Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
fc04b019 by Andreas Tille at 2020-05-15T13:45:13+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,45 +1,43 @@
-Last-Update: Fri, 15 May 2020 01:42:04 +0000
+Last-Update: Fri, 15 May 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 182 | {covid-19,imaging} |
- orthanc | 94 | {practice,covid-19,imaging} |
- gdcm | 54 | {imaging-dev} |
- orthanc-wsi | 49 | {practice,his,imaging,covid-19,laboratory,oncology} |
- dicomscope | 33 | {imaging} |
- htsjdk | 32 | {bio-dev} |
- dicom3tools | 31 | {imaging} |
- dcm2niix | 21 | {imaging} |
- gdcm | 21 | {covid-19,imaging} |
- pixelmed | 17 | {imaging} |
+ dcmtk | 185 | {imaging,covid-19} |
+ orthanc | 93 | {imaging,covid-19,practice} |
+ gdcm | 53 | {imaging-dev} |
+ orthanc-wsi | 47 | {oncology,practice,laboratory,his,imaging,covid-19} |
+ htsjdk | 31 | {bio-dev} |
+ dicom3tools | 30 | {imaging} |
+ dicomscope | 30 | {imaging} |
+ dcm2niix | 20 | {imaging} |
+ gdcm | 20 | {covid-19,imaging} |
gnumed-server | 16 | {practice,covid-19} |
- minc-tools | 16 | {imaging} |
+ pixelmed | 16 | {imaging} |
invesalius | 15 | {imaging} |
- king | 14 | {imaging,typesetting} |
- openslide | 14 | {imaging} |
- plastimatch | 14 | {imaging} |
- vtk-dicom | 14 | {imaging} |
+ minc-tools | 15 | {imaging} |
insighttoolkit4 | 13 | {imaging-dev} |
+ king | 13 | {typesetting,imaging} |
ngs-sdk | 13 | {bio-dev} |
+ openslide | 13 | {imaging} |
+ plastimatch | 13 | {imaging} |
+ vtk-dicom | 13 | {imaging} |
adun.app | 12 | {bio} |
- biosig4c++ | 11 | {imaging,physics} |
- gdcm | 11 | {imaging-dev} |
- biojava-live | 10 | {bio-dev} |
+ biojava-live | 11 | {bio-dev} |
+ biosig4c++ | 10 | {imaging,physics} |
+ gdcm | 10 | {imaging-dev} |
jebl2 | 10 | {bio-dev} |
+ stacks | 10 | {bio} |
librg-utils-perl | 9 | {bio} |
obitools | 9 | {bio} |
- orthanc-webviewer | 9 | {imaging} |
- stacks | 9 | {bio} |
- ea-utils | 8 | {bio} |
+ melting | 8 | {bio,cloud} |
ngs-sdk | 8 | {bio-dev} |
- orthanc-dicomweb | 8 | {imaging,covid-19} |
- tree-puzzle | 8 | {cloud,bio,bio-phylogeny} |
+ orthanc-webviewer | 8 | {imaging} |
+ alter-sequence-alignment | 7 | {bio} |
cgview | 7 | {bio} |
- fastlink | 7 | {cloud,bio} |
+ ea-utils | 7 | {bio} |
+ fastlink | 7 | {bio,cloud} |
gasic | 7 | {cloud,bio} |
- melting | 7 | {bio,cloud} |
- orthanc-mysql | 7 | {imaging} |
- alter-sequence-alignment | 6 | {bio} |
+ orthanc-dicomweb | 7 | {imaging,covid-19} |
arden | 6 | {bio,cloud} |
indelible | 6 | {bio} |
libminc | 6 | {imaging-dev} |
@@ -49,17 +47,18 @@ Last-Update: Fri, 15 May 2020 01:42:04 +0000
ncbi-seg | 6 | {bio} |
norsp | 6 | {bio} |
nutsqlite | 6 | {tools} |
- orthanc-postgresql | 6 | {imaging} |
+ orthanc-mysql | 6 | {imaging} |
piler | 6 | {bio} |
salmon | 6 | {bio,covid-19} |
staden | 6 | {bio} |
- ampliconnoise | 5 | {bio,cloud} |
- anfo | 5 | {bio,cloud} |
+ abacas | 5 | {bio,covid-19} |
+ ampliconnoise | 5 | {cloud,bio} |
+ anfo | 5 | {cloud,bio} |
bart-view | 5 | {imaging} |
- beast-mcmc | 5 | {bio-phylogeny,bio} |
+ beast-mcmc | 5 | {bio,bio-phylogeny} |
biomaj3-cli | 5 | {cloud} |
bio-rainbow | 5 | {bio} |
