38+00
+ biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00
+ cwltool | 2.0.20200224214940 | 3.0.20200317203547 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00
+ ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00
+ edfbrowser | 1.72 | 1.73 | Andreas Tille | Andreas Tille | 2020-02-14 15:02:37+00
+ fis-gtm | 6.3-007 | 6.3-010 | Amul Shah,Andreas Tille | Amul Shah | 2019-02-28 14:12:19+00
+ gatb-core | 1.4.1+git20191209.9398f28 | 1.4.1+git20200118.1dc23ff | Andreas Tille,Nadiya Sitdykova | Michael R. Crusoe | 2020-02-17 14:52:30+00
+ gdcm | 3.0.4 | 3.0.5 | Gert Wollny,Sébastien Jodogne,Steve M. Robbins | Gert Wollny | 2019-11-07 11:49:02+00
+ gmap | 2019-09-12 | 2020-03-12 | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman | Steffen Moeller | 2019-12-30 12:37:15+00
+ hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
+ hyphy | 2.5.1 | 2.5.7 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00
+ igdiscover | 0.11 | 0.12.2 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
+ igv | 2.4.17 | 2.8.1 | Andreas Tille,Olivier Sallou | Andreas Tille | 2019-01-30 15:11:57+00
+ imagej | 1.52r | 1.52u | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
+ ismrmrd | 1.4.0 | 1.4.1 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-26 07:49:20+00
+ jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
+ kallisto | 0.46.1 | 0.46.2 | Andreas Tille | Michael R. Crusoe | 2019-12-27 07:19:20+00
+ kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20190618.0ac41a0 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
+ king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
+ last-align | 1047 | 1060 | Andreas Tille,Charles Plessy | Michael R. Crusoe | 2020-01-24 15:34:18+00
+ libbioparser-dev | 2.0.1 | 2.1.2 | Andreas Tille | Andreas Tille | 2019-07-15 13:35:45+00
+ libedlib | 1.2.4 | 1.2.6 | Andreas Tille | Andreas Tille | 2019-08-19 00:34:56+00
+ libjloda-java | 0.0+git20180523.cbaf6d1 | 0.0+git20200318.6fef1b7 | Andreas Tille | Andreas Tille | 2018-05-25 21:49:43+00
+ libsis-base-java | 18.09~pre1+git20180827.fe4953e | 18.09~pre1+git20180928.45fbd31 | Andreas Tille,Olivier Sallou,Tim Booth | Andreas Tille | 2018-09-26 08:35:30+00
+ metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
+ mummer | 3.23 | 4.0.0~beta2 | Andreas Tille,Charles Plessy,Steffen Moeller | Andreas Tille | 2018-06-11 07:19:31+00
+ nanopolish | 0.11.3 | 0.12.2 | Andreas Tille | Steffen Moeller | 2019-12-22 12:49:21+00
+ ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
+ ncbi-vdb | 2.10.3 | 2.10.4 | Andreas Tille | Andreas Tille | 2020-02-24 21:12:17+00
+ nibabel | 3.0.1 | 3.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-03 14:58:34+00
+ plink2 | 2.00~a3-200217 | 200321 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
+ pynn | 0.7.5 | 0.9.5 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-20 11:00:12+00
+ python-bids-validator | 1.2.4 | 1.4.4 | Yaroslav Halchenko | Yaroslav Halchenko | 2019-08-17 19:00:11+00
+ python-colormap | 1.0.2 | 1.0.3 | Andreas Tille | Andreas Tille | 2019-12-06 16:51:43+00
+ python-schema-salad | 5.0.20200220195218 | 5.0.20200302192450 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-27 19:19:53+00
+ q2-demux | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2020-01-26 07:34:40+00
+ q2-metadata | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Andreas Tille | 2020-02-03 08:42:28+00
+ q2-types | 2019.10.0 | 2020.2.0 | Liubov Chuprikova | Liubov Chuprikova | 2019-12-23 20:39:42+00
+ qiime | 2019.10.0 | 2020.2.0 | Andreas Tille,Liubov Chuprikova,Steffen Moeller | Liubov Chuprikova | 2019-12-16 09:51:27+00
+ relion | 1.4 | 3.0.8 | Andreas Tille,Goswin von Brederlow,Navid Fehrenbacher,Roland Fehrenbacher | Andreas Tille | 2018-06-14 12:49:40+00
+ resfinder-db | 0.0+git20191001.149209d | 0.0+git20200318.d6f36d3 | Andreas Tille | Andreas Tille | 2019-11-16 23:00:12+00
+ salmon | 0.12.0 | 1.1.0 | Kevin Murray,Michael R. Crusoe | Andreas Tille | 2018-12-13 19:05:56+00
+ seaview | 4.7 | 5.0.1 | Andreas Tille,Charles Plessy | Andreas Tille | 2018-05-09 13:43:40+00
+ skesa | 2.3.0 | 2.4.0 | Andreas Tille | Andreas Tille | 2019-08-20 14:49:33+00
+ sra-sdk | 2.9.3 | 2.10.4 | Andreas Tille,Charles Plessy | Steffen Moeller | 2018-10-23 20:40:02+00
+ stacks | 2.41 | 2.52 | Andreas Tille,Tim Booth | Andreas Tille | 2019-07-12 19:11:30+00
+ sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00
+ t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
+ tnseq-transit | 3.0.2 | 3.1.0 | Andreas Tille | Steffen Moeller | 2020-01-18 22:25:05+00
+ xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
+(57 rows)
source | id | severity | title
@@ -146,7 +135,6 @@ Last-Update: Sun, 22 Mar 2020 01:42:04 +0000
htsjdk | 877590 | normal | FTBFS: error: package org.testng does not exist
htsjdk | 920588 | normal | htsjdk: Autopkgtest for htsjdk
htslib | 922860 | normal | Packages do not contain the upstream README file
- idba | 909716 | minor | idba: Please provide autopkgtest
igraph | 953941 | serious | igraph - Incomplete debian/copyright
igv | 940606 | normal | new upstream (2.6.3)
insighttoolkit4 | 724711 | wishlist | insighttoolkit4: Drops architecture support
@@ -277,5 +265,5 @@ Last-Update: Sun, 22 Mar 2020 01:42:04 +0000
xmedcon | 671828 | normal | xmedcon: Cannot open file with YBR photometric interpretation
xmedcon | 779707 | normal | Errors when reading dicomdir file: "No images found" / "Loading: DICM Error reading file"
xmedcon | 924017 | normal | desktop entry
-(202 rows)
+(201 rows)
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f69334ffc7497715afd16a6ae61c4ff138f2525d
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/f69334ffc7497715afd16a6ae61c4ff138f2525d
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