[med-svn] [Git][med-team/plink2][master] Bump changelogs

[Dylan Aïssi]

Dylan Aïssi pushed to branch master at Debian Med / plink2


Commits:
ac09b66d by Dylan Aïssi at 2020-03-27T08:45:47+01:00
Bump changelogs

- - - - -


2 changed files:

- debian/changelog
- debian/upstream.docs/upstream.changelog


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+plink2 (2.00~a3-200321+dfsg-1) UNRELEASED; urgency=medium
+
+  * New upstream release.
+
+ -- Dylan Aïssi <daissi at debian.org>  Fri, 27 Mar 2020 08:44:27 +0100
+
 plink2 (2.00~a3-200217+dfsg-1) unstable; urgency=medium
 
   * New upstream release.


=====================================
debian/upstream.docs/upstream.changelog
=====================================
@@ -1,6 +1,22 @@
 # Copy/Paste from https://www.cog-genomics.org/plink/2.0/
 
-17 Feb 2020: --bcf implemented.
+21 Mar 2020: Fixed --glm multiallelic-variant handling bugs that could occur when 'genotypic', 'hethom', 'dominant', 'recessive', 'interaction', or --tests was specified, and corrected 'dominant'/'recessive' documentation. It is no longer necessary to trim zero- (or other-constant-) dosage alleles from multiallelic variants to get --glm results for the other alleles.
+
+14 Mar: --make-pgen/--make-just-pvar 'vcfheader' column set added (this makes it possible to directly generate a valid sites-only VCF). Bgzipping of the .pvar file is not directly supported, but you can use a named pipe to accomplish that with low overhead.
+
+11 Mar: Fixed --glm segfault that could occur when no covariates were specified. VCF/BCF importers now default to compressing the temporary .pvar file, so that files with lots of INFO field content don't require a disproportionally large amount of free disk space to work with. --keep-autoconv now has a 'vzs' modifier to request compression of the .pvar file (and conversely, when --vcf/--bcf is used with bare --keep-autoconv, the .pvar is not compressed).
+
+10 Mar: Fixed --make-pgen segfault that occurred when phased dosages were present without any phased hardcalls.
+
+8 Mar: "--export bcf" implemented. VCF-export multiallelic HDS-force bugfixes. Added missing FILTER:fa header line to whole-genome 1000 Genomes phase 3 annotated .pvar files on Resources page.
+
+25 Feb: --ld multiallelic-phased data handling bugfix.
+
+22 Feb: --bcf n_allele=1 (ALT='.') bugfix.
+
+19 Feb: --bcf GQ/DP-filtering bugfixes. --vcf and --bcf now enforce VCF contig naming restrictions.
+
+17 Feb: --bcf implemented.
 
 11 Feb: "--vcf-half-call reference" works properly again (it was behaving like "--vcf-half-call error" in recent builds).
 



View it on GitLab: https://salsa.debian.org/med-team/plink2/-/commit/ac09b66d6e58edafb5a7d6c3bd202059933f3bdf

-- 
View it on GitLab: https://salsa.debian.org/med-team/plink2/-/commit/ac09b66d6e58edafb5a7d6c3bd202059933f3bdf
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