[med-svn] [Git][med-team/gasic][master] 6 commits: Update changelog

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / gasic


Commits:
17716dc2 by Andreas Tille at 2020-05-13T08:16:01+02:00
Update changelog

- - - - -
49a517ab by Andreas Tille at 2020-05-13T08:18:55+02:00
TODO: /tmp/autopkgtest.9cTqU1/tree/debian/tests/run-unit-test: line 23:   786 Segmentation fault      bowtie-build dwv.fasta dwv.fasta

- - - - -
26334279 by Andreas Tille at 2020-05-13T08:21:01+02:00
Enhance description and adjust dependencies of example package

- - - - -
7e0117e6 by Andreas Tille at 2020-05-13T08:23:03+02:00
Install the examples into gasic doc dir

- - - - -
536a4190 by Andreas Tille at 2020-05-13T08:25:09+02:00
Provide docs closer to the files that are documented

- - - - -
700420d5 by Andreas Tille at 2020-05-13T08:28:49+02:00
Spelling

- - - - -


6 changed files:

- debian/changelog
- debian/control
- − debian/gasic-examples.examples
- + debian/gasic-examples.install
- debian/gasic.docs
- debian/tests/run-unit-test


Changes:

=====================================
debian/changelog
=====================================
@@ -1,11 +1,16 @@
 gasic (0.0.r19-6) UNRELEASED; urgency=medium
 
+  TODO: /tmp/autopkgtest.9cTqU1/tree/debian/tests/run-unit-test: line 23:   786 Segmentation fault      bowtie-build dwv.fasta dwv.fasta
+
+  * Team upload
+
   [ Steffen Moeller ]
   * d/u/metadata: fixed yaml
 
   [ Pranav Ballaney ]
   * Install examples
   * Add autopkgtests
+  * Move examples to another binary: gasic-examples
 
   [ Andreas Tille ]
   * Standards-Version: 4.5.0 (routine-update)


=====================================
debian/control
=====================================
@@ -28,6 +28,7 @@ Depends: ${misc:Depends},
          bowtie2,
          bwa,
          seqan-apps
+Suggests: gasic-examples
 Description: genome abundance similarity correction
  One goal of sequencing based metagenomic analysis is the quantitative
  taxonomic assessment of microbial community compositions. However, the
@@ -41,19 +42,9 @@ Description: genome abundance similarity correction
 
 Package: gasic-examples
 Architecture: all
-Depends: ${misc:Depends},
-         ${python3:Depends},
-         python3-scipy,
-         python3-numpy,
-         python3-biopython,
-         python3-pysam,
-         python3-matplotlib,
-         bowtie,
-         bowtie2,
-         bwa,
-         seqan-apps,
-         gasic
-Description: genome abundance similarity correction
+Depends: ${misc:Depends}
+Enhances: gasic
+Description: genome abundance similarity correction (example data)
  One goal of sequencing based metagenomic analysis is the quantitative
  taxonomic assessment of microbial community compositions. However, the
  majority of approaches either quantify at low resolution (e.g. at phylum
@@ -63,4 +54,5 @@ Description: genome abundance similarity correction
  method to correct read alignment results for the ambiguities imposed by
  similarities of genomes. It has superior performance over existing
  methods.
- This packages includes some examples that can be used for testing gasic..
\ No newline at end of file
+ .
+ This package includes some examples that can be used for testing gasic.


=====================================
debian/gasic-examples.examples deleted
=====================================
@@ -1 +0,0 @@
-debian/tests/data/*


=====================================
debian/gasic-examples.install
=====================================
@@ -0,0 +1,3 @@
+debian/tests/data/*			usr/share/doc/gasic/examples
+debian/tests/data/README.test_data	usr/share/doc/gasic/
+debian/tests/run-unit-test		usr/share/doc/gasic/


=====================================
debian/gasic.docs
=====================================
@@ -1,5 +1,3 @@
 doc/MANUAL
 README
 debian/README.test
-debian/tests/data/README.test_data
-debian/tests/run-unit-test
\ No newline at end of file


=====================================
debian/tests/run-unit-test
=====================================
@@ -1,14 +1,11 @@
 #!/bin/bash
 set -e
 
-pkg=gasic-examples
+pkg=gasic
 
 export LC_ALL=C.UTF-8
 if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
   AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
-  # Double quote below to expand the temporary directory variable now versus
-  # later is on purpose.
-  # shellcheck disable=SC2064
   trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
 fi
 



View it on GitLab: https://salsa.debian.org/med-team/gasic/-/compare/08e971991d615825981d26f94219118818e8def7...700420d57eff634d7a010390bbebed99a9adde01

-- 
View it on GitLab: https://salsa.debian.org/med-team/gasic/-/compare/08e971991d615825981d26f94219118818e8def7...700420d57eff634d7a010390bbebed99a9adde01
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