Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
1a6acbde by Andreas Tille at 2020-05-06T13:45:36+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,49 +1,47 @@
-Last-Update: Wed, 06 May 2020 01:42:03 +0000
+Last-Update: Wed, 06 May 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 173 | {covid-19,imaging} |
- orthanc | 89 | {practice,imaging,covid-19} |
- gdcm | 44 | {imaging-dev} |
- orthanc-wsi | 41 | {practice,covid-19,laboratory,imaging,oncology,his} |
- dicomscope | 33 | {imaging} |
+ dcmtk | 171 | {covid-19,imaging} |
+ orthanc | 88 | {practice,imaging,covid-19} |
+ gdcm | 46 | {imaging-dev} |
+ orthanc-wsi | 43 | {practice,covid-19,laboratory,imaging,oncology,his} |
dicom3tools | 32 | {imaging} |
+ dicomscope | 32 | {imaging} |
htsjdk | 32 | {bio-dev} |
gdcm | 25 | {imaging,covid-19} |
dcm2niix | 24 | {imaging} |
openslide | 19 | {imaging} |
+ pixelmed | 19 | {imaging} |
+ invesalius | 18 | {imaging} |
king | 18 | {imaging,typesetting} |
- pixelmed | 18 | {imaging} |
- gnumed-server | 17 | {practice,covid-19} |
- invesalius | 17 | {imaging} |
minc-tools | 17 | {imaging} |
- plastimatch | 16 | {imaging} |
- ngs-sdk | 15 | {bio-dev} |
+ gnumed-server | 16 | {practice,covid-19} |
+ plastimatch | 15 | {imaging} |
vtk-dicom | 15 | {imaging} |
biosig4c++ | 14 | {physics,imaging} |
- adun.app | 12 | {bio} |
- gdcm | 12 | {imaging-dev} |
- hunspell-en-med | 12 | {tools} |
+ ngs-sdk | 14 | {bio-dev} |
+ gdcm | 13 | {imaging-dev} |
+ adun.app | 11 | {bio} |
insighttoolkit4 | 11 | {imaging-dev} |
+ ngs-sdk | 11 | {bio-dev} |
obitools | 11 | {bio} |
jebl2 | 10 | {bio-dev} |
biojava-live | 9 | {bio-dev} |
gasic | 9 | {bio,cloud} |
- ngs-sdk | 9 | {bio-dev} |
parsnp | 9 | {bio} |
ncbi-entrez-direct | 8 | {bio} |
tree-puzzle | 8 | {bio-phylogeny,cloud,bio} |
- cgview | 7 | {bio} |
- ea-utils | 7 | {bio} |
fitgcp | 7 | {bio,cloud} |
- librg-utils-perl | 7 | {bio} |
mipe | 7 | {cloud,bio} |
+ pymia | 7 | {imaging-dev} |
alter-sequence-alignment | 6 | {bio} |
+ cgview | 6 | {bio} |
+ ea-utils | 6 | {bio} |
fastlink | 6 | {bio,cloud} |
+ librg-utils-perl | 6 | {bio} |
melting | 6 | {bio,cloud} |
orthanc-webviewer | 6 | {imaging} |
- psychopy | 6 | {psychology} |
- pymia | 6 | {imaging-dev} |
rambo-k | 6 | {bio} |
ampliconnoise | 5 | {cloud,bio} |
arden | 5 | {bio,cloud} |
@@ -52,18 +50,16 @@ Last-Update: Wed, 06 May 2020 01:42:03 +0000
dazzdb | 5 | {bio} |
indelible | 5 | {bio} |
jaligner | 5 | {bio} |
- king-probe | 5 | {bio} |
libminc | 5 | {imaging-dev} |
libsbml | 5 | {bio-dev} |
maqview | 5 | {bio} |
mhap | 5 | {bio-ngs,bio} |
- mrs | 5 | {bio} |
ncbi-seg | 5 | {bio} |
norsp | 5 | {bio} |
orthanc-dicomweb | 5 | {covid-19,imaging} |
orthanc-mysql | 5 | {imaging} |
piler | 5 | {bio} |
- pscan-tfbs | 5 | {bio} |
+ psychopy | 5 | {psychology} |
radiant | 5 | {bio} |
salmon | 5 | {bio} |
seer | 5 | {bio} |
@@ -71,7 +67,6 @@ Last-Update: Wed, 06 May 2020 01:42:03 +0000
sigma-align | 5 | {bio-phylogeny,cloud,bio} |
spread-phy | 5 | {bio,bio-phylogeny} |
stacks | 5 | {bio} |
- staden | 5 | {bio} |
zalign | 5 | {cloud,bio} |
anfo | 4 | {cloud,bio} |
beast-mcmc | 4 | {bio,bio-phylogeny} |
@@ -88,8 +83,11 @@ Last-Update: Wed, 06 May 2020 01:42:03 +0000
embassy-domsearch | 4 | {cloud,bio} |
freecontact | 4 | {bio,cloud} |
jellyfish1 | 4 | {bio} |
+ king-probe | 4 | {bio} |
+ libncl | 4 | {bio} |
