[med-svn] [Git][med-team/augur][master] 4 commits: routine-update: Rules-Requires-Root: no

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / augur


Commits:
654e4f48 by Andreas Tille at 2020-03-25T07:57:09+01:00
routine-update: Rules-Requires-Root: no

- - - - -
9b5824bf by Andreas Tille at 2020-03-25T07:57:12+01:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.

Fixes: lintian: upstream-metadata-file-is-missing
See-also: https://lintian.debian.org/tags/upstream-metadata-file-is-missing.html

- - - - -
63c84d92 by Andreas Tille at 2020-03-25T08:03:44+01:00
Fix formatting of manpage

- - - - -
5872d2fd by Andreas Tille at 2020-03-25T08:04:48+01:00
Upload to unstable

- - - - -


4 changed files:

- debian/augur.1
- debian/changelog
- debian/control
- + debian/upstream/metadata


Changes:

=====================================
debian/augur.1
=====================================
@@ -4,14 +4,12 @@
 augur \- pipeline components for real-time virus analysis
 .SH SYNOPSIS
 .B augur
-[\-h] {parse,filter,mask,align,tree,refine,ancestral,translate,reconstruct\-sequences,clades,traits,sequence\-traits,lbi,distance,titers,frequencies,export,validate,version,import}
+[\-h] {parse, filter, mask, align, tree, refine, ancestral, translate, reconstruct\-sequences, clades, traits, sequence\-traits, lbi, distance, titers, frequencies, export, validate, version, import}
 \&...
 .SH DESCRIPTION
 Augur: A bioinformatics toolkit for phylogenetic analysis.
 .SH OPTIONS
 .SS "positional arguments:"
-.IP
-{parse,filter,mask,align,tree,refine,ancestral,translate,reconstruct\-sequences,clades,traits,sequence\-traits,lbi,distance,titers,frequencies,export,validate,version,import}
 .TP
 parse
 Parse delimited fields from FASTA sequence names into


=====================================
debian/changelog
=====================================
@@ -1,3 +1,12 @@
+augur (6.4.2-2) unstable; urgency=medium
+
+  * Rules-Requires-Root: no (routine-update)
+  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
+    Repository-Browse.
+  * Fix formatting of manpage
+
+ -- Andreas Tille <tille at debian.org>  Wed, 25 Mar 2020 08:03:51 +0100
+
 augur (6.4.2-1) unstable; urgency=medium
 
   * Initial release (Closes: #954777)


=====================================
debian/control
=====================================
@@ -1,8 +1,8 @@
 Source: augur
-Section: science
-Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders: Andreas Tille <tille at debian.org>
+Section: science
+Priority: optional
 Build-Depends: debhelper-compat (= 12),
                dh-python,
                python3-all,
@@ -17,6 +17,7 @@ Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/augur
 Vcs-Git: https://salsa.debian.org/med-team/augur.git
 Homepage: https://github.com/nextstrain/augur
+Rules-Requires-Root: no
 
 Package: augur
 Architecture: all
@@ -24,7 +25,7 @@ Depends: ${python3:Depends},
          ${misc:Depends},
          python3-biopython,
          python3-boto (>= 2.38.0),
-         python3-cvxopt (>= 1.1.8),
+         python3-cvxopt,
          python3-dendropy,
          python3-jsonschema,
          python3-matplotlib (>= 1.5.1),


=====================================
debian/upstream/metadata
=====================================
@@ -0,0 +1,4 @@
+Bug-Database: https://github.com/nextstrain/augur/issues
+Bug-Submit: https://github.com/nextstrain/augur/issues/new
+Repository: https://github.com/nextstrain/augur.git
+Repository-Browse: https://github.com/nextstrain/augur



View it on GitLab: https://salsa.debian.org/med-team/augur/-/compare/4e706aef8f86a02e851e639cd4e5b8fe86c6ada9...5872d2fdffc6472f32b727017e98dbc8fb50c7d8

-- 
View it on GitLab: https://salsa.debian.org/med-team/augur/-/compare/4e706aef8f86a02e851e639cd4e5b8fe86c6ada9...5872d2fdffc6472f32b727017e98dbc8fb50c7d8
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