Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
d252a252 by Andreas Tille at 2020-05-07T13:45:10+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,48 +1,49 @@
-Last-Update: Thu, 07 May 2020 01:42:04 +0000
+Last-Update: Thu, 07 May 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 171 | {covid-19,imaging} |
- orthanc | 88 | {practice,imaging,covid-19} |
- gdcm | 46 | {imaging-dev} |
- orthanc-wsi | 43 | {practice,covid-19,laboratory,imaging,oncology,his} |
+ dcmtk | 175 | {covid-19,imaging} |
+ orthanc | 90 | {practice,imaging,covid-19} |
+ gdcm | 47 | {imaging-dev} |
+ orthanc-wsi | 45 | {practice,covid-19,laboratory,imaging,oncology,his} |
dicom3tools | 32 | {imaging} |
- dicomscope | 32 | {imaging} |
htsjdk | 32 | {bio-dev} |
+ dicomscope | 31 | {imaging} |
+ dcm2niix | 25 | {imaging} |
gdcm | 25 | {imaging,covid-19} |
- dcm2niix | 24 | {imaging} |
openslide | 19 | {imaging} |
pixelmed | 19 | {imaging} |
invesalius | 18 | {imaging} |
king | 18 | {imaging,typesetting} |
- minc-tools | 17 | {imaging} |
+ minc-tools | 18 | {imaging} |
gnumed-server | 16 | {practice,covid-19} |
- plastimatch | 15 | {imaging} |
- vtk-dicom | 15 | {imaging} |
- biosig4c++ | 14 | {physics,imaging} |
- ngs-sdk | 14 | {bio-dev} |
+ plastimatch | 16 | {imaging} |
+ vtk-dicom | 14 | {imaging} |
+ biosig4c++ | 13 | {physics,imaging} |
gdcm | 13 | {imaging-dev} |
+ ngs-sdk | 13 | {bio-dev} |
+ insighttoolkit4 | 12 | {imaging-dev} |
adun.app | 11 | {bio} |
- insighttoolkit4 | 11 | {imaging-dev} |
ngs-sdk | 11 | {bio-dev} |
- obitools | 11 | {bio} |
+ gasic | 10 | {bio,cloud} |
jebl2 | 10 | {bio-dev} |
+ obitools | 10 | {bio} |
+ parsnp | 10 | {bio} |
biojava-live | 9 | {bio-dev} |
- gasic | 9 | {bio,cloud} |
- parsnp | 9 | {bio} |
+ fitgcp | 8 | {bio,cloud} |
ncbi-entrez-direct | 8 | {bio} |
tree-puzzle | 8 | {bio-phylogeny,cloud,bio} |
- fitgcp | 7 | {bio,cloud} |
+ librg-utils-perl | 7 | {bio} |
mipe | 7 | {cloud,bio} |
pymia | 7 | {imaging-dev} |
+ rambo-k | 7 | {bio} |
alter-sequence-alignment | 6 | {bio} |
cgview | 6 | {bio} |
ea-utils | 6 | {bio} |
fastlink | 6 | {bio,cloud} |
- librg-utils-perl | 6 | {bio} |
melting | 6 | {bio,cloud} |
orthanc-webviewer | 6 | {imaging} |
- rambo-k | 6 | {bio} |
+ salmon | 6 | {bio} |
ampliconnoise | 5 | {cloud,bio} |
arden | 5 | {bio,cloud} |
bart-view | 5 | {imaging} |
@@ -60,8 +61,6 @@ Last-Update: Thu, 07 May 2020 01:42:04 +0000
orthanc-mysql | 5 | {imaging} |
piler | 5 | {bio} |
psychopy | 5 | {psychology} |
- radiant | 5 | {bio} |
- salmon | 5 | {bio} |
seer | 5 | {bio} |
sibsim4 | 5 | {bio,cloud} |
sigma-align | 5 | {bio-phylogeny,cloud,bio} |
@@ -84,6 +83,8 @@ Last-Update: Thu, 07 May 2020 01:42:04 +0000
freecontact | 4 | {bio,cloud} |
jellyfish1 | 4 | {bio} |
king-probe | 4 | {bio} |
+ libdivsufsort | 4 | {bio-dev} |
+ libgff | 4 | {bio-dev} |
libncl | 4 | {bio} |
mapsembler2 | 4 | {cloud,bio} |
microbegps | 4 | {bio} |
@@ -99,6 +100,7 @@ Last-Update: Thu, 07 May 2020 01:42:04 +0000
prime-phylo | 4 | {bio,cloud} |
probabel | 4 | {cloud,bio} |
pscan-tfbs | 4 | {bio} |
+ radiant | 4 | {bio} |
rdp-alignment | 4 | {bio} |
rdp-readseq | 4 | {bio} |
saint | 4 | {bio} |
@@ -124,8 +126,7 @@ Last-Update: Thu, 07 May 2020 01:42:04 +0000
harvest-tools | 3 | {bio} |
ipig | 3 | {bio} |
jmodeltest | 3 | {bio,bio-phylogeny} |
- libdivsufsort | 3 | {bio-dev} |
- libgff | 3 | {bio-dev} |
+ kma | 3 | {bio} |
libpal-java | 3 | {bio-dev} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsmithwaterman | 3 | {bio} |
@@ -134,14 +135,12 @@ Last-Update: Thu, 07 May 2020 01:42:04 +0000
paml | 3 | {bio} |
perm | 3 | {cloud,bio} |