mapsembler2 | 4 | {cloud,bio} |
microbegps | 4 | {bio} |
+ mrs | 4 | {bio} |
neobio | 4 | {bio,cloud} |
nutsqlite | 4 | {tools} |
paraclu | 4 | {cloud,bio} |
@@ -100,12 +98,14 @@ Last-Update: Wed, 06 May 2020 01:42:03 +0000
predictprotein | 4 | {bio} |
prime-phylo | 4 | {bio,cloud} |
probabel | 4 | {cloud,bio} |
+ pscan-tfbs | 4 | {bio} |
rdp-alignment | 4 | {bio} |
rdp-readseq | 4 | {bio} |
saint | 4 | {bio} |
scythe | 4 | {bio} |
sickle | 4 | {bio} |
squizz | 4 | {bio,cloud} |
+ staden | 4 | {bio} |
transrate-tools | 4 | {bio} |
transtermhp | 4 | {bio} |
treeview | 4 | {bio-phylogeny,bio} |
@@ -124,10 +124,8 @@ Last-Update: Wed, 06 May 2020 01:42:03 +0000
harvest-tools | 3 | {bio} |
ipig | 3 | {bio} |
jmodeltest | 3 | {bio,bio-phylogeny} |
- lagan | 3 | {bio} |
libdivsufsort | 3 | {bio-dev} |
libgff | 3 | {bio-dev} |
- libncl | 3 | {bio} |
libpal-java | 3 | {bio-dev} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsmithwaterman | 3 | {bio} |
@@ -149,7 +147,6 @@ Last-Update: Wed, 06 May 2020 01:42:03 +0000
soapaligner | 3 | {bio} |
soapsnp | 3 | {bio} |
srf | 3 | {bio-dev} |
- tnseq-transit | 3 | {covid-19,bio} |
assemblytics | 2 | {bio} |
baitfisher | 2 | {bio} |
bandage | 2 | {bio} |
@@ -158,6 +155,7 @@ Last-Update: Wed, 06 May 2020 01:42:03 +0000
canu | 2 | {bio} |
clonalframeml | 2 | {covid-19,bio} |
ctn | 2 | {imaging-dev} |
+ cufflinks | 2 | {cloud,bio} |
dascrubber | 2 | {bio} |
dindel | 2 | {bio} |
dwgsim | 2 | {bio} |
@@ -167,6 +165,7 @@ Last-Update: Wed, 06 May 2020 01:42:03 +0000
getdata | 2 | {bio} |
kma | 2 | {bio} |
kmerresistance | 2 | {bio} |
+ lagan | 2 | {bio} |
lamarc | 2 | {bio} |
libctapimkt | 2 | {practice} |
libvistaio | 2 | {imaging-dev} |
@@ -179,6 +178,7 @@ Last-Update: Wed, 06 May 2020 01:42:03 +0000
murasaki | 2 | {bio} |
nanook | 2 | {bio} |
ngs-sdk | 2 | {bio-dev} |
+ openslide | 2 | {imaging-dev} |
patman | 2 | {bio} |
phipack | 2 | {bio} |
pilon | 2 | {bio} |
@@ -196,6 +196,7 @@ Last-Update: Wed, 06 May 2020 01:42:03 +0000
sprai | 2 | {bio} |
suitename | 2 | {bio} |
surankco | 2 | {bio} |
+ tnseq-transit | 2 | {covid-19,bio} |
tracetuner | 2 | {bio} |
velvetoptimiser | 2 | {bio} |
vsearch | 2 | {bio} |
@@ -204,7 +205,6 @@ Last-Update: Wed, 06 May 2020 01:42:03 +0000
biobambam2 | 1 | {covid-19,bio-dev,bio} |
blasr | 1 | {bio-ngs,bio} |
blimps | 1 | {bio} |
- cufflinks | 1 | {cloud,bio} |
elph | 1 | {bio} |
embassy-phylip | 1 | {cloud,bio} |
emboss-explorer | 1 | {bio} |
@@ -215,7 +215,6 @@ Last-Update: Wed, 06 May 2020 01:42:03 +0000
libmialm | 1 | {imaging-dev} |
libsmithwaterman | 1 | {bio-dev} |
libxdf | 1 | {imaging-dev} |
- openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
oscar | 1 | {data,tools,practice} |
pal2nal | 1 | {bio} |
@@ -291,8 +290,8 @@ Last-Update: Wed, 06 May 2020 01:42:03 +0000
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
pycoqc | 0 | {covid-19,bio} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
@@ -304,5 +303,5 @@ Last-Update: Wed, 06 May 2020 01:42:03 +0000
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
bustools | -1 | {bio} |
-(331 rows)
+(330 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/1a6acbdefd573f7d0f5d65c1e7bd61f0457cd547
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/1a6acbdefd573f7d0f5d65c1e7bd61f0457cd547
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