Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
7644fccd by Andreas Tille at 2020-05-03T13:45:00+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,40 +1,40 @@
-Last-Update: Sun, 03 May 2020 01:42:03 +0000
+Last-Update: Sun, 03 May 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 175 | {covid-19,imaging} |
- orthanc | 93 | {practice,imaging,covid-19} |
- gdcm | 44 | {imaging-dev} |
- orthanc-wsi | 39 | {practice,covid-19,laboratory,imaging,oncology,his} |
+ dcmtk | 173 | {covid-19,imaging} |
+ orthanc | 92 | {practice,imaging,covid-19} |
+ gdcm | 46 | {imaging-dev} |
+ orthanc-wsi | 41 | {practice,covid-19,laboratory,imaging,oncology,his} |
dicomscope | 33 | {imaging} |
htsjdk | 33 | {bio-dev} |
- dicom3tools | 31 | {imaging} |
- dcm2niix | 26 | {imaging} |
+ dicom3tools | 32 | {imaging} |
gdcm | 26 | {imaging,covid-19} |
+ dcm2niix | 25 | {imaging} |
openslide | 19 | {imaging} |
pixelmed | 18 | {imaging} |
gnumed-server | 17 | {practice,covid-19} |
invesalius | 17 | {imaging} |
king | 17 | {imaging,typesetting} |
minc-tools | 17 | {imaging} |
+ plastimatch | 17 | {imaging} |
ngs-sdk | 16 | {bio-dev} |
- plastimatch | 16 | {imaging} |
- adun.app | 15 | {bio} |
+ adun.app | 14 | {bio} |
biosig4c++ | 14 | {physics,imaging} |
hunspell-en-med | 13 | {tools} |
vtk-dicom | 13 | {imaging} |
- gdcm | 11 | {imaging-dev} |
- obitools | 11 | {bio} |
+ gdcm | 12 | {imaging-dev} |
+ insighttoolkit4 | 11 | {imaging-dev} |
+ jebl2 | 11 | {bio-dev} |
biojava-live | 10 | {bio-dev} |
- insighttoolkit4 | 10 | {imaging-dev} |
- jebl2 | 10 | {bio-dev} |
- gasic | 9 | {bio,cloud} |
+ gasic | 10 | {bio,cloud} |
+ obitools | 10 | {bio} |
ncbi-entrez-direct | 9 | {bio} |
ngs-sdk | 9 | {bio-dev} |
+ parsnp | 9 | {bio} |
librg-utils-perl | 8 | {bio} |
melting | 8 | {bio,cloud} |
mipe | 8 | {cloud,bio} |
- parsnp | 8 | {bio} |
tree-puzzle | 8 | {bio-phylogeny,cloud,bio} |
alter-sequence-alignment | 7 | {bio} |
ampliconnoise | 7 | {cloud,bio} |
@@ -55,7 +55,7 @@ Last-Update: Sun, 03 May 2020 01:42:03 +0000
ncbi-seg | 6 | {bio} |
neobio | 6 | {bio,cloud} |
norsp | 6 | {bio} |
- paml | 6 | {bio} |
+ orthanc-webviewer | 6 | {imaging} |
piler | 6 | {bio} |
pymia | 6 | {imaging-dev} |
radiant | 6 | {bio} |
@@ -80,12 +80,13 @@ Last-Update: Sun, 03 May 2020 01:42:03 +0000
edtsurf | 5 | {bio} |
freecontact | 5 | {bio,cloud} |
jellyfish1 | 5 | {bio} |
- libncl | 5 | {bio} |
mapsembler2 | 5 | {cloud,bio} |
mhap | 5 | {bio-ngs,bio} |
microbegps | 5 | {bio} |
mrs | 5 | {bio} |
- orthanc-webviewer | 5 | {imaging} |
+ orthanc-dicomweb | 5 | {covid-19,imaging} |
+ orthanc-mysql | 5 | {imaging} |
+ paml | 5 | {bio} |
paraclu | 5 | {cloud,bio} |
phast | 5 | {bio} |
phybin | 5 | {bio} |
@@ -94,15 +95,17 @@ Last-Update: Sun, 03 May 2020 01:42:03 +0000
prime-phylo | 5 | {bio,cloud} |
probabel | 5 | {cloud,bio} |
pscan-tfbs | 5 | {bio} |
- psychopy | 5 | {psychology} |
rdp-alignment | 5 | {bio} |
rdp-readseq | 5 | {bio} |
saint | 5 | {bio} |
