Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
22024d70 by Andreas Tille at 2020-05-11T13:46:13+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,117 +1,114 @@
-Last-Update: Mon, 11 May 2020 01:42:04 +0000
+Last-Update: Mon, 11 May 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 187 | {covid-19,imaging} |
+ dcmtk | 188 | {imaging,covid-19} |
orthanc | 94 | {practice,imaging,covid-19} |
- gdcm | 53 | {imaging-dev} |
- orthanc-wsi | 48 | {practice,covid-19,laboratory,imaging,oncology,his} |
- dicom3tools | 35 | {imaging} |
+ gdcm | 52 | {imaging-dev} |
+ orthanc-wsi | 48 | {practice,covid-19,imaging,his,oncology,laboratory} |
+ dicom3tools | 34 | {imaging} |
dicomscope | 33 | {imaging} |
- htsjdk | 33 | {bio-dev} |
- gdcm | 27 | {imaging,covid-19} |
- dcm2niix | 23 | {imaging} |
+ htsjdk | 32 | {bio-dev} |
+ dcm2niix | 25 | {imaging} |
+ gdcm | 25 | {covid-19,imaging} |
pixelmed | 20 | {imaging} |
- minc-tools | 18 | {imaging} |
openslide | 18 | {imaging} |
invesalius | 17 | {imaging} |
- plastimatch | 17 | {imaging} |
- king | 16 | {imaging,typesetting} |
- gnumed-server | 15 | {practice,covid-19} |
+ minc-tools | 17 | {imaging} |
+ king | 16 | {typesetting,imaging} |
+ plastimatch | 16 | {imaging} |
+ gnumed-server | 15 | {covid-19,practice} |
ngs-sdk | 14 | {bio-dev} |
vtk-dicom | 14 | {imaging} |
- biosig4c++ | 13 | {physics,imaging} |
+ biosig4c++ | 13 | {imaging,physics} |
+ gdcm | 13 | {imaging-dev} |
insighttoolkit4 | 13 | {imaging-dev} |
adun.app | 12 | {bio} |
- gdcm | 12 | {imaging-dev} |
- jebl2 | 11 | {bio-dev} |
- obitools | 11 | {bio} |
biojava-live | 10 | {bio-dev} |
+ jebl2 | 10 | {bio-dev} |
+ obitools | 10 | {bio} |
+ orthanc-webviewer | 9 | {imaging} |
+ librg-utils-perl | 8 | {bio} |
ngs-sdk | 8 | {bio-dev} |
- orthanc-webviewer | 8 | {imaging} |
- tree-puzzle | 8 | {bio-phylogeny,cloud,bio} |
+ orthanc-dicomweb | 8 | {covid-19,imaging} |
+ tree-puzzle | 8 | {cloud,bio,bio-phylogeny} |
cgview | 7 | {bio} |
ea-utils | 7 | {bio} |
- fastlink | 7 | {bio,cloud} |
+ fastlink | 7 | {cloud,bio} |
gasic | 7 | {bio,cloud} |
- librg-utils-perl | 7 | {bio} |
- mipe | 7 | {cloud,bio} |
- orthanc-dicomweb | 7 | {covid-19,imaging} |
+ melting | 7 | {bio,cloud} |
orthanc-mysql | 7 | {imaging} |
- salmon | 7 | {bio} |
alter-sequence-alignment | 6 | {bio} |
- ampliconnoise | 6 | {cloud,bio} |
arden | 6 | {bio,cloud} |
- dazzdb | 6 | {bio} |
indelible | 6 | {bio} |
- jaligner | 6 | {bio} |
libminc | 6 | {imaging-dev} |
libsbml | 6 | {bio-dev} |
maqview | 6 | {bio} |
- melting | 6 | {bio,cloud} |
+ mipe | 6 | {bio,cloud} |
+ nutsqlite | 6 | {tools} |
+ orthanc-postgresql | 6 | {imaging} |
piler | 6 | {bio} |
- seer | 6 | {bio} |
- anfo | 5 | {cloud,bio} |
+ salmon | 6 | {bio} |
+ staden | 6 | {bio} |
+ ampliconnoise | 5 | {cloud,bio} |
+ anfo | 5 | {bio,cloud} |
bart-view | 5 | {imaging} |
beast-mcmc | 5 | {bio,bio-phylogeny} |
biomaj3-cli | 5 | {cloud} |
bio-rainbow | 5 | {bio} |
- bio-tradis | 5 | {bio-dev,bio} |
+ bio-tradis | 5 | {bio,bio-dev} |
bppsuite | 5 | {bio} |
brig | 5 | {bio} |
cluster3 | 5 | {bio} |
- codonw | 5 | {bio} |
+ dazzdb | 5 | {bio} |
edtsurf | 5 | {bio} |
embassy-domainatrix | 5 | {cloud,bio} |
- embassy-domalign | 5 | {cloud,bio} |
- fitgcp | 5 | {bio,cloud} |
+ embassy-domalign | 5 | {bio,cloud} |
+ fitgcp | 5 | {cloud,bio} |
freecontact | 5 | {bio,cloud} |
+ jaligner | 5 | {bio} |
jellyfish1 | 5 | {bio} |
