Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
163d14f5 by Andreas Tille at 2020-03-24T13:45:48+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,79 +1,83 @@
-Last-Update: Tue, 24 Mar 2020 01:42:04 +0000
+Last-Update: Tue, 24 Mar 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+--------------------------------------------+----------------------------------------------------------------------
- dcmtk | 173 | {imaging} |
- orthanc | 102 | {practice,imaging} |
- gdcm | 46 | {imaging-dev} |
+ dcmtk | 169 | {imaging} |
+ orthanc | 101 | {practice,imaging} |
+ gdcm | 47 | {imaging-dev} |
orthanc-wsi | 43 | {his,imaging,oncology,laboratory,practice} |
- amide | 33 | {imaging} |
- htsjdk | 33 | {bio-dev} |
+ amide | 35 | {imaging} |
+ htsjdk | 34 | {bio-dev} |
dcm2niix | 30 | {imaging} |
- dicomscope | 29 | {imaging} |
+ dicomscope | 28 | {imaging} |
dicom3tools | 24 | {imaging} |
- gnumed-server | 19 | {practice} |
+ gnumed-server | 18 | {practice} |
pixelmed | 17 | {imaging} |
+ invesalius | 16 | {imaging} |
+ minc-tools | 16 | {imaging} |
ngs-sdk | 16 | {bio-dev} |
biojava-live | 15 | {bio-dev} |
gdcm | 15 | {imaging} |
- invesalius | 15 | {imaging} |
- minc-tools | 15 | {imaging} |
openslide | 15 | {imaging} |
- adun.app | 14 | {bio} |
insighttoolkit4 | 13 | {imaging-dev} |
+ ncbi-entrez-direct | 13 | {bio} |
psychopy | 13 | {psychology} |
vtk-dicom | 13 | {imaging} |
+ adun.app | 12 | {bio} |
king | 12 | {imaging,typesetting} |
- ncbi-entrez-direct | 12 | {bio} |
- jebl2 | 11 | {bio-dev} |
- plastimatch | 11 | {imaging} |
+ cgview | 11 | {bio} |
+ staden | 11 | {bio} |
tree-puzzle | 11 | {bio-phylogeny,cloud,bio} |
- cgview | 10 | {bio} |
diamond-aligner | 10 | {bio} |
+ ea-utils | 10 | {bio} |
+ jebl2 | 10 | {bio-dev} |
+ king-probe | 10 | {bio} |
librg-utils-perl | 10 | {bio} |
mia | 10 | {imaging} |
norsp | 10 | {bio} |
- staden | 10 | {bio} |
+ plastimatch | 10 | {imaging} |
+ radiant | 10 | {bio} |
biosig4c++ | 9 | {physics,imaging} |
- ea-utils | 9 | {bio} |
+ bppsuite | 9 | {bio} |
+ dazzdb | 9 | {bio} |
fastlink | 9 | {bio,cloud} |
- king-probe | 9 | {bio} |
+ gdcm | 9 | {imaging-dev} |
mipe | 9 | {cloud,bio} |
ncbi-seg | 9 | {bio} |
+ obitools | 9 | {bio} |
paml | 9 | {bio} |
- radiant | 9 | {bio} |
ampliconnoise | 8 | {bio,cloud} |
- bppsuite | 8 | {bio} |
- dazzdb | 8 | {bio} |
+ arden | 8 | {cloud,bio} |
+ biomaj3-cli | 8 | {cloud} |
ecopcr | 8 | {bio} |
- gdcm | 8 | {imaging-dev} |
+ embassy-domainatrix | 8 | {bio,cloud} |
+ freecontact | 8 | {cloud,bio} |
hunspell-en-med | 8 | {tools} |
- libminc | 8 | {imaging-dev} |
maqview | 8 | {bio} |
mauve-aligner | 8 | {bio} |
melting | 8 | {bio,cloud} |
neobio | 8 | {cloud,bio} |
ngs-sdk | 8 | {bio-dev} |
- obitools | 8 | {bio} |
+ phast | 8 | {bio} |
phyutility | 8 | {bio,cloud} |
piler | 8 | {bio} |
+ prime-phylo | 8 | {bio,cloud} |
+ pscan-tfbs | 8 | {bio} |
seqsero | 8 | {bio} |
sigma-align | 8 | {bio-phylogeny,bio,cloud} |
+ abacas | 7 | {bio} |
alter-sequence-alignment | 7 | {bio} |
anfo | 7 | {cloud,bio} |