- bio-tradis | 5 | {bio,bio-dev} |
+ bio-tradis | 5 | {bio-dev,bio} |
bppsuite | 5 | {bio} |
brig | 5 | {bio} |
cluster3 | 5 | {bio} |
@@ -69,7 +68,7 @@ Last-Update: Fri, 15 May 2020 01:42:04 +0000
embassy-domalign | 5 | {bio,cloud} |
jaligner | 5 | {bio} |
libgff | 5 | {bio-dev} |
- mrs | 5 | {bio} |
+ orthanc-postgresql | 5 | {imaging} |
predictprotein | 5 | {bio} |
pymia | 5 | {imaging-dev} |
seer | 5 | {bio} |
@@ -77,31 +76,30 @@ Last-Update: Fri, 15 May 2020 01:42:04 +0000
sigma-align | 5 | {cloud,bio,bio-phylogeny} |
transrate-tools | 5 | {bio} |
transtermhp | 5 | {bio} |
- abacas | 4 | {covid-19,bio} |
+ treeview | 5 | {bio,bio-phylogeny} |
bitseq | 4 | {bio} |
- clonalorigin | 4 | {bio} |
codonw | 4 | {bio} |
daligner | 4 | {bio-ngs,bio} |
ecopcr | 4 | {bio} |
- embassy-domsearch | 4 | {cloud,bio} |
- freecontact | 4 | {cloud,bio} |
+ embassy-domsearch | 4 | {bio,cloud} |
gatb-core | 4 | {bio} |
harvest-tools | 4 | {bio} |
ipig | 4 | {bio} |
jellyfish1 | 4 | {bio} |
- jmodeltest | 4 | {bio,bio-phylogeny} |
+ jmodeltest | 4 | {bio-phylogeny,bio} |
king-probe | 4 | {bio} |
+ lagan | 4 | {bio} |
libdivsufsort | 4 | {bio-dev} |
libpal-java | 4 | {bio-dev} |
- mapsembler2 | 4 | {bio,cloud} |
+ mapsembler2 | 4 | {cloud,bio} |
mhap | 4 | {bio,bio-ngs} |
+ mrs | 4 | {bio} |
neobio | 4 | {cloud,bio} |
- paml | 4 | {bio} |
- paraclu | 4 | {bio,cloud} |
+ paraclu | 4 | {cloud,bio} |
phast | 4 | {bio} |
phybin | 4 | {bio} |
phyutility | 4 | {cloud,bio} |
- proalign | 4 | {bio-phylogeny,bio} |
+ proalign | 4 | {bio,bio-phylogeny} |
probabel | 4 | {cloud,bio} |
pscan-tfbs | 4 | {bio} |
psychopy | 4 | {psychology} |
@@ -117,15 +115,16 @@ Last-Update: Fri, 15 May 2020 01:42:04 +0000
spread-phy | 4 | {bio-phylogeny,bio} |
squizz | 4 | {cloud,bio} |
srf | 4 | {bio-dev} |
- treeview | 4 | {bio,bio-phylogeny} |
- zalign | 4 | {cloud,bio} |
+ zalign | 4 | {bio,cloud} |
assemblytics | 3 | {bio} |
baitfisher | 3 | {bio} |
+ bandage | 3 | {bio} |
beads | 3 | {bio} |
beast2-mcmc | 3 | {bio} |
biomaj3-daemon | 3 | {bio} |
canu | 3 | {bio} |
clonalframeml | 3 | {bio,covid-19} |
+ clonalorigin | 3 | {bio} |
cufflinks | 3 | {cloud,bio} |
dascrubber | 3 | {bio} |
dicompyler | 3 | {oncology} |
@@ -136,19 +135,18 @@ Last-Update: Fri, 15 May 2020 01:42:04 +0000
freebayes | 3 | {covid-19,bio} |
fsm-lite | 3 | {bio} |
kma | 3 | {bio} |
- lagan | 3 | {bio} |
libncl | 3 | {bio} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
mauve-aligner | 3 | {bio} |
microbegps | 3 | {bio} |
murasaki | 3 | {bio} |
ngs-sdk | 3 | {bio-dev} |
- perm | 3 | {cloud,bio} |
+ paml | 3 | {bio} |
+ perm | 3 | {bio,cloud} |
placnet | 3 | {bio} |
poretools | 3 | {bio} |
- prime-phylo | 3 | {bio,cloud} |
- prottest | 3 | {bio,bio-phylogeny} |
- pscan-chip | 3 | {bio} |
+ prime-phylo | 3 | {cloud,bio} |
+ prottest | 3 | {bio-phylogeny,bio} |
qrisk2 | 3 | {practice} |
rdp-classifier | 3 | {bio} |
roguenarok | 3 | {bio} |
@@ -156,15 +154,15 @@ Last-Update: Fri, 15 May 2020 01:42:04 +0000
segemehl | 3 | {bio} |
seqtools | 3 | {bio} |
sga | 3 | {bio} |
+ snap-aligner | 3 | {bio} |
soapaligner | 3 | {bio} |
soapsnp | 3 | {bio} |
sprai | 3 | {bio} |