libgff | 5 | {bio-dev} |
- mhap | 5 | {bio-ngs,bio} |
ncbi-seg | 5 | {bio} |
norsp | 5 | {bio} |
- nutsqlite | 5 | {tools} |
- orthanc-postgresql | 5 | {imaging} |
- phast | 5 | {bio} |
psychopy | 5 | {psychology} |
pymia | 5 | {imaging-dev} |
- sibsim4 | 5 | {bio,cloud} |
+ seer | 5 | {bio} |
+ sibsim4 | 5 | {cloud,bio} |
sigma-align | 5 | {bio-phylogeny,cloud,bio} |
- spread-phy | 5 | {bio,bio-phylogeny} |
stacks | 5 | {bio} |
- staden | 5 | {bio} |
transrate-tools | 5 | {bio} |
transtermhp | 5 | {bio} |
- zalign | 5 | {cloud,bio} |
abacas | 4 | {bio,covid-19} |
biomaj3-daemon | 4 | {bio} |
bitseq | 4 | {bio} |
clonalorigin | 4 | {bio} |
- daligner | 4 | {bio,bio-ngs} |
+ codonw | 4 | {bio} |
+ daligner | 4 | {bio-ngs,bio} |
ecopcr | 4 | {bio} |
+ elastix | 4 | {imaging} |
embassy-domsearch | 4 | {cloud,bio} |
- freebayes | 4 | {bio} |
gatb-core | 4 | {bio} |
harvest-tools | 4 | {bio} |
ipig | 4 | {bio} |
- jmodeltest | 4 | {bio,bio-phylogeny} |
+ jmodeltest | 4 | {bio-phylogeny,bio} |
king-probe | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
libncl | 4 | {bio} |
libpal-java | 4 | {bio-dev} |
- mapsembler2 | 4 | {cloud,bio} |
+ mapsembler2 | 4 | {bio,cloud} |
+ mhap | 4 | {bio-ngs,bio} |
microbegps | 4 | {bio} |
mrs | 4 | {bio} |
- neobio | 4 | {bio,cloud} |
+ neobio | 4 | {cloud,bio} |
paml | 4 | {bio} |
- paraclu | 4 | {cloud,bio} |
+ paraclu | 4 | {bio,cloud} |
+ phast | 4 | {bio} |
phybin | 4 | {bio} |
- phyutility | 4 | {cloud,bio} |
+ phyutility | 4 | {bio,cloud} |
poretools | 4 | {bio} |
predictprotein | 4 | {bio} |
- prime-phylo | 4 | {bio,cloud} |
- probabel | 4 | {cloud,bio} |
+ probabel | 4 | {bio,cloud} |
pscan-tfbs | 4 | {bio} |
radiant | 4 | {bio} |
rambo-k | 4 | {bio} |
@@ -122,39 +119,37 @@ Last-Update: Mon, 11 May 2020 01:42:04 +0000
scythe | 4 | {bio} |
seqtools | 4 | {bio} |
sickle | 4 | {bio} |
+ spread-phy | 4 | {bio,bio-phylogeny} |
squizz | 4 | {bio,cloud} |
srf | 4 | {bio-dev} |
treeview | 4 | {bio-phylogeny,bio} |
+ zalign | 4 | {bio,cloud} |
assemblytics | 3 | {bio} |
baitfisher | 3 | {bio} |
- bandage | 3 | {bio} |
beads | 3 | {bio} |
beast2-mcmc | 3 | {bio} |
canu | 3 | {bio} |
- centrifuge | 3 | {bio} |
clonalframeml | 3 | {covid-19,bio} |
- cufflinks | 3 | {cloud,bio} |
+ cufflinks | 3 | {bio,cloud} |
dascrubber | 3 | {bio} |
- delly | 3 | {bio,covid-19} |
dicompyler | 3 | {oncology} |
dindel | 3 | {bio} |
- elastix | 3 | {imaging} |
estscan | 3 | {bio} |
fastml | 3 | {bio} |
+ freebayes | 3 | {bio} |
fsm-lite | 3 | {bio} |
kma | 3 | {bio} |
lagan | 3 | {bio} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
- libsmithwaterman | 3 | {bio} |
mauve-aligner | 3 | {bio} |
murasaki | 3 | {bio} |
- perm | 3 | {cloud,bio} |
+ perm | 3 | {bio,cloud} |
placnet | 3 | {bio} |
+ prime-phylo | 3 | {bio,cloud} |
prottest | 3 | {bio-phylogeny,bio} |
pscan-chip | 3 | {bio} |
qrisk2 | 3 | {practice} |
rdp-classifier | 3 | {bio} |
- relion | 3 | {bio} |
roguenarok | 3 | {bio} |
runcircos-gui | 3 | {bio} |
segemehl | 3 | {bio} |
@@ -164,8 +159,12 @@ Last-Update: Mon, 11 May 2020 01:42:04 +0000
soapsnp | 3 | {bio} |
sprai | 3 | {bio} |
atropos | 2 | {bio} |
+ bandage | 2 | {bio} |
+ biosig4c++ | 2 | {imaging-dev,physics} |
biosig4c++ | 2 | {physics,imaging-dev} |
- blasr | 2 | {bio-ngs,bio} |
+ blasr | 2 | {bio,bio-ngs} |
+ centrifuge | 2 | {bio} |
+ delly | 2 | {covid-19,bio} |
dwgsim | 2 | {bio} |
