Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
d2fc6bf0 by Andreas Tille at 2020-05-10T13:45:10+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,59 +1,55 @@
-Last-Update: Sun, 10 May 2020 01:42:04 +0000
+Last-Update: Sun, 10 May 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 184 | {covid-19,imaging} |
- orthanc | 93 | {practice,imaging,covid-19} |
- gdcm | 52 | {imaging-dev} |
+ dcmtk | 187 | {covid-19,imaging} |
+ orthanc | 94 | {practice,imaging,covid-19} |
+ gdcm | 53 | {imaging-dev} |
orthanc-wsi | 48 | {practice,covid-19,laboratory,imaging,oncology,his} |
- dicomscope | 34 | {imaging} |
- htsjdk | 34 | {bio-dev} |
- dicom3tools | 33 | {imaging} |
- gdcm | 26 | {imaging,covid-19} |
- dcm2niix | 24 | {imaging} |
+ dicom3tools | 35 | {imaging} |
+ dicomscope | 33 | {imaging} |
+ htsjdk | 33 | {bio-dev} |
+ gdcm | 27 | {imaging,covid-19} |
+ dcm2niix | 23 | {imaging} |
pixelmed | 20 | {imaging} |
minc-tools | 18 | {imaging} |
openslide | 18 | {imaging} |
invesalius | 17 | {imaging} |
- gnumed-server | 16 | {practice,covid-19} |
+ plastimatch | 17 | {imaging} |
king | 16 | {imaging,typesetting} |
- plastimatch | 16 | {imaging} |
+ gnumed-server | 15 | {practice,covid-19} |
ngs-sdk | 14 | {bio-dev} |
vtk-dicom | 14 | {imaging} |
biosig4c++ | 13 | {physics,imaging} |
+ insighttoolkit4 | 13 | {imaging-dev} |
adun.app | 12 | {bio} |
gdcm | 12 | {imaging-dev} |
- insighttoolkit4 | 12 | {imaging-dev} |
jebl2 | 11 | {bio-dev} |
obitools | 11 | {bio} |
biojava-live | 10 | {bio-dev} |
- gasic | 9 | {bio,cloud} |
- ngs-sdk | 9 | {bio-dev} |
- parsnp | 9 | {bio} |
- tree-puzzle | 9 | {bio-phylogeny,cloud,bio} |
+ ngs-sdk | 8 | {bio-dev} |
+ orthanc-webviewer | 8 | {imaging} |
+ tree-puzzle | 8 | {bio-phylogeny,cloud,bio} |
cgview | 7 | {bio} |
ea-utils | 7 | {bio} |
fastlink | 7 | {bio,cloud} |
- fitgcp | 7 | {bio,cloud} |
+ gasic | 7 | {bio,cloud} |
librg-utils-perl | 7 | {bio} |
mipe | 7 | {cloud,bio} |
- orthanc-webviewer | 7 | {imaging} |
- rambo-k | 7 | {bio} |
+ orthanc-dicomweb | 7 | {covid-19,imaging} |
+ orthanc-mysql | 7 | {imaging} |
+ salmon | 7 | {bio} |
alter-sequence-alignment | 6 | {bio} |
ampliconnoise | 6 | {cloud,bio} |
arden | 6 | {bio,cloud} |
- cluster3 | 6 | {bio} |
dazzdb | 6 | {bio} |
indelible | 6 | {bio} |
jaligner | 6 | {bio} |
+ libminc | 6 | {imaging-dev} |
libsbml | 6 | {bio-dev} |
maqview | 6 | {bio} |
melting | 6 | {bio,cloud} |
- orthanc-dicomweb | 6 | {covid-19,imaging} |
- orthanc-mysql | 6 | {imaging} |
piler | 6 | {bio} |
- pymia | 6 | {imaging-dev} |
- salmon | 6 | {bio} |
seer | 6 | {bio} |
anfo | 5 | {cloud,bio} |
bart-view | 5 | {imaging} |
@@ -63,19 +59,23 @@ Last-Update: Sun, 10 May 2020 01:42:04 +0000
bio-tradis | 5 | {bio-dev,bio} |
bppsuite | 5 | {bio} |
