[med-svn] [Git][med-team/tree-puzzle][master] 5 commits: Team upload

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / tree-puzzle


Commits:
c729e8b3 by Andreas Tille at 2020-05-14T08:12:58+02:00
Team upload

- - - - -
ebcadc98 by Andreas Tille at 2020-05-14T08:13:51+02:00
Another permissions fix

- - - - -
8d6b2077 by Andreas Tille at 2020-05-14T08:33:49+02:00
DEP3

- - - - -
a45d8eee by Andreas Tille at 2020-05-14T08:34:33+02:00
Remove my weak attempt to fix patch results which is not needed any more

- - - - -
266d7468 by Andreas Tille at 2020-05-14T08:39:05+02:00
Upload to unstable

- - - - -


4 changed files:

- debian/changelog
- − debian/patches/patch_test_results.patch
- debian/patches/update_test_results.patch
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,4 +1,6 @@
-tree-puzzle (5.3~rc16+dfsg-1) UNRELEASED; urgency=medium
+tree-puzzle (5.3~rc16+dfsg-1) unstable; urgency=medium
+
+  * Team upload.
 
   [ Andreas Tille ]
   * New upstream pre-release
@@ -17,9 +19,6 @@ tree-puzzle (5.3~rc16+dfsg-1) UNRELEASED; urgency=medium
   * debian/patches/fix-mpi3-build.patch:
     - Fix FTBFS due to the new MPI-3.0 API (Closes: #951984).
 
-  [ Andreas Tille ]
-  * Fix more permissions
-
   [ Pranav Ballaney ]
   * Patch check-* files for tests (Closes: #806214)
   * Enable build time tests


=====================================
debian/patches/patch_test_results.patch deleted
=====================================
@@ -1,31 +0,0 @@
-Author: Andreas Tille <tille at debian.org>
-Last-Update: Wed, 25 Nov 2015 13:10:19 +0100
-Description: Some research was done why basically all tests are
- failing.  It turned out that the results used for comparison
- really diverge from the actuall results.  This patch might
- solve the may be simplest diversion - others are way more complex.
- .
- This needs to be discussed with upstream!
- .
- This patch is not actually used in the packaging just provided
- here as an example for potential problems.
- .
- To check single patches by calling the scripts in dir tests
- make sure you call these by
- .
-     VERSION=5.2 ./<scriptname>
- .
- Otherwise you will simply get an sed error.
-
---- a/tests/check-qp-pure-bin
-+++ b/tests/check-qp-pure-bin
-@@ -168,8 +168,8 @@ trees that have been generated in the 10
- Bipartitions included in the quartet puzzling tree:
- (bipartition with sequences in input order : number of times seen)
- 
-- *..**  :  1000
-  *...*  :  1000
-+ *..**  :  1000
- 
- Congruent bipartitions occurred in 50% or less, not included in 
- the consensus tree:


=====================================
debian/patches/update_test_results.patch
=====================================
@@ -1,3 +1,9 @@
+Author: Pranav Ballaney <ballaneypranav at gmail.com>
+Last-Update: 2020-05-14 02:52:25 +0530
+Description: Test results to compare with are just wrong as discussed
+ with upstream
+ See https://lists.debian.org/debian-med/2020/05/msg00118.html
+
 --- a/tests/check-cons-pure-prot
 +++ b/tests/check-cons-pure-prot
 @@ -15,10 +15,36 @@ SEQUENCE ALIGNMENT


=====================================
debian/rules
=====================================
@@ -40,6 +40,7 @@ override_dh_fixperms:
 	               -name "*.b" -o \
 	               -name "*.ctrees" -o \
 	               -name "*.n" -o \
+	               -name "*.nucl" -o \
 	               -name "*.phy" -o \
 	               -name "*.trees" -o \
 	               -name "check-*-bin" -o \



View it on GitLab: https://salsa.debian.org/med-team/tree-puzzle/-/compare/62de255c7949933fb1898221e44c44abd24681e5...266d74687a5137ee1501a02ca8bfaea2a68b7505

-- 
View it on GitLab: https://salsa.debian.org/med-team/tree-puzzle/-/compare/62de255c7949933fb1898221e44c44abd24681e5...266d74687a5137ee1501a02ca8bfaea2a68b7505
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