Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
69d5d7e0 by Andreas Tille at 2020-05-02T13:45:04+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,16 +1,16 @@
-Last-Update: Sat, 02 May 2020 01:42:03 +0000
+Last-Update: Sat, 02 May 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 174 | {covid-19,imaging} |
+ dcmtk | 175 | {covid-19,imaging} |
orthanc | 93 | {practice,imaging,covid-19} |
- gdcm | 48 | {imaging-dev} |
- orthanc-wsi | 38 | {practice,covid-19,laboratory,imaging,oncology,his} |
+ gdcm | 44 | {imaging-dev} |
+ orthanc-wsi | 39 | {practice,covid-19,laboratory,imaging,oncology,his} |
dicomscope | 33 | {imaging} |
- htsjdk | 32 | {bio-dev} |
+ htsjdk | 33 | {bio-dev} |
dicom3tools | 31 | {imaging} |
- dcm2niix | 27 | {imaging} |
- gdcm | 27 | {imaging,covid-19} |
+ dcm2niix | 26 | {imaging} |
+ gdcm | 26 | {imaging,covid-19} |
openslide | 19 | {imaging} |
pixelmed | 18 | {imaging} |
gnumed-server | 17 | {practice,covid-19} |
@@ -19,37 +19,39 @@ Last-Update: Sat, 02 May 2020 01:42:03 +0000
minc-tools | 17 | {imaging} |
ngs-sdk | 16 | {bio-dev} |
plastimatch | 16 | {imaging} |
+ adun.app | 15 | {bio} |
biosig4c++ | 14 | {physics,imaging} |
- hunspell-en-med | 14 | {tools} |
- adun.app | 13 | {bio} |
+ hunspell-en-med | 13 | {tools} |
vtk-dicom | 13 | {imaging} |
gdcm | 11 | {imaging-dev} |
obitools | 11 | {bio} |
+ biojava-live | 10 | {bio-dev} |
insighttoolkit4 | 10 | {imaging-dev} |
jebl2 | 10 | {bio-dev} |
- biojava-live | 9 | {bio-dev} |
gasic | 9 | {bio,cloud} |
+ ncbi-entrez-direct | 9 | {bio} |
ngs-sdk | 9 | {bio-dev} |
- tree-puzzle | 9 | {bio-phylogeny,cloud,bio} |
librg-utils-perl | 8 | {bio} |
melting | 8 | {bio,cloud} |
mipe | 8 | {cloud,bio} |
- ncbi-entrez-direct | 8 | {bio} |
parsnp | 8 | {bio} |
+ tree-puzzle | 8 | {bio-phylogeny,cloud,bio} |
+ alter-sequence-alignment | 7 | {bio} |
ampliconnoise | 7 | {cloud,bio} |
cgview | 7 | {bio} |
ea-utils | 7 | {bio} |
fastlink | 7 | {bio,cloud} |
fitgcp | 7 | {bio,cloud} |
- alter-sequence-alignment | 6 | {bio} |
+ maqview | 7 | {bio} |
+ arden | 6 | {bio,cloud} |
+ dazzdb | 6 | {bio} |
embassy-domainatrix | 6 | {cloud,bio} |
+ embassy-domalign | 6 | {cloud,bio} |
embassy-domsearch | 6 | {cloud,bio} |
indelible | 6 | {bio} |
jaligner | 6 | {bio} |
king-probe | 6 | {bio} |
libminc | 6 | {imaging-dev} |
- mapsembler2 | 6 | {cloud,bio} |
- maqview | 6 | {bio} |
ncbi-seg | 6 | {bio} |
neobio | 6 | {bio,cloud} |
norsp | 6 | {bio} |
@@ -59,27 +61,31 @@ Last-Update: Sat, 02 May 2020 01:42:03 +0000
radiant | 6 | {bio} |
rambo-k | 6 | {bio} |
salmon | 6 | {bio} |
+ seer | 6 | {bio} |
sibsim4 | 6 | {bio,cloud} |
sigma-align | 6 | {bio-phylogeny,cloud,bio} |
spread-phy | 6 | {bio,bio-phylogeny} |
squizz | 6 | {bio,cloud} |
staden | 6 | {bio} |
- arden | 5 | {bio,cloud} |
+ zalign | 6 | {cloud,bio} |
+ anfo | 5 | {cloud,bio} |
+ beast-mcmc | 5 | {bio,bio-phylogeny} |
biomaj3-cli | 5 | {cloud} |
+ bio-rainbow | 5 | {bio} |
bio-tradis | 5 | {bio-dev,bio} |
bppsuite | 5 | {bio} |
cluster3 | 5 | {bio} |
codonw | 5 | {bio} |
- dazzdb | 5 | {bio} |
ecopcr | 5 | {bio} |
edtsurf | 5 | {bio} |
- embassy-domalign | 5 | {cloud,bio} |
freecontact | 5 | {bio,cloud} |
jellyfish1 | 5 | {bio} |
libncl | 5 | {bio} |
+ mapsembler2 | 5 | {cloud,bio} |
mhap | 5 | {bio-ngs,bio} |
microbegps | 5 | {bio} |
mrs | 5 | {bio} |
+ orthanc-webviewer | 5 | {imaging} |
paraclu | 5 | {cloud,bio} |
phast | 5 | {bio} |
phybin | 5 | {bio} |
@@ -92,16 +98,13 @@ Last-Update: Sat, 02 May 2020 01:42:03 +0000
rdp-alignment | 5 | {bio} |
rdp-readseq | 5 | {bio} |
saint | 5 | {bio} |
- seer | 5 | {bio} |
- seqsero | 5 | {bio} |
sickle | 5 | {bio} |
+ transrate-tools | 5 | {bio} |
+ transtermhp | 5 | {bio} |
treeview | 5 | {bio-phylogeny,bio} |
- zalign | 5 | {cloud,bio} |