+ scythe | 5 | {bio} |
sickle | 5 | {bio} |
+ stacks | 5 | {bio} |
transrate-tools | 5 | {bio} |
transtermhp | 5 | {bio} |
treeview | 5 | {bio-phylogeny,bio} |
abacas | 4 | {bio,covid-19} |
+ bart-view | 4 | {imaging} |
beads | 4 | {bio} |
biomaj3-daemon | 4 | {bio} |
bitseq | 4 | {bio} |
@@ -111,49 +114,46 @@ Last-Update: Sun, 03 May 2020 01:42:03 +0000
clonalorigin | 4 | {bio} |
daligner | 4 | {bio,bio-ngs} |
delly | 4 | {bio,covid-19} |
- dicompyler | 4 | {oncology} |
freebayes | 4 | {bio} |
gatb-core | 4 | {bio} |
harvest-tools | 4 | {bio} |
ipig | 4 | {bio} |
jmodeltest | 4 | {bio,bio-phylogeny} |
lagan | 4 | {bio} |
+ libncl | 4 | {bio} |
libpal-java | 4 | {bio-dev} |
librdp-taxonomy-tree-java | 4 | {bio-dev} |
- libsbml | 4 | {bio-dev} |
libsmithwaterman | 4 | {bio} |
mauve-aligner | 4 | {bio} |
mencal | 4 | {tools} |
nutsqlite | 4 | {tools} |
- orthanc-dicomweb | 4 | {covid-19,imaging} |
- orthanc-mysql | 4 | {imaging} |
perm | 4 | {cloud,bio} |
placnet | 4 | {bio} |
poretools | 4 | {bio} |
proalign | 4 | {bio,bio-phylogeny} |
prottest | 4 | {bio-phylogeny,bio} |
+ psychopy | 4 | {psychology} |
rdp-classifier | 4 | {bio} |
relion | 4 | {bio} |
repeatmasker-recon | 4 | {bio} |
roguenarok | 4 | {bio} |
- scythe | 4 | {bio} |
seqsero | 4 | {bio} |
seqtools | 4 | {bio} |
sga | 4 | {bio} |
soapaligner | 4 | {bio} |
soapsnp | 4 | {bio} |
- stacks | 4 | {bio} |
tnseq-transit | 4 | {covid-19,bio} |
assemblytics | 3 | {bio} |
baitfisher | 3 | {bio} |
bandage | 3 | {bio} |
- bart-view | 3 | {imaging} |
beast2-mcmc | 3 | {bio} |
canu | 3 | {bio} |
clonalframeml | 3 | {covid-19,bio} |
dascrubber | 3 | {bio} |
+ dicompyler | 3 | {oncology} |
dindel | 3 | {bio} |
dwgsim | 3 | {bio} |
+ elastix | 3 | {imaging} |
estscan | 3 | {bio} |
fastml | 3 | {bio} |
fsm-lite | 3 | {bio} |
@@ -162,12 +162,14 @@ Last-Update: Sun, 03 May 2020 01:42:03 +0000
lamarc | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
libgff | 3 | {bio-dev} |
+ libsbml | 3 | {bio-dev} |
maffilter | 3 | {bio} |
metaphlan2 | 3 | {bio} |
mlv-smile | 3 | {bio,cloud} |
mptp | 3 | {bio} |
murasaki | 3 | {bio} |
openslide | 3 | {imaging-dev} |
+ orthanc-postgresql | 3 | {imaging} |
patman | 3 | {bio} |
pilon | 3 | {bio} |
pscan-chip | 3 | {bio} |
@@ -191,7 +193,6 @@ Last-Update: Sun, 03 May 2020 01:42:03 +0000
biosig4c++ | 2 | {physics,imaging-dev} |
ctn | 2 | {imaging-dev} |
cufflinks | 2 | {cloud,bio} |
- elastix | 2 | {imaging} |
elph | 2 | {bio} |
getdata | 2 | {bio} |
ghmm | 2 | {bio} |
@@ -200,7 +201,6 @@ Last-Update: Sun, 03 May 2020 01:42:03 +0000
logol | 2 | {bio} |
nanook | 2 | {bio} |
ngs-sdk | 2 | {bio-dev} |
- orthanc-postgresql | 2 | {imaging} |
pal2nal | 2 | {bio} |
phipack | 2 | {bio} |
python-scitrack | 2 | {covid-19} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7644fccdd9b4ef81febc6b6efef20f775d448331
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/7644fccdd9b4ef81febc6b6efef20f775d448331
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