brig | 5 | {bio} |
+ cluster3 | 5 | {bio} |
codonw | 5 | {bio} |
edtsurf | 5 | {bio} |
embassy-domainatrix | 5 | {cloud,bio} |
embassy-domalign | 5 | {cloud,bio} |
+ fitgcp | 5 | {bio,cloud} |
freecontact | 5 | {bio,cloud} |
jellyfish1 | 5 | {bio} |
libgff | 5 | {bio-dev} |
- libminc | 5 | {imaging-dev} |
mhap | 5 | {bio-ngs,bio} |
ncbi-seg | 5 | {bio} |
norsp | 5 | {bio} |
+ nutsqlite | 5 | {tools} |
+ orthanc-postgresql | 5 | {imaging} |
phast | 5 | {bio} |
psychopy | 5 | {psychology} |
+ pymia | 5 | {imaging-dev} |
sibsim4 | 5 | {bio,cloud} |
sigma-align | 5 | {bio-phylogeny,cloud,bio} |
spread-phy | 5 | {bio,bio-phylogeny} |
@@ -83,13 +83,11 @@ Last-Update: Sun, 10 May 2020 01:42:04 +0000
staden | 5 | {bio} |
transrate-tools | 5 | {bio} |
transtermhp | 5 | {bio} |
- treeview | 5 | {bio-phylogeny,bio} |
zalign | 5 | {cloud,bio} |
abacas | 4 | {bio,covid-19} |
biomaj3-daemon | 4 | {bio} |
bitseq | 4 | {bio} |
clonalorigin | 4 | {bio} |
- cufflinks | 4 | {cloud,bio} |
daligner | 4 | {bio,bio-ngs} |
ecopcr | 4 | {bio} |
embassy-domsearch | 4 | {cloud,bio} |
@@ -106,8 +104,6 @@ Last-Update: Sun, 10 May 2020 01:42:04 +0000
microbegps | 4 | {bio} |
mrs | 4 | {bio} |
neobio | 4 | {bio,cloud} |
- nutsqlite | 4 | {tools} |
- orthanc-postgresql | 4 | {imaging} |
paml | 4 | {bio} |
paraclu | 4 | {cloud,bio} |
phybin | 4 | {bio} |
@@ -118,6 +114,7 @@ Last-Update: Sun, 10 May 2020 01:42:04 +0000
probabel | 4 | {cloud,bio} |
pscan-tfbs | 4 | {bio} |
radiant | 4 | {bio} |
+ rambo-k | 4 | {bio} |
rdp-alignment | 4 | {bio} |
rdp-readseq | 4 | {bio} |
repeatmasker-recon | 4 | {bio} |
@@ -127,6 +124,7 @@ Last-Update: Sun, 10 May 2020 01:42:04 +0000
sickle | 4 | {bio} |
squizz | 4 | {bio,cloud} |
srf | 4 | {bio-dev} |
+ treeview | 4 | {bio-phylogeny,bio} |
assemblytics | 3 | {bio} |
baitfisher | 3 | {bio} |
bandage | 3 | {bio} |
@@ -135,6 +133,7 @@ Last-Update: Sun, 10 May 2020 01:42:04 +0000
canu | 3 | {bio} |
centrifuge | 3 | {bio} |
clonalframeml | 3 | {covid-19,bio} |
+ cufflinks | 3 | {cloud,bio} |
dascrubber | 3 | {bio} |
delly | 3 | {bio,covid-19} |
dicompyler | 3 | {oncology} |
@@ -157,6 +156,7 @@ Last-Update: Sun, 10 May 2020 01:42:04 +0000
rdp-classifier | 3 | {bio} |
relion | 3 | {bio} |
roguenarok | 3 | {bio} |
+ runcircos-gui | 3 | {bio} |
segemehl | 3 | {bio} |
seqtools | 3 | {bio} |
sga | 3 | {bio} |
@@ -166,10 +166,8 @@ Last-Update: Sun, 10 May 2020 01:42:04 +0000
atropos | 2 | {bio} |
biosig4c++ | 2 | {physics,imaging-dev} |
blasr | 2 | {bio-ngs,bio} |
- blimps | 2 | {bio} |
dwgsim | 2 | {bio} |
elph | 2 | {bio} |
- embassy-phylip | 2 | {cloud,bio} |
getdata | 2 | {bio} |
ghmm | 2 | {bio} |
hinge | 2 | {bio} |
@@ -184,6 +182,7 @@ Last-Update: Sun, 10 May 2020 01:42:04 +0000
mlv-smile | 2 | {bio,cloud} |