placnet | 3 | {bio} |
- proalign | 3 | {bio,bio-phylogeny} |
prottest | 3 | {bio-phylogeny,bio} |
qrisk2 | 3 | {practice} |
rdp-classifier | 3 | {bio} |
relion | 3 | {bio} |
repeatmasker-recon | 3 | {bio} |
roguenarok | 3 | {bio} |
- seqsero | 3 | {bio} |
seqtools | 3 | {bio} |
sga | 3 | {bio} |
soapaligner | 3 | {bio} |
@@ -154,7 +153,6 @@ Last-Update: Thu, 07 May 2020 01:42:04 +0000
biosig4c++ | 2 | {physics,imaging-dev} |
canu | 2 | {bio} |
clonalframeml | 2 | {covid-19,bio} |
- ctn | 2 | {imaging-dev} |
cufflinks | 2 | {cloud,bio} |
dascrubber | 2 | {bio} |
dindel | 2 | {bio} |
@@ -163,7 +161,6 @@ Last-Update: Thu, 07 May 2020 01:42:04 +0000
fastml | 2 | {bio} |
fsm-lite | 2 | {bio} |
getdata | 2 | {bio} |
- kma | 2 | {bio} |
kmerresistance | 2 | {bio} |
lagan | 2 | {bio} |
lamarc | 2 | {bio} |
@@ -177,20 +174,22 @@ Last-Update: Thu, 07 May 2020 01:42:04 +0000
mptp | 2 | {bio} |
murasaki | 2 | {bio} |
nanook | 2 | {bio} |
- ngs-sdk | 2 | {bio-dev} |
openslide | 2 | {imaging-dev} |
patman | 2 | {bio} |
phipack | 2 | {bio} |
pilon | 2 | {bio} |
+ proalign | 2 | {bio,bio-phylogeny} |
pscan-chip | 2 | {bio} |
python-scitrack | 2 | {covid-19} |
qcumber | 2 | {bio} |
quorum | 2 | {bio} |
rtax | 2 | {cloud,bio} |
runcircos-gui | 2 | {bio} |
+ samtools-legacy | 2 | {bio-dev} |
scrm | 2 | {bio} |
segemehl | 2 | {bio} |
seqmagick | 2 | {bio,covid-19} |
+ seqsero | 2 | {bio} |
snap-aligner | 2 | {bio} |
spaced | 2 | {bio} |
sprai | 2 | {bio} |
@@ -205,26 +204,30 @@ Last-Update: Thu, 07 May 2020 01:42:04 +0000
biobambam2 | 1 | {covid-19,bio-dev,bio} |
blasr | 1 | {bio-ngs,bio} |
blimps | 1 | {bio} |
+ ctn | 1 | {imaging-dev} |
elph | 1 | {bio} |
embassy-phylip | 1 | {cloud,bio} |
emboss-explorer | 1 | {bio} |
+ gatb-core | 1 | {bio-dev} |
ghmm | 1 | {bio} |
hinge | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
+ libmaus2 | 1 | {covid-19,bio-dev} |
libmialm | 1 | {imaging-dev} |
libsmithwaterman | 1 | {bio-dev} |
libxdf | 1 | {imaging-dev} |
+ multiqc | 1 | {bio,covid-19} |
+ ncbi-vdb | 1 | {bio-dev} |
+ ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
oscar | 1 | {data,tools,practice} |
pal2nal | 1 | {bio} |
papyrus | 1 | {imaging-dev} |
plasmidseeker | 1 | {bio} |
- python-py2bit | 1 | {bio,bio-dev} |
rampler | 1 | {bio} |
relion | 1 | {bio} |
samblaster | 1 | {covid-19,bio} |
- samtools-legacy | 1 | {bio-dev} |
seqan | 1 | {bio-dev} |
sift | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
@@ -248,7 +251,6 @@ Last-Update: Thu, 07 May 2020 01:42:04 +0000
emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
freecontact | 0 | {bio-dev} |
- gatb-core | 0 | {bio-dev} |
htscodecs | 0 | {covid-19,bio-dev} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -266,7 +268,6 @@ Last-Update: Thu, 07 May 2020 01:42:04 +0000
libhmsbeagle | 0 | {bio-dev} |
libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
- libmaus2 | 0 | {covid-19,bio-dev} |
libmems | 0 | {bio-dev} |
libmuscle | 0 | {bio-dev} |
libncl | 0 | {bio-dev} |
@@ -280,9 +281,7 @@ Last-Update: Thu, 07 May 2020 01:42:04 +0000
miaviewit | 0 | {imaging-dev} |
milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
- multiqc | 0 | {bio,covid-19} |
murasaki | 0 | {bio} |
- ncbi-vdb | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
@@ -290,6 +289,7 @@ Last-Update: Thu, 07 May 2020 01:42:04 +0000
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
pycoqc | 0 | {covid-19,bio} |
+ python-py2bit | 0 | {bio,bio-dev} |
relion | 0 | {bio} |
relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d252a2525047a2424246195dc0436b223db5a928
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