Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
5921d9f9 by Andreas Tille at 2020-05-08T13:45:14+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,98 +1,113 @@
-Last-Update: Fri, 08 May 2020 01:42:03 +0000
+Last-Update: Fri, 08 May 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 175 | {covid-19,imaging} |
- orthanc | 90 | {practice,imaging,covid-19} |
- gdcm | 47 | {imaging-dev} |
- orthanc-wsi | 45 | {practice,covid-19,laboratory,imaging,oncology,his} |
+ dcmtk | 182 | {covid-19,imaging} |
+ orthanc | 92 | {practice,imaging,covid-19} |
+ gdcm | 49 | {imaging-dev} |
+ orthanc-wsi | 47 | {practice,covid-19,laboratory,imaging,oncology,his} |
+ dicomscope | 34 | {imaging} |
+ htsjdk | 34 | {bio-dev} |
dicom3tools | 32 | {imaging} |
- htsjdk | 32 | {bio-dev} |
- dicomscope | 31 | {imaging} |
- dcm2niix | 25 | {imaging} |
- gdcm | 25 | {imaging,covid-19} |
- openslide | 19 | {imaging} |
+ dcm2niix | 26 | {imaging} |
+ gdcm | 26 | {imaging,covid-19} |
pixelmed | 19 | {imaging} |
invesalius | 18 | {imaging} |
- king | 18 | {imaging,typesetting} |
minc-tools | 18 | {imaging} |
+ openslide | 18 | {imaging} |
gnumed-server | 16 | {practice,covid-19} |
+ king | 16 | {imaging,typesetting} |
plastimatch | 16 | {imaging} |
+ ngs-sdk | 14 | {bio-dev} |
vtk-dicom | 14 | {imaging} |
biosig4c++ | 13 | {physics,imaging} |
gdcm | 13 | {imaging-dev} |
- ngs-sdk | 13 | {bio-dev} |
+ adun.app | 12 | {bio} |
insighttoolkit4 | 12 | {imaging-dev} |
- adun.app | 11 | {bio} |
- ngs-sdk | 11 | {bio-dev} |
+ jebl2 | 11 | {bio-dev} |
+ obitools | 11 | {bio} |
+ biojava-live | 10 | {bio-dev} |
gasic | 10 | {bio,cloud} |
- jebl2 | 10 | {bio-dev} |
- obitools | 10 | {bio} |
parsnp | 10 | {bio} |
- biojava-live | 9 | {bio-dev} |
+ ngs-sdk | 9 | {bio-dev} |
fitgcp | 8 | {bio,cloud} |
- ncbi-entrez-direct | 8 | {bio} |
tree-puzzle | 8 | {bio-phylogeny,cloud,bio} |
+ cgview | 7 | {bio} |
+ ea-utils | 7 | {bio} |
+ fastlink | 7 | {bio,cloud} |
librg-utils-perl | 7 | {bio} |
mipe | 7 | {cloud,bio} |
- pymia | 7 | {imaging-dev} |
+ orthanc-webviewer | 7 | {imaging} |
rambo-k | 7 | {bio} |
alter-sequence-alignment | 6 | {bio} |
- cgview | 6 | {bio} |
- ea-utils | 6 | {bio} |
- fastlink | 6 | {bio,cloud} |
+ ampliconnoise | 6 | {cloud,bio} |
+ arden | 6 | {bio,cloud} |
+ dazzdb | 6 | {bio} |
+ indelible | 6 | {bio} |
+ jaligner | 6 | {bio} |
+ libsbml | 6 | {bio-dev} |
+ maqview | 6 | {bio} |
melting | 6 | {bio,cloud} |
- orthanc-webviewer | 6 | {imaging} |
+ orthanc-dicomweb | 6 | {covid-19,imaging} |
+ orthanc-mysql | 6 | {imaging} |
+ piler | 6 | {bio} |
+ pymia | 6 | {imaging-dev} |
salmon | 6 | {bio} |
- ampliconnoise | 5 | {cloud,bio} |
- arden | 5 | {bio,cloud} |
+ seer | 6 | {bio} |
+ anfo | 5 | {cloud,bio} |
bart-view | 5 | {imaging} |
+ beast-mcmc | 5 | {bio,bio-phylogeny} |
+ biomaj3-cli | 5 | {cloud} |
+ bio-rainbow | 5 | {bio} |
+ bio-tradis | 5 | {bio-dev,bio} |
+ bppsuite | 5 | {bio} |
+ brig | 5 | {bio} |
cluster3 | 5 | {bio} |
- dazzdb | 5 | {bio} |
- indelible | 5 | {bio} |
- jaligner | 5 | {bio} |
+ codonw | 5 | {bio} |
+ edtsurf | 5 | {bio} |
+ embassy-domainatrix | 5 | {cloud,bio} |
+ embassy-domalign | 5 | {cloud,bio} |
+ freecontact | 5 | {bio,cloud} |
+ jellyfish1 | 5 | {bio} |
+ libgff | 5 | {bio-dev} |
libminc | 5 | {imaging-dev} |