mptp | 2 | {bio} |
nanook | 2 | {bio} |
+ ngs-sdk | 2 | {bio-dev} |
openslide | 2 | {imaging-dev} |
patman | 2 | {bio} |
phipack | 2 | {bio} |
@@ -193,24 +192,23 @@ Last-Update: Sun, 10 May 2020 01:42:04 +0000
qcumber | 2 | {bio} |
quorum | 2 | {bio} |
rtax | 2 | {cloud,bio} |
- runcircos-gui | 2 | {bio} |
samtools-legacy | 2 | {bio-dev} |
scrm | 2 | {bio} |
seqmagick | 2 | {bio,covid-19} |
seqsero | 2 | {bio} |
- sift | 2 | {bio} |
snap-aligner | 2 | {bio} |
spaced | 2 | {bio} |
suitename | 2 | {bio} |
surankco | 2 | {bio} |
tnseq-transit | 2 | {covid-19,bio} |
tracetuner | 2 | {bio} |
- varscan | 2 | {bio,covid-19} |
velvetoptimiser | 2 | {bio} |
vsearch | 2 | {bio} |
yaha | 2 | {bio} |
biobambam2 | 1 | {covid-19,bio-dev,bio} |
+ blimps | 1 | {bio} |
ctn | 1 | {imaging-dev} |
+ embassy-phylip | 1 | {cloud,bio} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
@@ -220,10 +218,8 @@ Last-Update: Sun, 10 May 2020 01:42:04 +0000
libmialm | 1 | {imaging-dev} |
libsmithwaterman | 1 | {bio-dev} |
libxdf | 1 | {imaging-dev} |
- mssstest | 1 | {tools} |
multiqc | 1 | {bio,covid-19} |
ncbi-vdb | 1 | {bio-dev} |
- ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
oscar | 1 | {data,tools,practice} |
pal2nal | 1 | {bio} |
@@ -234,16 +230,16 @@ Last-Update: Sun, 10 May 2020 01:42:04 +0000
relion | 1 | {bio} |
samblaster | 1 | {covid-19,bio} |
seqan | 1 | {bio-dev} |
- seq-gen | 1 | {bio} |
+ sift | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
- solvate | 1 | {bio} |
spaln | 1 | {covid-19,bio} |
stringtie | 1 | {bio,covid-19} |
sweed | 1 | {bio} |
trace2dbest | 1 | {bio} |
tree-puzzle | 1 | {cloud,bio,bio-phylogeny} |
tvc | 1 | {bio} |
+ varscan | 1 | {bio,covid-19} |
volpack | 1 | {imaging-dev} |
acedb | 0 | {bio,cloud} |
augur | 0 | {covid-19,bio} |
@@ -284,6 +280,7 @@ Last-Update: Sun, 10 May 2020 01:42:04 +0000
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
milib | 0 | {bio-dev,covid-19} |
+ mssstest | 0 | {tools} |
murasaki | 0 | {bio} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
@@ -292,16 +289,18 @@ Last-Update: Sun, 10 May 2020 01:42:04 +0000
pilercr | 0 | {bio} |
pycoqc | 0 | {covid-19,bio} |
python-py2bit | 0 | {bio,bio-dev} |
- relion | 0 | {bio} |
relion | 0 | {bio-dev} |
+ relion | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
+ seq-gen | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
+ solvate | 0 | {bio} |
thesias | 0 | {covid-19,bio} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
bustools | -1 | {bio} |
-(330 rows)
+(329 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d2fc6bf02eaa0e1ae5706a93d5667a78c83388ec
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d2fc6bf02eaa0e1ae5706a93d5667a78c83388ec
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