- arden | 7 | {cloud,bio} |
- biomaj3-cli | 7 | {cloud} |
bio-tradis | 7 | {bio,bio-dev} |
+ bitseq | 7 | {bio} |
codonw | 7 | {bio} |
daligner | 7 | {bio-ngs,bio} |
edtsurf | 7 | {bio} |
- embassy-domainatrix | 7 | {bio,cloud} |
embassy-domalign | 7 | {cloud,bio} |
embassy-domsearch | 7 | {bio,cloud} |
estscan | 7 | {bio} |
fitgcp | 7 | {cloud,bio} |
freebayes | 7 | {bio} |
- freecontact | 7 | {cloud,bio} |
gasic | 7 | {bio,cloud} |
jaligner | 7 | {bio} |
lagan | 7 | {bio} |
@@ -82,19 +86,18 @@ Last-Update: Tue, 24 Mar 2020 01:42:04 +0000
microbegps | 7 | {bio} |
paraclu | 7 | {cloud,bio} |
perm | 7 | {bio,cloud} |
- phast | 7 | {bio} |
placnet | 7 | {bio} |
poretools | 7 | {bio} |
predictprotein | 7 | {bio} |
- prime-phylo | 7 | {bio,cloud} |
probabel | 7 | {bio,cloud} |
- pscan-tfbs | 7 | {bio} |
+ saint | 7 | {bio} |
+ seqtools | 7 | {bio} |
sibsim4 | 7 | {bio,cloud} |
- abacas | 6 | {bio} |
+ andi | 6 | {bio} |
baitfisher | 6 | {bio} |
beast2-mcmc | 6 | {bio} |
+ biomaj3-daemon | 6 | {bio} |
bio-rainbow | 6 | {bio} |
- bitseq | 6 | {bio} |
canu | 6 | {bio} |
centrifuge | 6 | {bio} |
clonalframeml | 6 | {bio} |
@@ -106,7 +109,7 @@ Last-Update: Tue, 24 Mar 2020 01:42:04 +0000
indelible | 6 | {bio} |
ipig | 6 | {bio} |
jellyfish1 | 6 | {bio} |
- libdivsufsort | 6 | {bio-dev} |
+ libminc | 6 | {imaging-dev} |
libncl | 6 | {bio} |
libpal-java | 6 | {bio-dev} |
mapsembler2 | 6 | {bio,cloud} |
@@ -115,24 +118,23 @@ Last-Update: Tue, 24 Mar 2020 01:42:04 +0000
orthanc-webviewer | 6 | {imaging} |
proalign | 6 | {bio,bio-phylogeny} |
pscan-chip | 6 | {bio} |
+ quorum | 6 | {bio} |
rambo-k | 6 | {bio} |
rdp-readseq | 6 | {bio} |
- saint | 6 | {bio} |
scythe | 6 | {bio} |
seqtools | 6 | {bio} |
sickle | 6 | {bio} |
spread-phy | 6 | {bio,bio-phylogeny} |
squizz | 6 | {cloud,bio} |
+ tracetuner | 6 | {bio} |
transtermhp | 6 | {bio} |
treeview | 6 | {bio-phylogeny,bio} |
vsearch | 6 | {bio} |
zalign | 6 | {bio,cloud} |
- andi | 5 | {bio} |
assemblytics | 5 | {bio} |
bandage | 5 | {bio} |
beads | 5 | {bio} |
beast-mcmc | 5 | {bio,bio-phylogeny} |
- biomaj3-daemon | 5 | {bio} |
brig | 5 | {bio} |
clonalorigin | 5 | {bio} |
cluster3 | 5 | {bio} |
@@ -141,6 +143,7 @@ Last-Update: Tue, 24 Mar 2020 01:42:04 +0000
ghmm | 5 | {bio} |
hinge | 5 | {bio} |
jmodeltest | 5 | {bio,bio-phylogeny} |
+ libdivsufsort | 5 | {bio-dev} |
librdp-taxonomy-tree-java | 5 | {bio-dev} |
libsbml | 5 | {bio-dev} |
logol | 5 | {bio} |
@@ -152,13 +155,12 @@ Last-Update: Tue, 24 Mar 2020 01:42:04 +0000
phipack | 5 | {bio} |
prottest | 5 | {bio-phylogeny,bio} |
pymia | 5 | {imaging-dev} |
- quorum | 5 | {bio} |
rdp-classifier | 5 | {bio} |
repeatmasker-recon | 5 | {bio} |
seer | 5 | {bio} |
sprai | 5 | {bio} |
- tracetuner | 5 | {bio} |
tvc | 5 | {bio} |
+ blasr | 4 | {bio,bio-ngs} |
delly | 4 | {bio} |
dindel | 4 | {bio} |
fastml | 4 | {bio} |
@@ -176,6 +178,7 @@ Last-Update: Tue, 24 Mar 2020 01:42:04 +0000
runcircos-gui | 4 | {bio} |
salmon | 4 | {bio} |
samblaster | 4 | {bio} |
+ sga | 4 | {bio} |
soapaligner | 4 | {bio} |
soapsnp | 4 | {bio} |
