Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
73938f8a by Andreas Tille at 2020-05-01T13:45:39+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,166 +1,158 @@
-Last-Update: Fri, 01 May 2020 01:42:03 +0000
+Last-Update: Fri, 01 May 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 177 | {covid-19,imaging} |
- orthanc | 94 | {imaging,practice,covid-19} |
- gdcm | 49 | {imaging-dev} |
- orthanc-wsi | 38 | {his,covid-19,practice,oncology,imaging,laboratory} |
- dicomscope | 36 | {imaging} |
- dicom3tools | 33 | {imaging} |
+ dcmtk | 174 | {covid-19,imaging} |
+ orthanc | 93 | {practice,imaging,covid-19} |
+ gdcm | 48 | {imaging-dev} |
+ orthanc-wsi | 38 | {practice,covid-19,laboratory,imaging,oncology,his} |
+ dicomscope | 33 | {imaging} |
htsjdk | 32 | {bio-dev} |
- dcm2niix | 30 | {imaging} |
- gdcm | 29 | {covid-19,imaging} |
+ dicom3tools | 31 | {imaging} |
+ dcm2niix | 27 | {imaging} |
+ gdcm | 27 | {imaging,covid-19} |
openslide | 19 | {imaging} |
- gnumed-server | 18 | {practice,covid-19} |
- minc-tools | 18 | {imaging} |
pixelmed | 18 | {imaging} |
+ gnumed-server | 17 | {practice,covid-19} |
invesalius | 17 | {imaging} |
king | 17 | {imaging,typesetting} |
- hunspell-en-med | 16 | {tools} |
+ minc-tools | 17 | {imaging} |
ngs-sdk | 16 | {bio-dev} |
plastimatch | 16 | {imaging} |
- adun.app | 14 | {bio} |
biosig4c++ | 14 | {physics,imaging} |
- vtk-dicom | 14 | {imaging} |
- obitools | 12 | {bio} |
- gasic | 11 | {cloud,bio} |
+ hunspell-en-med | 14 | {tools} |
+ adun.app | 13 | {bio} |
+ vtk-dicom | 13 | {imaging} |
gdcm | 11 | {imaging-dev} |
+ obitools | 11 | {bio} |
insighttoolkit4 | 10 | {imaging-dev} |
jebl2 | 10 | {bio-dev} |
- ngs-sdk | 10 | {bio-dev} |
biojava-live | 9 | {bio-dev} |
- mipe | 9 | {cloud,bio} |
- ncbi-entrez-direct | 9 | {bio} |
- parsnp | 9 | {bio} |
+ gasic | 9 | {bio,cloud} |
+ ngs-sdk | 9 | {bio-dev} |
tree-puzzle | 9 | {bio-phylogeny,cloud,bio} |
- ampliconnoise | 8 | {cloud,bio} |
- ea-utils | 8 | {bio} |
- fitgcp | 8 | {bio,cloud} |
librg-utils-perl | 8 | {bio} |
melting | 8 | {bio,cloud} |
+ mipe | 8 | {cloud,bio} |
+ ncbi-entrez-direct | 8 | {bio} |
+ parsnp | 8 | {bio} |
+ ampliconnoise | 7 | {cloud,bio} |
cgview | 7 | {bio} |
- embassy-domainatrix | 7 | {cloud,bio} |
+ ea-utils | 7 | {bio} |
fastlink | 7 | {bio,cloud} |
- jaligner | 7 | {bio} |
- paml | 7 | {bio} |
- staden | 7 | {bio} |
+ fitgcp | 7 | {bio,cloud} |
alter-sequence-alignment | 6 | {bio} |
- arden | 6 | {cloud,bio} |
- biomaj3-cli | 6 | {cloud} |
- bio-tradis | 6 | {bio-dev,bio} |
- bppsuite | 6 | {bio} |
- cluster3 | 6 | {bio} |
- codonw | 6 | {bio} |
- dazzdb | 6 | {bio} |
- ecopcr | 6 | {bio} |
- edtsurf | 6 | {bio} |
- embassy-domalign | 6 | {cloud,bio} |
- embassy-domsearch | 6 | {bio,cloud} |