- libsbml | 5 | {bio-dev} |
- maqview | 5 | {bio} |
+ libncl | 5 | {bio} |
mhap | 5 | {bio-ngs,bio} |
ncbi-seg | 5 | {bio} |
norsp | 5 | {bio} |
- orthanc-dicomweb | 5 | {covid-19,imaging} |
- orthanc-mysql | 5 | {imaging} |
- piler | 5 | {bio} |
+ phast | 5 | {bio} |
psychopy | 5 | {psychology} |
- seer | 5 | {bio} |
sibsim4 | 5 | {bio,cloud} |
sigma-align | 5 | {bio-phylogeny,cloud,bio} |
spread-phy | 5 | {bio,bio-phylogeny} |
stacks | 5 | {bio} |
+ staden | 5 | {bio} |
+ transrate-tools | 5 | {bio} |
+ transtermhp | 5 | {bio} |
zalign | 5 | {cloud,bio} |
- anfo | 4 | {cloud,bio} |
- beast-mcmc | 4 | {bio,bio-phylogeny} |
- biomaj3-cli | 4 | {cloud} |
- bio-rainbow | 4 | {bio} |
- bio-tradis | 4 | {bio-dev,bio} |
- bppsuite | 4 | {bio} |
- brig | 4 | {bio} |
- codonw | 4 | {bio} |
+ abacas | 4 | {bio,covid-19} |
+ biomaj3-daemon | 4 | {bio} |
+ bitseq | 4 | {bio} |
+ clonalorigin | 4 | {bio} |
+ daligner | 4 | {bio,bio-ngs} |
ecopcr | 4 | {bio} |
- edtsurf | 4 | {bio} |
- embassy-domainatrix | 4 | {cloud,bio} |
- embassy-domalign | 4 | {cloud,bio} |
embassy-domsearch | 4 | {cloud,bio} |
- freecontact | 4 | {bio,cloud} |
- jellyfish1 | 4 | {bio} |
+ freebayes | 4 | {bio} |
+ gatb-core | 4 | {bio} |
+ harvest-tools | 4 | {bio} |
+ ipig | 4 | {bio} |
+ jmodeltest | 4 | {bio,bio-phylogeny} |
king-probe | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
- libgff | 4 | {bio-dev} |
- libncl | 4 | {bio} |
+ libpal-java | 4 | {bio-dev} |
mapsembler2 | 4 | {cloud,bio} |
microbegps | 4 | {bio} |
mrs | 4 | {bio} |
neobio | 4 | {bio,cloud} |
nutsqlite | 4 | {tools} |
+ orthanc-postgresql | 4 | {imaging} |
+ paml | 4 | {bio} |
paraclu | 4 | {cloud,bio} |
- phast | 4 | {bio} |
phybin | 4 | {bio} |
phyutility | 4 | {cloud,bio} |
poretools | 4 | {bio} |
@@ -103,66 +118,60 @@ Last-Update: Fri, 08 May 2020 01:42:03 +0000
radiant | 4 | {bio} |
rdp-alignment | 4 | {bio} |
rdp-readseq | 4 | {bio} |
+ repeatmasker-recon | 4 | {bio} |
saint | 4 | {bio} |
scythe | 4 | {bio} |
+ seqtools | 4 | {bio} |
sickle | 4 | {bio} |
squizz | 4 | {bio,cloud} |
- staden | 4 | {bio} |
- transrate-tools | 4 | {bio} |
- transtermhp | 4 | {bio} |
+ srf | 4 | {bio-dev} |
treeview | 4 | {bio-phylogeny,bio} |
- abacas | 3 | {bio,covid-19} |
+ assemblytics | 3 | {bio} |
+ baitfisher | 3 | {bio} |
+ bandage | 3 | {bio} |
beads | 3 | {bio} |
- biomaj3-daemon | 3 | {bio} |
- bitseq | 3 | {bio} |
+ beast2-mcmc | 3 | {bio} |
+ canu | 3 | {bio} |
centrifuge | 3 | {bio} |
- clonalorigin | 3 | {bio} |
- daligner | 3 | {bio,bio-ngs} |
+ clonalframeml | 3 | {covid-19,bio} |
+ cufflinks | 3 | {cloud,bio} |
+ dascrubber | 3 | {bio} |
delly | 3 | {bio,covid-19} |
dicompyler | 3 | {oncology} |
+ dindel | 3 | {bio} |
elastix | 3 | {imaging} |
- freebayes | 3 | {bio} |
- gatb-core | 3 | {bio} |
- harvest-tools | 3 | {bio} |
- ipig | 3 | {bio} |
- jmodeltest | 3 | {bio,bio-phylogeny} |
+ estscan | 3 | {bio} |
+ fastml | 3 | {bio} |
+ fsm-lite | 3 | {bio} |
kma | 3 | {bio} |
- libpal-java | 3 | {bio-dev} |
+ lagan | 3 | {bio} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsmithwaterman | 3 | {bio} |
mauve-aligner | 3 | {bio} |
- orthanc-postgresql | 3 | {imaging} |
- paml | 3 | {bio} |
+ murasaki | 3 | {bio} |
perm | 3 | {cloud,bio} |
placnet | 3 | {bio} |
prottest | 3 | {bio-phylogeny,bio} |
