[med-svn] [Git][med-team/parallel-fastq-dump][master] Provide test example

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / parallel-fastq-dump


Commits:
678e3f50 by Andreas Tille at 2020-05-13T16:13:48+02:00
Provide test example

- - - - -


4 changed files:

- + debian/README.test
- + debian/docs
- + debian/patches/better_example_using_free_for_download_data.patch
- + debian/patches/series


Changes:

=====================================
debian/README.test
=====================================
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running:
+
+    parallel-fastq-dump --sra-id SRR014849 --threads 4 --outdir out/ --split-files --gzip
+
+in order to confirm its integrity.


=====================================
debian/docs
=====================================
@@ -0,0 +1 @@
+debian/README.test


=====================================
debian/patches/better_example_using_free_for_download_data.patch
=====================================
@@ -0,0 +1,16 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Wed, 13 May 2020 14:43:42 +0200
+Description: Provide an example download that does not require authentification
+ See https://github.com/rvalieris/parallel-fastq-dump/issues/23#issuecomment-522020552
+
+--- a/README.rst
++++ b/README.rst
+@@ -26,7 +26,7 @@ this will get you the sra-tools dependen
+ 
+ Examples
+ --------
+-``$ parallel-fastq-dump --sra-id SRR1219899 --threads 4 --outdir out/ --split-files --gzip``
++``$ parallel-fastq-dump --sra-id SRR014849 --threads 4 --outdir out/ --split-files --gzip``
+ 
+ Micro Benchmark
+ ---------------


=====================================
debian/patches/series
=====================================
@@ -0,0 +1 @@
+better_example_using_free_for_download_data.patch



View it on GitLab: https://salsa.debian.org/med-team/parallel-fastq-dump/-/commit/678e3f50abb0d3b8eceab59d5eb72182343d3454

-- 
View it on GitLab: https://salsa.debian.org/med-team/parallel-fastq-dump/-/commit/678e3f50abb0d3b8eceab59d5eb72182343d3454
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