- freecontact | 6 | {bio,cloud} |
+ embassy-domainatrix | 6 | {cloud,bio} |
+ embassy-domsearch | 6 | {cloud,bio} |
indelible | 6 | {bio} |
+ jaligner | 6 | {bio} |
king-probe | 6 | {bio} |
libminc | 6 | {imaging-dev} |
- libncl | 6 | {bio} |
+ mapsembler2 | 6 | {cloud,bio} |
maqview | 6 | {bio} |
ncbi-seg | 6 | {bio} |
neobio | 6 | {bio,cloud} |
norsp | 6 | {bio} |
- phast | 6 | {bio} |
+ paml | 6 | {bio} |
piler | 6 | {bio} |
- prime-phylo | 6 | {bio,cloud} |
pymia | 6 | {imaging-dev} |
radiant | 6 | {bio} |
rambo-k | 6 | {bio} |
salmon | 6 | {bio} |
- seer | 6 | {bio} |
- seqsero | 6 | {bio} |
sibsim4 | 6 | {bio,cloud} |
- sigma-align | 6 | {cloud,bio,bio-phylogeny} |
- spread-phy | 6 | {bio-phylogeny,bio} |
- squizz | 6 | {cloud,bio} |
- anfo | 5 | {cloud,bio} |
- beads | 5 | {bio} |
- biomaj3-daemon | 5 | {bio} |
- bio-rainbow | 5 | {bio} |
- bitseq | 5 | {bio} |
- centrifuge | 5 | {bio} |
- clonalorigin | 5 | {bio} |
- daligner | 5 | {bio,bio-ngs} |
- delly | 5 | {covid-19,bio} |
- freebayes | 5 | {bio} |
- gatb-core | 5 | {bio} |
- harvest-tools | 5 | {bio} |
+ sigma-align | 6 | {bio-phylogeny,cloud,bio} |
+ spread-phy | 6 | {bio,bio-phylogeny} |
+ squizz | 6 | {bio,cloud} |
+ staden | 6 | {bio} |
+ arden | 5 | {bio,cloud} |
+ biomaj3-cli | 5 | {cloud} |
+ bio-tradis | 5 | {bio-dev,bio} |
+ bppsuite | 5 | {bio} |
+ cluster3 | 5 | {bio} |
+ codonw | 5 | {bio} |
+ dazzdb | 5 | {bio} |
+ ecopcr | 5 | {bio} |
+ edtsurf | 5 | {bio} |
+ embassy-domalign | 5 | {cloud,bio} |
+ freecontact | 5 | {bio,cloud} |
jellyfish1 | 5 | {bio} |
- lagan | 5 | {bio} |
- mapsembler2 | 5 | {bio,cloud} |
+ libncl | 5 | {bio} |
mhap | 5 | {bio-ngs,bio} |
microbegps | 5 | {bio} |
mrs | 5 | {bio} |
- paraclu | 5 | {bio,cloud} |
+ paraclu | 5 | {cloud,bio} |
+ phast | 5 | {bio} |
phybin | 5 | {bio} |
- phyutility | 5 | {bio,cloud} |
- placnet | 5 | {bio} |
+ phyutility | 5 | {cloud,bio} |
predictprotein | 5 | {bio} |
- probabel | 5 | {bio,cloud} |
+ prime-phylo | 5 | {bio,cloud} |
+ probabel | 5 | {cloud,bio} |
pscan-tfbs | 5 | {bio} |
psychopy | 5 | {psychology} |
rdp-alignment | 5 | {bio} |
rdp-readseq | 5 | {bio} |
- repeatmasker-recon | 5 | {bio} |
saint | 5 | {bio} |
- seqtools | 5 | {bio} |
+ seer | 5 | {bio} |
+ seqsero | 5 | {bio} |
sickle | 5 | {bio} |
- transrate-tools | 5 | {bio} |
- transtermhp | 5 | {bio} |
- treeview | 5 | {bio,bio-phylogeny} |
- zalign | 5 | {bio,cloud} |
- abacas | 4 | {bio,covid-19} |
- assemblytics | 4 | {bio} |
- baitfisher | 4 | {bio} |
- bandage | 4 | {bio} |
- beast-mcmc | 4 | {bio-phylogeny,bio} |
+ treeview | 5 | {bio-phylogeny,bio} |
+ zalign | 5 | {cloud,bio} |
+ anfo | 4 | {cloud,bio} |
+ beads | 4 | {bio} |
+ beast-mcmc | 4 | {bio,bio-phylogeny} |
+ biomaj3-daemon | 4 | {bio} |