sumatra | 4 | {bio} |
@@ -184,25 +187,21 @@ Last-Update: Tue, 24 Mar 2020 01:42:04 +0000
velvetoptimiser | 4 | {bio} |
yaha | 4 | {bio} |
bart-view | 3 | {imaging} |
- blasr | 3 | {bio,bio-ngs} |
igor | 3 | {bio} |
libgff | 3 | {bio-dev} |
mrs | 3 | {bio} |
orthanc-dicomweb | 3 | {imaging} |
orthanc-mysql | 3 | {imaging} |
- qcumber | 3 | {bio} |
- qrisk2 | 3 | {practice} |
+ relion | 3 | {bio} |
rtax | 3 | {cloud,bio} |
segemehl | 3 | {bio} |
seqmagick | 3 | {bio} |
- sga | 3 | {bio} |
snap-aligner | 3 | {bio} |
stacks | 3 | {bio} |
suitename | 3 | {bio} |
sumaclust | 3 | {bio} |
surankco | 3 | {bio} |
tnseq-transit | 3 | {bio} |
- biosig4c++ | 2 | {imaging-dev,physics} |
ctn | 2 | {imaging-dev} |
cufflinks | 2 | {bio,cloud} |
getdata | 2 | {bio} |
@@ -211,7 +210,9 @@ Last-Update: Tue, 24 Mar 2020 01:42:04 +0000
libsmithwaterman | 2 | {bio} |
nanook | 2 | {bio} |
opencfu | 2 | {laboratory} |
- relion | 2 | {bio} |
+ papyrus | 2 | {imaging-dev} |
+ qcumber | 2 | {bio} |
+ qrisk2 | 2 | {practice} |
scrm | 2 | {bio} |
skesa | 2 | {bio} |
spaced | 2 | {bio} |
@@ -225,7 +226,6 @@ Last-Update: Tue, 24 Mar 2020 01:42:04 +0000
blimps | 1 | {bio} |
edflib | 1 | {imaging-dev} |
embassy-phylip | 1 | {cloud,bio} |
- fasta3 | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
libctapimkt | 1 | {practice} |
@@ -238,7 +238,6 @@ Last-Update: Tue, 24 Mar 2020 01:42:04 +0000
opensurgsim | 1 | {imaging-dev} |
orthanc-postgresql | 1 | {imaging} |
pal2nal | 1 | {bio} |
- papyrus | 1 | {imaging-dev} |
pilercr | 1 | {bio} |
ragout | 1 | {bio} |
samtools-legacy | 1 | {bio-dev} |
@@ -255,6 +254,7 @@ Last-Update: Tue, 24 Mar 2020 01:42:04 +0000
camp | 0 | {imaging-dev} |
emboss-explorer | 0 | {bio} |
emmax | 0 | {bio} |
+ fasta3 | 0 | {bio} |
fis-gtm | 0 | {his} |
freecontact | 0 | {bio-dev} |
gatb-core | 0 | {bio-dev} |
=====================================
outdated_med-packages.txt
=====================================
@@ -1,4 +1,4 @@
-Last-Update: Tue, 24 Mar 2020 01:42:04 +0000
+Last-Update: Tue, 24 Mar 2020 13:42:05 +0000
source | version | upstream_version | uploaders | Last uploader | Last uploaded
-------------------------------+---------------------------------+---------------------------------+-----------------------------------------------------------------------------+----------------------+------------------------
@@ -10,8 +10,10 @@ Last-Update: Tue, 24 Mar 2020 01:42:04 +0000
biosig4c++ | 1.9.5 | 2.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-02 08:38:37+00
ctdopts | 1.2 | 1.3 | Michael R. Crusoe | Michael R. Crusoe | 2018-02-28 12:34:26+00
cwltool | 2.0.20200224214940 | 3.0.20200317203547 | Michael R. Crusoe | Michael R. Crusoe | 2020-02-26 12:07:54+00
+ daligner | 1.0+git20200115.c2b47da | 1.0+git20200322.477d5b9 | Andreas Tille | Andreas Tille | 2020-01-28 10:34:12+00
dazzdb | 1.0+git20200115.d8adde7 | 1.0+git20200322.ba88d76 | Andreas Tille | Andreas Tille | 2020-01-23 16:34:35+00
dcm2niix | 1.0.20181125 | 1.0.20190902 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-30 10:04:52+00
