Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
479f3c47 by Andreas Tille at 2020-05-14T13:45:50+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,46 +1,46 @@
-Last-Update: Thu, 14 May 2020 01:42:03 +0000
+Last-Update: Thu, 14 May 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 183 | {imaging,covid-19} |
- orthanc | 94 | {covid-19,practice,imaging} |
+ dcmtk | 182 | {covid-19,imaging} |
+ orthanc | 94 | {practice,covid-19,imaging} |
gdcm | 54 | {imaging-dev} |
- orthanc-wsi | 48 | {imaging,covid-19,practice,laboratory,oncology,his} |
+ orthanc-wsi | 49 | {practice,his,imaging,covid-19,laboratory,oncology} |
dicomscope | 33 | {imaging} |
- dicom3tools | 32 | {imaging} |
- htsjdk | 31 | {bio-dev} |
- dcm2niix | 23 | {imaging} |
- gdcm | 23 | {covid-19,imaging} |
- pixelmed | 18 | {imaging} |
- minc-tools | 17 | {imaging} |
- invesalius | 16 | {imaging} |
- gnumed-server | 15 | {practice,covid-19} |
- king | 15 | {imaging,typesetting} |
- openslide | 15 | {imaging} |
- plastimatch | 15 | {imaging} |
+ htsjdk | 32 | {bio-dev} |
+ dicom3tools | 31 | {imaging} |
+ dcm2niix | 21 | {imaging} |
+ gdcm | 21 | {covid-19,imaging} |
+ pixelmed | 17 | {imaging} |
+ gnumed-server | 16 | {practice,covid-19} |
+ minc-tools | 16 | {imaging} |
+ invesalius | 15 | {imaging} |
+ king | 14 | {imaging,typesetting} |
+ openslide | 14 | {imaging} |
+ plastimatch | 14 | {imaging} |
vtk-dicom | 14 | {imaging} |
insighttoolkit4 | 13 | {imaging-dev} |
ngs-sdk | 13 | {bio-dev} |
adun.app | 12 | {bio} |
- biosig4c++ | 12 | {imaging,physics} |
- gdcm | 12 | {imaging-dev} |
+ biosig4c++ | 11 | {imaging,physics} |
+ gdcm | 11 | {imaging-dev} |
biojava-live | 10 | {bio-dev} |
jebl2 | 10 | {bio-dev} |
- obitools | 10 | {bio} |
librg-utils-perl | 9 | {bio} |
- ngs-sdk | 9 | {bio-dev} |
+ obitools | 9 | {bio} |
orthanc-webviewer | 9 | {imaging} |
+ stacks | 9 | {bio} |
ea-utils | 8 | {bio} |
+ ngs-sdk | 8 | {bio-dev} |
orthanc-dicomweb | 8 | {imaging,covid-19} |
- stacks | 8 | {bio} |
- tree-puzzle | 8 | {bio-phylogeny,cloud,bio} |
+ tree-puzzle | 8 | {cloud,bio,bio-phylogeny} |
cgview | 7 | {bio} |
- fastlink | 7 | {bio,cloud} |
+ fastlink | 7 | {cloud,bio} |
gasic | 7 | {cloud,bio} |
- melting | 7 | {cloud,bio} |
+ melting | 7 | {bio,cloud} |
orthanc-mysql | 7 | {imaging} |
alter-sequence-alignment | 6 | {bio} |
- arden | 6 | {cloud,bio} |
+ arden | 6 | {bio,cloud} |
indelible | 6 | {bio} |
libminc | 6 | {imaging-dev} |
libsbml | 6 | {bio-dev} |
@@ -56,58 +56,53 @@ Last-Update: Thu, 14 May 2020 01:42:03 +0000
ampliconnoise | 5 | {bio,cloud} |
anfo | 5 | {bio,cloud} |
bart-view | 5 | {imaging} |
- beast-mcmc | 5 | {bio,bio-phylogeny} |
+ beast-mcmc | 5 | {bio-phylogeny,bio} |
biomaj3-cli | 5 | {cloud} |
bio-rainbow | 5 | {bio} |
- bio-tradis | 5 | {bio-dev,bio} |
+ bio-tradis | 5 | {bio,bio-dev} |
bppsuite | 5 | {bio} |
brig | 5 | {bio} |
cluster3 | 5 | {bio} |
dazzdb | 5 | {bio} |
edtsurf | 5 | {bio} |
- embassy-domainatrix | 5 | {bio,cloud} |
- embassy-domalign | 5 | {cloud,bio} |
- freecontact | 5 | {bio,cloud} |
+ embassy-domainatrix | 5 | {cloud,bio} |
+ embassy-domalign | 5 | {bio,cloud} |
jaligner | 5 | {bio} |
libgff | 5 | {bio-dev} |
+ mrs | 5 | {bio} |
predictprotein | 5 | {bio} |
pymia | 5 | {imaging-dev} |
seer | 5 | {bio} |
sibsim4 | 5 | {cloud,bio} |
