[med-svn] [Git][med-team/allelecount][master] 4 commits: Fix typo

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / allelecount


Commits:
31652ab4 by Andreas Tille at 2020-05-12T11:31:30+02:00
Fix typo

- - - - -
6c443d1b by Andreas Tille at 2020-05-12T11:34:00+02:00
Add ITP bug

- - - - -
871067d0 by Andreas Tille at 2020-05-12T11:37:18+02:00
Use finally the correct package name

- - - - -
d728c8b5 by Andreas Tille at 2020-05-12T11:37:52+02:00
Hardening

- - - - -


4 changed files:

- debian/changelog
- debian/liballelecount-perl.lintian-overrides
- + debian/patches/hardening.patch
- + debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,5 +1,5 @@
 allelecount (4.1.0-1) UNRELEASED; urgency=medium
 
-  * Initial release (Closes: #<bug>)
+  * Initial release (Closes: #960345)
 
  -- Andreas Tille <tille at debian.org>  Mon, 11 May 2020 16:16:46 +0200


=====================================
debian/liballelecount-perl.lintian-overrides
=====================================
@@ -1,2 +1,2 @@
 # see https://lists.debian.org/debian-med/2018/06/msg00043.html
-libalelecounter-perl: script-with-language-extension usr/bin/*.*
+liballelecount-perl: script-with-language-extension usr/bin/*.*


=====================================
debian/patches/hardening.patch
=====================================
@@ -0,0 +1,24 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Mon, 11 May 2020 16:16:46 +0200
+Description: Propagate hardening flags
+
+--- a/c/Makefile
++++ b/c/Makefile
+@@ -6,7 +6,7 @@ CC = gcc -O3 -DALLELECOUNTER_VERSION='"$
+ #compiler flags
+ # -g adds debug info to the executable file
+ # -Wall turns on most warnings from compiler
+-CFLAGS = -g -Wall
++CFLAGS += -g -Wall
+ 
+ #Location of samtools/htslib libraries
+ HTSLOC?=$(HTSLIB)
+@@ -67,7 +67,7 @@ all: clean make_bin make_htslib_tmp $(CO
+ 	@echo  Binaries have been compiled.
+ 
+ $(COUNTER_TARGET): $(OBJS)
+-	$(CC) $(JOIN_INCLUDES) $(INCLUDES) $(CFLAGS) -o $(COUNTER_TARGET) $(OBJS) $(LFLAGS) $(CAT_LFLAGS) $(LIBS) ./src/alleleCounter.c
++	$(CC) $(JOIN_INCLUDES) $(INCLUDES) $(CFLAGS) -o $(COUNTER_TARGET) $(OBJS) $(LFLAGS) $(CAT_LFLAGS) $(LIBS) ./src/alleleCounter.c $(LDFLAGS)
+ 
+ #Unit Tests
+ test: $(COUNTER_TARGET)


=====================================
debian/patches/series
=====================================
@@ -0,0 +1 @@
+hardening.patch



View it on GitLab: https://salsa.debian.org/med-team/allelecount/-/compare/e3f44a9c9627a27df84f7fde78f8889fe86f1e52...d728c8b593bb69cd62f85cf06aa4522cb99ea4cb

-- 
View it on GitLab: https://salsa.debian.org/med-team/allelecount/-/compare/e3f44a9c9627a27df84f7fde78f8889fe86f1e52...d728c8b593bb69cd62f85cf06aa4522cb99ea4cb
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