- anfo | 4 | {cloud,bio} |
+ abacas | 4 | {bio,covid-19} |
beads | 4 | {bio} |
- beast-mcmc | 4 | {bio,bio-phylogeny} |
biomaj3-daemon | 4 | {bio} |
- bio-rainbow | 4 | {bio} |
bitseq | 4 | {bio} |
brig | 4 | {bio} |
centrifuge | 4 | {bio} |
@@ -122,7 +125,8 @@ Last-Update: Sat, 02 May 2020 01:42:03 +0000
mauve-aligner | 4 | {bio} |
mencal | 4 | {tools} |
nutsqlite | 4 | {tools} |
- orthanc-webviewer | 4 | {imaging} |
+ orthanc-dicomweb | 4 | {covid-19,imaging} |
+ orthanc-mysql | 4 | {imaging} |
perm | 4 | {cloud,bio} |
placnet | 4 | {bio} |
poretools | 4 | {bio} |
@@ -133,18 +137,18 @@ Last-Update: Sat, 02 May 2020 01:42:03 +0000
repeatmasker-recon | 4 | {bio} |
roguenarok | 4 | {bio} |
scythe | 4 | {bio} |
+ seqsero | 4 | {bio} |
seqtools | 4 | {bio} |
sga | 4 | {bio} |
soapaligner | 4 | {bio} |
soapsnp | 4 | {bio} |
+ stacks | 4 | {bio} |
tnseq-transit | 4 | {covid-19,bio} |
- transrate-tools | 4 | {bio} |
- transtermhp | 4 | {bio} |
- abacas | 3 | {bio,covid-19} |
assemblytics | 3 | {bio} |
baitfisher | 3 | {bio} |
bandage | 3 | {bio} |
bart-view | 3 | {imaging} |
+ beast2-mcmc | 3 | {bio} |
canu | 3 | {bio} |
clonalframeml | 3 | {covid-19,bio} |
dascrubber | 3 | {bio} |
@@ -164,8 +168,6 @@ Last-Update: Sat, 02 May 2020 01:42:03 +0000
mptp | 3 | {bio} |
murasaki | 3 | {bio} |
openslide | 3 | {imaging-dev} |
- orthanc-dicomweb | 3 | {covid-19,imaging} |
- orthanc-mysql | 3 | {imaging} |
patman | 3 | {bio} |
pilon | 3 | {bio} |
pscan-chip | 3 | {bio} |
@@ -180,14 +182,12 @@ Last-Update: Sat, 02 May 2020 01:42:03 +0000
snap-aligner | 3 | {bio} |
spaced | 3 | {bio} |
sprai | 3 | {bio} |
- stacks | 3 | {bio} |
suitename | 3 | {bio} |
surankco | 3 | {bio} |
tracetuner | 3 | {bio} |
velvetoptimiser | 3 | {bio} |
vsearch | 3 | {bio} |
yaha | 3 | {bio} |
- beast2-mcmc | 2 | {bio} |
biosig4c++ | 2 | {physics,imaging-dev} |
ctn | 2 | {imaging-dev} |
cufflinks | 2 | {cloud,bio} |
@@ -200,6 +200,7 @@ Last-Update: Sat, 02 May 2020 01:42:03 +0000
logol | 2 | {bio} |
nanook | 2 | {bio} |
ngs-sdk | 2 | {bio-dev} |
+ orthanc-postgresql | 2 | {imaging} |
pal2nal | 2 | {bio} |
phipack | 2 | {bio} |
python-scitrack | 2 | {covid-19} |
@@ -213,6 +214,7 @@ Last-Update: Sat, 02 May 2020 01:42:03 +0000
varscan | 2 | {bio,covid-19} |
atropos | 1 | {bio} |
biobambam2 | 1 | {covid-19,bio-dev,bio} |
+ blasr | 1 | {bio-ngs,bio} |
blimps | 1 | {bio} |
embassy-phylip | 1 | {cloud,bio} |
emboss-explorer | 1 | {bio} |
@@ -223,7 +225,6 @@ Last-Update: Sat, 02 May 2020 01:42:03 +0000
libsmithwaterman | 1 | {bio-dev} |
libxdf | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
- orthanc-postgresql | 1 | {imaging} |
oscar | 1 | {data,tools,practice} |
papyrus | 1 | {imaging-dev} |
pilercr | 1 | {bio} |
@@ -245,7 +246,6 @@ Last-Update: Sat, 02 May 2020 01:42:03 +0000
biojava4-live | 0 | {bio-dev} |
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
- blasr | 0 | {bio-ngs,bio} |
camp | 0 | {imaging-dev} |
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
@@ -290,6 +290,7 @@ Last-Update: Sat, 02 May 2020 01:42:03 +0000
pbcopper | 0 | {bio-dev} |
pbdagcon | 0 | {bio} |
pbseqlib | 0 | {bio-dev} |
+ pycoqc | 0 | {covid-19,bio} |
relion | 0 | {bio} |
relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
@@ -303,5 +304,5 @@ Last-Update: Sat, 02 May 2020 01:42:03 +0000
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
bustools | -1 | {bio} |
-(330 rows)
+(331 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/69d5d7e0c5b86f4a3a3c650e757d90be44524f4e
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/69d5d7e0c5b86f4a3a3c650e757d90be44524f4e
You're receiving this email because of your account on salsa.debian.org.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200502/2eefdd2f/attachment-0001.html>