- sigma-align | 5 | {bio,bio-phylogeny,cloud} |
+ sigma-align | 5 | {cloud,bio,bio-phylogeny} |
transrate-tools | 5 | {bio} |
transtermhp | 5 | {bio} |
abacas | 4 | {covid-19,bio} |
- biomaj3-daemon | 4 | {bio} |
bitseq | 4 | {bio} |
clonalorigin | 4 | {bio} |
codonw | 4 | {bio} |
daligner | 4 | {bio-ngs,bio} |
ecopcr | 4 | {bio} |
- elastix | 4 | {imaging} |
embassy-domsearch | 4 | {cloud,bio} |
+ freecontact | 4 | {cloud,bio} |
gatb-core | 4 | {bio} |
harvest-tools | 4 | {bio} |
ipig | 4 | {bio} |
jellyfish1 | 4 | {bio} |
- jmodeltest | 4 | {bio-phylogeny,bio} |
+ jmodeltest | 4 | {bio,bio-phylogeny} |
king-probe | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
- libncl | 4 | {bio} |
libpal-java | 4 | {bio-dev} |
- mapsembler2 | 4 | {cloud,bio} |
+ mapsembler2 | 4 | {bio,cloud} |
mhap | 4 | {bio,bio-ngs} |
- microbegps | 4 | {bio} |
- mrs | 4 | {bio} |
neobio | 4 | {cloud,bio} |
paml | 4 | {bio} |
- paraclu | 4 | {cloud,bio} |
+ paraclu | 4 | {bio,cloud} |
phast | 4 | {bio} |
phybin | 4 | {bio} |
- phyutility | 4 | {bio,cloud} |
- poretools | 4 | {bio} |
+ phyutility | 4 | {cloud,bio} |
proalign | 4 | {bio-phylogeny,bio} |
- probabel | 4 | {bio,cloud} |
+ probabel | 4 | {cloud,bio} |
pscan-tfbs | 4 | {bio} |
psychopy | 4 | {psychology} |
radiant | 4 | {bio} |
@@ -119,35 +114,40 @@ Last-Update: Thu, 14 May 2020 01:42:03 +0000
scythe | 4 | {bio} |
seqtools | 4 | {bio} |
sickle | 4 | {bio} |
- spread-phy | 4 | {bio,bio-phylogeny} |
- squizz | 4 | {bio,cloud} |
+ spread-phy | 4 | {bio-phylogeny,bio} |
+ squizz | 4 | {cloud,bio} |
srf | 4 | {bio-dev} |
- treeview | 4 | {bio-phylogeny,bio} |
- zalign | 4 | {bio,cloud} |
+ treeview | 4 | {bio,bio-phylogeny} |
+ zalign | 4 | {cloud,bio} |
assemblytics | 3 | {bio} |
baitfisher | 3 | {bio} |
beads | 3 | {bio} |
beast2-mcmc | 3 | {bio} |
+ biomaj3-daemon | 3 | {bio} |
canu | 3 | {bio} |
clonalframeml | 3 | {bio,covid-19} |
cufflinks | 3 | {cloud,bio} |
dascrubber | 3 | {bio} |
dicompyler | 3 | {oncology} |
dindel | 3 | {bio} |
+ elastix | 3 | {imaging} |
estscan | 3 | {bio} |
fastml | 3 | {bio} |
freebayes | 3 | {covid-19,bio} |
fsm-lite | 3 | {bio} |
kma | 3 | {bio} |
lagan | 3 | {bio} |
+ libncl | 3 | {bio} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
mauve-aligner | 3 | {bio} |
+ microbegps | 3 | {bio} |
murasaki | 3 | {bio} |
ngs-sdk | 3 | {bio-dev} |
- perm | 3 | {bio,cloud} |
+ perm | 3 | {cloud,bio} |
placnet | 3 | {bio} |
+ poretools | 3 | {bio} |
prime-phylo | 3 | {bio,cloud} |
- prottest | 3 | {bio-phylogeny,bio} |
+ prottest | 3 | {bio,bio-phylogeny} |
pscan-chip | 3 | {bio} |
qrisk2 | 3 | {practice} |
rdp-classifier | 3 | {bio} |
@@ -161,10 +161,11 @@ Last-Update: Thu, 14 May 2020 01:42:03 +0000
sprai | 3 | {bio} |
atropos | 2 | {bio} |
bandage | 2 | {bio} |
+ biosig4c++ | 2 | {physics,imaging-dev} |
biosig4c++ | 2 | {imaging-dev,physics} |
blasr | 2 | {bio,bio-ngs} |
- centrifuge | 2 | {covid-19,bio} |
- delly | 2 | {bio,covid-19} |
+ centrifuge | 2 | {bio,covid-19} |
+ delly | 2 | {covid-19,bio} |
dwgsim | 2 | {bio} |
elph | 2 | {bio} |
getdata | 2 | {bio} |
@@ -177,9 +178,8 @@ Last-Update: Thu, 14 May 2020 01:42:03 +0000
libvistaio | 2 | {imaging-dev} |
logol | 2 | {bio} |
maffilter | 2 | {bio} |
- mencal | 2 | {tools} |
metaphlan2 | 2 | {bio} |
