[med-svn] [Git][med-team/spades][upstream] New upstream version 3.14.1+dfsg

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / spades


Commits:
a1d38af1 by Steffen Moeller at 2020-05-03T20:31:02+02:00
New upstream version 3.14.1+dfsg
- - - - -


30 changed files:

- README.md
- assembler/LICENSE
- assembler/VERSION
- assembler/changelog.html
- assembler/manual.html
- assembler/rnaspades_manual.html
- assembler/spades.py
- assembler/src/cmake/pack.cmake
- assembler/src/common/io/CMakeLists.txt
- + assembler/src/common/io/binary/genomic_info.cpp
- assembler/src/common/io/graph/gfa_writer.hpp
- assembler/src/common/modules/chromosome_remover.cpp
- assembler/src/common/modules/mismatch_shall_not_pass.hpp
- assembler/src/common/pipeline/CMakeLists.txt
- assembler/src/common/pipeline/config_struct.cpp
- assembler/src/common/pipeline/genomic_info.hpp
- assembler/src/common/stages/CMakeLists.txt
- assembler/src/common/pipeline/genomic_info_filler.cpp → assembler/src/common/stages/genomic_info_filler.cpp
- assembler/src/common/pipeline/genomic_info_filler.hpp → assembler/src/common/stages/genomic_info_filler.hpp
- assembler/src/common/utils/logger/logger.hpp
- assembler/src/projects/corrector/main.cpp
- assembler/src/projects/kmercount/read_filter.cpp
- assembler/src/projects/spades/CMakeLists.txt
- assembler/src/projects/spades/contig_output_stage.cpp
- assembler/src/projects/spades/contig_output_stage.hpp
- assembler/src/projects/spades/domain_graph.hpp
- assembler/src/projects/spades/main.cpp
- assembler/src/projects/spades/launch.hpp → assembler/src/projects/spades/pipeline.cpp
- assembler/src/projects/spades/second_phase_setup.cpp
- assembler/src/spades_pipeline/common/SeqIO.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/spades/-/commit/a1d38af11b125cb87502bfbeb6b5df9d057f6a27

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View it on GitLab: https://salsa.debian.org/med-team/spades/-/commit/a1d38af11b125cb87502bfbeb6b5df9d057f6a27
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