+ bio-rainbow | 4 | {bio} |
+ bitseq | 4 | {bio} |
brig | 4 | {bio} |
- clonalframeml | 4 | {covid-19,bio} |
- dascrubber | 4 | {bio} |
+ centrifuge | 4 | {bio} |
+ clonalorigin | 4 | {bio} |
+ daligner | 4 | {bio,bio-ngs} |
+ delly | 4 | {bio,covid-19} |
dicompyler | 4 | {oncology} |
- dindel | 4 | {bio} |
- dwgsim | 4 | {bio} |
- estscan | 4 | {bio} |
- fastml | 4 | {bio} |
- fsm-lite | 4 | {bio} |
+ freebayes | 4 | {bio} |
+ gatb-core | 4 | {bio} |
+ harvest-tools | 4 | {bio} |
ipig | 4 | {bio} |
- jmodeltest | 4 | {bio-phylogeny,bio} |
+ jmodeltest | 4 | {bio,bio-phylogeny} |
+ lagan | 4 | {bio} |
libpal-java | 4 | {bio-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
libsbml | 4 | {bio-dev} |
libsmithwaterman | 4 | {bio} |
mauve-aligner | 4 | {bio} |
mencal | 4 | {tools} |
- murasaki | 4 | {bio} |
nutsqlite | 4 | {tools} |
orthanc-webviewer | 4 | {imaging} |
perm | 4 | {cloud,bio} |
+ placnet | 4 | {bio} |
poretools | 4 | {bio} |
proalign | 4 | {bio,bio-phylogeny} |
prottest | 4 | {bio-phylogeny,bio} |
- pscan-chip | 4 | {bio} |
rdp-classifier | 4 | {bio} |
relion | 4 | {bio} |
+ repeatmasker-recon | 4 | {bio} |
roguenarok | 4 | {bio} |
scythe | 4 | {bio} |
- segemehl | 4 | {bio} |
+ seqtools | 4 | {bio} |
sga | 4 | {bio} |
soapaligner | 4 | {bio} |
soapsnp | 4 | {bio} |
- sprai | 4 | {bio} |
- tnseq-transit | 4 | {bio,covid-19} |
- tracetuner | 4 | {bio} |
+ tnseq-transit | 4 | {covid-19,bio} |
+ transrate-tools | 4 | {bio} |
+ transtermhp | 4 | {bio} |
+ abacas | 3 | {bio,covid-19} |
+ assemblytics | 3 | {bio} |
+ baitfisher | 3 | {bio} |
+ bandage | 3 | {bio} |
bart-view | 3 | {imaging} |
canu | 3 | {bio} |
- elph | 3 | {bio} |
- ghmm | 3 | {bio} |
- hinge | 3 | {bio} |
+ clonalframeml | 3 | {covid-19,bio} |
+ dascrubber | 3 | {bio} |
+ dindel | 3 | {bio} |
+ dwgsim | 3 | {bio} |
+ estscan | 3 | {bio} |
+ fastml | 3 | {bio} |
+ fsm-lite | 3 | {bio} |
kma | 3 | {bio} |
kmerresistance | 3 | {bio} |
lamarc | 3 | {bio} |
@@ -170,33 +162,40 @@ Last-Update: Fri, 01 May 2020 01:42:03 +0000
metaphlan2 | 3 | {bio} |
mlv-smile | 3 | {bio,cloud} |
mptp | 3 | {bio} |
+ murasaki | 3 | {bio} |
openslide | 3 | {imaging-dev} |
- orthanc-dicomweb | 3 | {imaging,covid-19} |
+ orthanc-dicomweb | 3 | {covid-19,imaging} |
orthanc-mysql | 3 | {imaging} |
patman | 3 | {bio} |
pilon | 3 | {bio} |
+ pscan-chip | 3 | {bio} |
qcumber | 3 | {bio} |
qrisk2 | 3 | {practice} |
quorum | 3 | {bio} |
- rtax | 3 | {bio,cloud} |
+ rtax | 3 | {cloud,bio} |
runcircos-gui | 3 | {bio} |
- samblaster | 3 | {covid-19,bio} |
scrm | 3 | {bio} |
+ segemehl | 3 | {bio} |
seqmagick | 3 | {bio,covid-19} |
snap-aligner | 3 | {bio} |
spaced | 3 | {bio} |
+ sprai | 3 | {bio} |
stacks | 3 | {bio} |
suitename | 3 | {bio} |