+ pscan-chip | 3 | {bio} |
qrisk2 | 3 | {practice} |
rdp-classifier | 3 | {bio} |
relion | 3 | {bio} |
- repeatmasker-recon | 3 | {bio} |
roguenarok | 3 | {bio} |
+ segemehl | 3 | {bio} |
seqtools | 3 | {bio} |
sga | 3 | {bio} |
soapaligner | 3 | {bio} |
soapsnp | 3 | {bio} |
- srf | 3 | {bio-dev} |
- assemblytics | 2 | {bio} |
- baitfisher | 2 | {bio} |
- bandage | 2 | {bio} |
- beast2-mcmc | 2 | {bio} |
+ sprai | 3 | {bio} |
+ atropos | 2 | {bio} |
biosig4c++ | 2 | {physics,imaging-dev} |
- canu | 2 | {bio} |
- clonalframeml | 2 | {covid-19,bio} |
- cufflinks | 2 | {cloud,bio} |
- dascrubber | 2 | {bio} |
- dindel | 2 | {bio} |
+ blasr | 2 | {bio-ngs,bio} |
dwgsim | 2 | {bio} |
- estscan | 2 | {bio} |
- fastml | 2 | {bio} |
- fsm-lite | 2 | {bio} |
+ elph | 2 | {bio} |
getdata | 2 | {bio} |
+ ghmm | 2 | {bio} |
+ hinge | 2 | {bio} |
kmerresistance | 2 | {bio} |
- lagan | 2 | {bio} |
lamarc | 2 | {bio} |
libctapimkt | 2 | {practice} |
libvistaio | 2 | {imaging-dev} |
@@ -172,14 +181,12 @@ Last-Update: Fri, 08 May 2020 01:42:03 +0000
metaphlan2 | 2 | {bio} |
mlv-smile | 2 | {bio,cloud} |
mptp | 2 | {bio} |
- murasaki | 2 | {bio} |
nanook | 2 | {bio} |
openslide | 2 | {imaging-dev} |
patman | 2 | {bio} |
phipack | 2 | {bio} |
pilon | 2 | {bio} |
proalign | 2 | {bio,bio-phylogeny} |
- pscan-chip | 2 | {bio} |
python-scitrack | 2 | {covid-19} |
qcumber | 2 | {bio} |
quorum | 2 | {bio} |
@@ -187,12 +194,10 @@ Last-Update: Fri, 08 May 2020 01:42:03 +0000
runcircos-gui | 2 | {bio} |
samtools-legacy | 2 | {bio-dev} |
scrm | 2 | {bio} |
- segemehl | 2 | {bio} |
seqmagick | 2 | {bio,covid-19} |
seqsero | 2 | {bio} |
snap-aligner | 2 | {bio} |
spaced | 2 | {bio} |
- sprai | 2 | {bio} |
suitename | 2 | {bio} |
surankco | 2 | {bio} |
tnseq-transit | 2 | {covid-19,bio} |
@@ -200,17 +205,13 @@ Last-Update: Fri, 08 May 2020 01:42:03 +0000
velvetoptimiser | 2 | {bio} |
vsearch | 2 | {bio} |
yaha | 2 | {bio} |
- atropos | 1 | {bio} |
biobambam2 | 1 | {covid-19,bio-dev,bio} |
- blasr | 1 | {bio-ngs,bio} |
blimps | 1 | {bio} |
ctn | 1 | {imaging-dev} |
- elph | 1 | {bio} |
embassy-phylip | 1 | {cloud,bio} |
emboss-explorer | 1 | {bio} |
+ emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
- ghmm | 1 | {bio} |
- hinge | 1 | {bio} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
libmaus2 | 1 | {covid-19,bio-dev} |
@@ -224,6 +225,7 @@ Last-Update: Fri, 08 May 2020 01:42:03 +0000
oscar | 1 | {data,tools,practice} |
pal2nal | 1 | {bio} |
papyrus | 1 | {imaging-dev} |
+ pbdagcon | 1 | {bio} |
plasmidseeker | 1 | {bio} |
rampler | 1 | {bio} |
relion | 1 | {bio} |
@@ -248,7 +250,6 @@ Last-Update: Fri, 08 May 2020 01:42:03 +0000
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
- emmax | 0 | {bio} |
fis-gtm | 0 | {his} |
freecontact | 0 | {bio-dev} |
htscodecs | 0 | {covid-19,bio-dev} |
@@ -285,7 +286,6 @@ Last-Update: Fri, 08 May 2020 01:42:03 +0000
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
- pbdagcon | 0 | {bio} |
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
pycoqc | 0 | {covid-19,bio} |
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5921d9f91c372fb6f9b782632f822c0f234d7ac9
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5921d9f91c372fb6f9b782632f822c0f234d7ac9
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