elph | 2 | {bio} |
getdata | 2 | {bio} |
@@ -174,6 +173,7 @@ Last-Update: Mon, 11 May 2020 01:42:04 +0000
kmerresistance | 2 | {bio} |
lamarc | 2 | {bio} |
libctapimkt | 2 | {practice} |
+ libsmithwaterman | 2 | {bio} |
libvistaio | 2 | {imaging-dev} |
logol | 2 | {bio} |
maffilter | 2 | {bio} |
@@ -191,6 +191,7 @@ Last-Update: Mon, 11 May 2020 01:42:04 +0000
python-scitrack | 2 | {covid-19} |
qcumber | 2 | {bio} |
quorum | 2 | {bio} |
+ relion | 2 | {bio} |
rtax | 2 | {cloud,bio} |
samtools-legacy | 2 | {bio-dev} |
scrm | 2 | {bio} |
@@ -205,23 +206,23 @@ Last-Update: Mon, 11 May 2020 01:42:04 +0000
velvetoptimiser | 2 | {bio} |
vsearch | 2 | {bio} |
yaha | 2 | {bio} |
- biobambam2 | 1 | {covid-19,bio-dev,bio} |
+ biobambam2 | 1 | {bio,covid-19,bio-dev} |
blimps | 1 | {bio} |
ctn | 1 | {imaging-dev} |
- embassy-phylip | 1 | {cloud,bio} |
+ embassy-phylip | 1 | {bio,cloud} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
libbio-mage-utils-perl | 1 | {bio-dev} |
libchado-perl | 1 | {bio-dev} |
- libmaus2 | 1 | {covid-19,bio-dev} |
+ libmaus2 | 1 | {bio-dev,covid-19} |
libmialm | 1 | {imaging-dev} |
libsmithwaterman | 1 | {bio-dev} |
libxdf | 1 | {imaging-dev} |
- multiqc | 1 | {bio,covid-19} |
+ multiqc | 1 | {covid-19,bio} |
ncbi-vdb | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
- oscar | 1 | {data,tools,practice} |
+ oscar | 1 | {practice,tools,data} |
pal2nal | 1 | {bio} |
papyrus | 1 | {imaging-dev} |
pbdagcon | 1 | {bio} |
@@ -234,15 +235,15 @@ Last-Update: Mon, 11 May 2020 01:42:04 +0000
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
spaln | 1 | {covid-19,bio} |
- stringtie | 1 | {bio,covid-19} |
+ stringtie | 1 | {covid-19,bio} |
sweed | 1 | {bio} |
trace2dbest | 1 | {bio} |
- tree-puzzle | 1 | {cloud,bio,bio-phylogeny} |
+ tree-puzzle | 1 | {bio,bio-phylogeny,cloud} |
tvc | 1 | {bio} |
- varscan | 1 | {bio,covid-19} |
+ varscan | 1 | {covid-19,bio} |
volpack | 1 | {imaging-dev} |
acedb | 0 | {bio,cloud} |
- augur | 0 | {covid-19,bio} |
+ augur | 0 | {bio,covid-19} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
biojava4-live | 0 | {bio-dev} |
@@ -251,7 +252,7 @@ Last-Update: Mon, 11 May 2020 01:42:04 +0000
camp | 0 | {imaging-dev} |
fis-gtm | 0 | {his} |
freecontact | 0 | {bio-dev} |
- htscodecs | 0 | {covid-19,bio-dev} |
+ htscodecs | 0 | {bio-dev,covid-19} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
@@ -266,7 +267,7 @@ Last-Update: Mon, 11 May 2020 01:42:04 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
libmems | 0 | {bio-dev} |
libmuscle | 0 | {bio-dev} |
@@ -279,7 +280,7 @@ Last-Update: Mon, 11 May 2020 01:42:04 +0000
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
+ milib | 0 | {covid-19,bio-dev} |
mssstest | 0 | {tools} |
murasaki | 0 | {bio} |
opencfu | 0 | {laboratory} |
@@ -288,19 +289,19 @@ Last-Update: Mon, 11 May 2020 01:42:04 +0000
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
pycoqc | 0 | {covid-19,bio} |
- python-py2bit | 0 | {bio,bio-dev} |
+ python-py2bit | 0 | {bio-dev,bio} |
relion | 0 | {bio-dev} |
relion | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {covid-19,bio} |
solvate | 0 | {bio} |
thesias | 0 | {covid-19,bio} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
bustools | -1 | {bio} |
-(329 rows)
+(330 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/22024d70deae61f5e49af441ab2d24a87ba55359
--
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