- mlv-smile | 2 | {cloud,bio} |
+ mlv-smile | 2 | {bio,cloud} |
mptp | 2 | {bio} |
nanook | 2 | {bio} |
openslide | 2 | {imaging-dev} |
@@ -192,38 +192,38 @@ Last-Update: Thu, 14 May 2020 01:42:03 +0000
rtax | 2 | {cloud,bio} |
samtools-legacy | 2 | {bio-dev} |
scrm | 2 | {bio} |
- seqmagick | 2 | {bio,covid-19} |
+ seqmagick | 2 | {covid-19,bio} |
seqsero | 2 | {bio} |
snap-aligner | 2 | {bio} |
spaced | 2 | {bio} |
stringtie | 2 | {bio,covid-19} |
suitename | 2 | {bio} |
surankco | 2 | {bio} |
- tnseq-transit | 2 | {covid-19,bio} |
+ tnseq-transit | 2 | {bio,covid-19} |
tracetuner | 2 | {bio} |
velvetoptimiser | 2 | {bio} |
vsearch | 2 | {covid-19,bio} |
yaha | 2 | {bio} |
- biobambam2 | 1 | {bio-dev,covid-19,bio} |
+ biobambam2 | 1 | {bio,covid-19,bio-dev} |
blimps | 1 | {bio} |
embassy-phylip | 1 | {cloud,bio} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
libbio-mage-utils-perl | 1 | {bio-dev} |
- libchado-perl | 1 | {bio-dev} |
- libmaus2 | 1 | {bio-dev,covid-19} |
+ libmaus2 | 1 | {covid-19,bio-dev} |
libmialm | 1 | {imaging-dev} |
libsmithwaterman | 1 | {bio-dev} |
libxdf | 1 | {imaging-dev} |
- multiqc | 1 | {covid-19,bio} |
+ mencal | 1 | {tools} |
ncbi-vdb | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
- oscar | 1 | {data,practice,tools} |
+ oscar | 1 | {tools,data,practice} |
pal2nal | 1 | {bio} |
papyrus | 1 | {imaging-dev} |
pbdagcon | 1 | {bio} |
plasmidseeker | 1 | {bio} |
+ python-py2bit | 1 | {bio,bio-dev} |
python-scitrack | 1 | {covid-19} |
rampler | 1 | {bio} |
relion | 1 | {bio} |
@@ -232,15 +232,15 @@ Last-Update: Thu, 14 May 2020 01:42:03 +0000
sift | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
- spaln | 1 | {covid-19,bio} |
+ spaln | 1 | {bio,covid-19} |
sweed | 1 | {bio} |
trace2dbest | 1 | {bio} |
- tree-puzzle | 1 | {bio,bio-phylogeny,cloud} |
+ tree-puzzle | 1 | {cloud,bio-phylogeny,bio} |
tvc | 1 | {bio} |
varscan | 1 | {bio,covid-19} |
volpack | 1 | {imaging-dev} |
- acedb | 0 | {cloud,bio} |
- augur | 0 | {covid-19,bio} |
+ acedb | 0 | {bio,cloud} |
+ augur | 0 | {bio,covid-19} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
biojava4-live | 0 | {bio-dev} |
@@ -261,6 +261,7 @@ Last-Update: Thu, 14 May 2020 01:42:03 +0000
libbpp-raa | 0 | {bio-dev} |
libbpp-seq | 0 | {bio-dev} |
libbpp-seq-omics | 0 | {bio-dev} |
+ libchado-perl | 0 | {bio-dev} |
libdisorder | 0 | {bio-dev} |
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
@@ -280,26 +281,26 @@ Last-Update: Thu, 14 May 2020 01:42:03 +0000
miaviewit | 0 | {imaging-dev} |
milib | 0 | {covid-19,bio-dev} |
mssstest | 0 | {tools} |
+ multiqc | 0 | {covid-19,bio} |
murasaki | 0 | {bio} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
pbcopper | 0 | {bio-dev} |
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
- pycoqc | 0 | {bio,covid-19} |
- python-py2bit | 0 | {bio,bio-dev} |
- relion | 0 | {bio-dev} |
+ pycoqc | 0 | {covid-19,bio} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {bio,covid-19} |
solvate | 0 | {bio} |
- thesias | 0 | {bio,covid-19} |
+ thesias | 0 | {covid-19,bio} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
bustools | -1 | {covid-19,bio} |
-(328 rows)
+(329 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/479f3c47c154d496be04a784664eed0151ba6872
--
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