surankco | 3 | {bio} |
+ tracetuner | 3 | {bio} |
velvetoptimiser | 3 | {bio} |
vsearch | 3 | {bio} |
yaha | 3 | {bio} |
beast2-mcmc | 2 | {bio} |
- biosig4c++ | 2 | {imaging-dev,physics} |
+ biosig4c++ | 2 | {physics,imaging-dev} |
ctn | 2 | {imaging-dev} |
- cufflinks | 2 | {bio,cloud} |
+ cufflinks | 2 | {cloud,bio} |
elastix | 2 | {imaging} |
+ elph | 2 | {bio} |
getdata | 2 | {bio} |
+ ghmm | 2 | {bio} |
+ hinge | 2 | {bio} |
libvistaio | 2 | {imaging-dev} |
logol | 2 | {bio} |
nanook | 2 | {bio} |
@@ -205,17 +204,17 @@ Last-Update: Fri, 01 May 2020 01:42:03 +0000
phipack | 2 | {bio} |
python-scitrack | 2 | {covid-19} |
rampler | 2 | {bio} |
+ samblaster | 2 | {covid-19,bio} |
skesa | 2 | {bio} |
srf | 2 | {bio-dev} |
- stringtie | 2 | {covid-19,bio} |
+ stringtie | 2 | {bio,covid-19} |
sweed | 2 | {bio} |
tvc | 2 | {bio} |
varscan | 2 | {bio,covid-19} |
atropos | 1 | {bio} |
- biobambam2 | 1 | {bio-dev,covid-19,bio} |
- blasr | 1 | {bio-ngs,bio} |
+ biobambam2 | 1 | {covid-19,bio-dev,bio} |
blimps | 1 | {bio} |
- embassy-phylip | 1 | {bio,cloud} |
+ embassy-phylip | 1 | {cloud,bio} |
emboss-explorer | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
@@ -227,7 +226,6 @@ Last-Update: Fri, 01 May 2020 01:42:03 +0000
orthanc-postgresql | 1 | {imaging} |
oscar | 1 | {data,tools,practice} |
papyrus | 1 | {imaging-dev} |
- pbdagcon | 1 | {bio} |
pilercr | 1 | {bio} |
plasmidseeker | 1 | {bio} |
python-py2bit | 1 | {bio,bio-dev} |
@@ -236,17 +234,18 @@ Last-Update: Fri, 01 May 2020 01:42:03 +0000
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
- spaln | 1 | {bio,covid-19} |
+ spaln | 1 | {covid-19,bio} |
trace2dbest | 1 | {bio} |
- tree-puzzle | 1 | {bio-phylogeny,cloud,bio} |
+ tree-puzzle | 1 | {cloud,bio,bio-phylogeny} |
volpack | 1 | {imaging-dev} |
- acedb | 0 | {cloud,bio} |
+ acedb | 0 | {bio,cloud} |
augur | 0 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
biojava4-live | 0 | {bio-dev} |
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
+ blasr | 0 | {bio-ngs,bio} |
camp | 0 | {imaging-dev} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
@@ -267,7 +266,7 @@ Last-Update: Fri, 01 May 2020 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {covid-19,imaging-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
@@ -289,16 +288,17 @@ Last-Update: Fri, 01 May 2020 01:42:03 +0000
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
+ pbdagcon | 0 | {bio} |
pbseqlib | 0 | {bio-dev} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {bio,covid-19} |
solvate | 0 | {bio} |
- thesias | 0 | {bio,covid-19} |
+ thesias | 0 | {covid-19,bio} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/73938f8a97bba824cd377a3cd68679fee6f1f119
--
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