[med-svn] [Git][med-team/toil][master] 6 commits: routine-update: New upstream version

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / toil


Commits:
0d627fb3 by Michael R. Crusoe at 2020-05-07T15:00:22+02:00
routine-update: New upstream version

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cb23bada by Michael R. Crusoe at 2020-05-07T15:00:23+02:00
New upstream version 4.1.0
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bae1000a by Michael R. Crusoe at 2020-05-07T15:00:31+02:00
Update upstream source from tag 'upstream/4.1.0'

Update to upstream version '4.1.0'
with Debian dir 1b021a2b3f85aba6b2dd134e3642d1b6de014f4b
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6bf3f0f1 by Michael R. Crusoe at 2020-05-07T15:12:21+02:00
Refreshed the patches

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7e1ec381 by Michael R. Crusoe at 2020-05-07T15:16:17+02:00
python3-idna is recommended for kubernetes users

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98613b6a by Michael R. Crusoe at 2020-05-07T15:19:16+02:00
TODO: python3-enlighten

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30 changed files:

- .gitlab-ci.yml
- Makefile
- README.rst
- debian/changelog
- debian/control
- debian/patches/no_galaxy_lib
- debian/patches/remove-pathlib2-dep
- debian/patches/setting_version.patch
- debian/patches/soften-mesos-deps
- debian/patches/version.patch
- docker/Dockerfile.py
- docs/appendices/environment_vars.rst
- docs/running/cliOptions.rst
- setup.py
- src/toil/__init__.py
- src/toil/batchSystems/__init__.py
- src/toil/batchSystems/abstractBatchSystem.py
- src/toil/batchSystems/abstractGridEngineBatchSystem.py
- src/toil/batchSystems/gridengine.py
- src/toil/batchSystems/kubernetes.py
- src/toil/batchSystems/lsf.py
- src/toil/batchSystems/mesos/batchSystem.py
- src/toil/batchSystems/options.py
- src/toil/batchSystems/singleMachine.py
- src/toil/batchSystems/slurm.py
- src/toil/batchSystems/torque.py
- src/toil/common.py
- src/toil/cwl/cwltoil.py
- src/toil/jobStores/aws/jobStore.py
- src/toil/jobStores/fileJobStore.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/66f0454bcb6c57fcd1397887d1a78532d009a289...98613b6a1e9984fe3691149962b1cdf65b073b24

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View it on GitLab: https://salsa.debian.org/med-team/toil/-/compare/66f0454bcb6c57fcd1397887d1a78532d009a289...98613b6a1e9984fe3691149962b1cdf65b073b24
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