[med-svn] [Git][med-team/gasic][master] Move examples to another binary: gasic-examples

[Pranav Ballaney]

Pranav Ballaney pushed to branch master at Debian Med / gasic


Commits:
08e97199 by Pranav Ballaney at 2020-05-12T04:50:25+05:30
Move examples to another binary: gasic-examples

- - - - -


10 changed files:

- debian/README.test
- debian/control
- + debian/gasic-examples.examples
- debian/docs → debian/gasic.docs
- debian/examples → debian/gasic.examples
- debian/install → debian/gasic.install
- debian/links → debian/gasic.links
- debian/manpages → debian/gasic.manpages
- + debian/log.txt
- debian/tests/run-unit-test


Changes:

=====================================
debian/README.test
=====================================
@@ -1,7 +1,8 @@
 Notes on how this package can be tested.
 ────────────────────────────────────────
 
-This package can be tested by running the provided test:
+This package can be tested by running the tests that come
+with gasic-examples by the following command: 
 
     sh run-unit-test
 


=====================================
debian/control
=====================================
@@ -38,3 +38,29 @@ Description: genome abundance similarity correction
  method to correct read alignment results for the ambiguities imposed by
  similarities of genomes. It has superior performance over existing
  methods.
+
+Package: gasic-examples
+Architecture: all
+Depends: ${misc:Depends},
+         ${python3:Depends},
+         python3-scipy,
+         python3-numpy,
+         python3-biopython,
+         python3-pysam,
+         python3-matplotlib,
+         bowtie,
+         bowtie2,
+         bwa,
+         seqan-apps,
+         gasic
+Description: genome abundance similarity correction
+ One goal of sequencing based metagenomic analysis is the quantitative
+ taxonomic assessment of microbial community compositions. However, the
+ majority of approaches either quantify at low resolution (e.g. at phylum
+ level) or have severe problems discerning highly similar species. Yet,
+ accurate quantification on species level is desirable in applications
+ such as metagenomic diagnostics or community comparison. GASiC is a
+ method to correct read alignment results for the ambiguities imposed by
+ similarities of genomes. It has superior performance over existing
+ methods.
+ This packages includes some examples that can be used for testing gasic.
\ No newline at end of file


=====================================
debian/gasic-examples.examples
=====================================
@@ -0,0 +1 @@
+debian/tests/data/*


=====================================
debian/docs → debian/gasic.docs
=====================================


=====================================
debian/examples → debian/gasic.examples
=====================================
@@ -1,3 +1,2 @@
 doc/example_script.py
 debian/README.example
-debian/tests/data/*
\ No newline at end of file


=====================================
debian/install → debian/gasic.install
=====================================


=====================================
debian/links → debian/gasic.links
=====================================


=====================================
debian/manpages → debian/gasic.manpages
=====================================


=====================================
debian/log.txt
=====================================
@@ -0,0 +1,2 @@
+usage: autopkgtest [options] [testbinary ...] testsrc -- virt-server [options]
+autopkgtest: error: . is not a valid test package


=====================================
debian/tests/run-unit-test
=====================================
@@ -1,7 +1,7 @@
 #!/bin/bash
 set -e
 
-pkg=gasic
+pkg=gasic-examples
 
 export LC_ALL=C.UTF-8
 if [ "${AUTOPKGTEST_TMP}" = "" ] ; then



View it on GitLab: https://salsa.debian.org/med-team/gasic/-/commit/08e971991d615825981d26f94219118818e8def7

-- 
View it on GitLab: https://salsa.debian.org/med-team/gasic/-/commit/08e971991d615825981d26f94219118818e8def7
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200511/55b6440a/attachment-0001.html>