+ diamond-aligner | 0.9.30 | 0.9.31 | Andreas Tille | Michael R. Crusoe | 2020-02-17 13:34:16+00
ea-utils | 1.1.2 | 1.04.807 | Andreas Tille,Tim Booth | Andreas Tille | 2018-04-26 21:48:01+00
edfbrowser | 1.72 | 1.73 | Andreas Tille | Andreas Tille | 2020-02-14 15:02:37+00
elastix | 4.9.0 | 5.0.0 | Gert Wollny,Steve M. Robbins | Andreas Tille | 2019-01-15 11:50:11+00
@@ -21,11 +23,9 @@ Last-Update: Tue, 24 Mar 2020 01:42:04 +0000
gmap | 2019-09-12 | 2020-03-12 | Alexandre Mestiashvili,Andreas Tille,Shaun Jackman | Steffen Moeller | 2019-12-30 12:37:15+00
hdmf | 1.5.4 | 1.6.1 | Yaroslav Halchenko | Yaroslav Halchenko | 2020-02-03 03:01:25+00
hyphy | 2.5.1 | 2.5.7 | Andreas Tille | Andreas Tille | 2020-01-07 21:19:50+00
- igdiscover | 0.11 | 0.12.2 | Steffen Moeller | Andreas Tille | 2019-09-06 07:04:02+00
imagej | 1.52r | 1.52u | David Miguel Susano Pinto | Andreas Tille | 2019-12-04 14:55:11+00
ismrmrd | 1.4.0 | 1.4.1 | Ghislain Antony Vaillant | Andreas Tille | 2019-01-26 07:49:20+00
jebl2 | 0.1+git20180418.653eb83 | 0.1+git20190308.a98448e | Andreas Tille | Andreas Tille | 2018-07-05 12:05:57+00
- kallisto | 0.46.1 | 0.46.2 | Andreas Tille | Michael R. Crusoe | 2019-12-27 07:19:20+00
kineticstools | 0.6.1+git20180425.27a1878 | 0.6.1+git20190618.0ac41a0 | Andreas Tille | Andreas Tille | 2019-02-14 13:26:09+00
king-probe | 2.16.160404+git20180613.a09b012 | 2.16.160404+git20200121.9b198c1 | Andreas Tille,Malihe Asemani,Michael Prisant | Andreas Tille | 2018-07-16 07:34:48+00
last-align | 1047 | 1060 | Andreas Tille,Charles Plessy | Michael R. Crusoe | 2020-01-24 15:34:18+00
@@ -36,7 +36,6 @@ Last-Update: Tue, 24 Mar 2020 01:42:04 +0000
libthread-pool | 2.0.1 | 2.0.2 | Andreas Tille | Andreas Tille | 2019-11-19 21:21:23+00
metaphlan2 | 2.9.22 | 2.96.1 | Andreas Tille | Andreas Tille | 2019-11-08 07:19:11+00
ncbi-blast+ | 2.9.0 | 2.10.0 | Aaron M. Ucko,Andreas Tille,Olivier Sallou | Aaron M. Ucko | 2020-02-17 01:50:53+00
- ncbi-vdb | 2.10.3 | 2.10.4 | Andreas Tille | Andreas Tille | 2020-02-24 21:12:17+00
nibabel | 3.0.1 | 3.0.2 | Michael Hanke,Yaroslav Halchenko | Andreas Tille | 2020-03-03 14:58:34+00
picard-tools | 2.18.25 | 2.22.1 | Andreas Tille,Charles Plessy,Olivier Sallou,Steffen Moeller,Vincent Danjean | Andreas Tille | 2019-02-04 09:20:37+00
plink2 | 2.00~a3-200217 | 200321 | Dylan Aïssi | Dylan Aïssi | 2020-02-19 06:19:18+00
@@ -61,7 +60,7 @@ Last-Update: Tue, 24 Mar 2020 01:42:04 +0000
sumatra | 1.0.31 | 1.0.34 | Andreas Tille,Tim Booth | Andreas Tille | 2018-10-16 10:06:33+00
t-coffee | 12.00.7fb08c2 | 13.41.0.28bdc39 | Andreas Tille,Steffen Moeller | Andreas Tille | 2019-02-15 07:57:10+00
xmedcon | 0.16.1 | 0.16.2 | Andreas Tille,Roland Marcus Rutschmann | Andreas Tille | 2019-01-25 18:23:59+00
-(59 rows)
+(58 rows)
source | id | severity | title
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/163d14f5afe582f08e6aee26d79d90f9795c926d
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/163d14f5afe582f08e6aee26d79d90f9795c926d
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