atropos | 2 | {bio} |
- bandage | 2 | {bio} |
- biosig4c++ | 2 | {physics,imaging-dev} |
biosig4c++ | 2 | {imaging-dev,physics} |
+ biosig4c++ | 2 | {physics,imaging-dev} |
blasr | 2 | {bio,bio-ngs} |
- centrifuge | 2 | {bio,covid-19} |
+ centrifuge | 2 | {covid-19,bio} |
delly | 2 | {covid-19,bio} |
dwgsim | 2 | {bio} |
elph | 2 | {bio} |
@@ -186,39 +184,40 @@ Last-Update: Fri, 15 May 2020 01:42:04 +0000
patman | 2 | {bio} |
phipack | 2 | {bio} |
pilon | 2 | {bio} |
+ pscan-chip | 2 | {bio} |
qcumber | 2 | {bio} |
quorum | 2 | {bio} |
relion | 2 | {bio} |
rtax | 2 | {cloud,bio} |
samtools-legacy | 2 | {bio-dev} |
scrm | 2 | {bio} |
- seqmagick | 2 | {covid-19,bio} |
+ seqmagick | 2 | {bio,covid-19} |
seqsero | 2 | {bio} |
- snap-aligner | 2 | {bio} |
spaced | 2 | {bio} |
stringtie | 2 | {bio,covid-19} |
suitename | 2 | {bio} |
surankco | 2 | {bio} |
- tnseq-transit | 2 | {bio,covid-19} |
+ tnseq-transit | 2 | {covid-19,bio} |
tracetuner | 2 | {bio} |
velvetoptimiser | 2 | {bio} |
vsearch | 2 | {covid-19,bio} |
yaha | 2 | {bio} |
+ acedb | 1 | {cloud,bio} |
biobambam2 | 1 | {bio,covid-19,bio-dev} |
blimps | 1 | {bio} |
- embassy-phylip | 1 | {cloud,bio} |
+ embassy-phylip | 1 | {bio,cloud} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
libbio-mage-utils-perl | 1 | {bio-dev} |
- libmaus2 | 1 | {covid-19,bio-dev} |
+ libmaus2 | 1 | {bio-dev,covid-19} |
libmialm | 1 | {imaging-dev} |
libsmithwaterman | 1 | {bio-dev} |
libxdf | 1 | {imaging-dev} |
mencal | 1 | {tools} |
ncbi-vdb | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
- oscar | 1 | {tools,data,practice} |
+ oscar | 1 | {practice,tools,data} |
pal2nal | 1 | {bio} |
papyrus | 1 | {imaging-dev} |
pbdagcon | 1 | {bio} |
@@ -232,15 +231,13 @@ Last-Update: Fri, 15 May 2020 01:42:04 +0000
sift | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
- spaln | 1 | {bio,covid-19} |
+ spaln | 1 | {covid-19,bio} |
sweed | 1 | {bio} |
trace2dbest | 1 | {bio} |
- tree-puzzle | 1 | {cloud,bio-phylogeny,bio} |
tvc | 1 | {bio} |
- varscan | 1 | {bio,covid-19} |
+ varscan | 1 | {covid-19,bio} |
volpack | 1 | {imaging-dev} |
- acedb | 0 | {bio,cloud} |
- augur | 0 | {bio,covid-19} |
+ augur | 0 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
biojava4-live | 0 | {bio-dev} |
@@ -249,8 +246,7 @@ Last-Update: Fri, 15 May 2020 01:42:04 +0000
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
fis-gtm | 0 | {his} |
- freecontact | 0 | {bio-dev} |
- htscodecs | 0 | {covid-19,bio-dev} |
+ htscodecs | 0 | {bio-dev,covid-19} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
@@ -289,18 +285,18 @@ Last-Update: Fri, 15 May 2020 01:42:04 +0000
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
pycoqc | 0 | {covid-19,bio} |
- relion | 0 | {bio} |
relion | 0 | {bio-dev} |
+ relion | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
solvate | 0 | {bio} |
- thesias | 0 | {covid-19,bio} |
+ thesias | 0 | {bio,covid-19} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
- bustools | -1 | {covid-19,bio} |
-(329 rows)
+ bustools | -1 | {bio,covid-19} |
+(325 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fc04b019b6f42c64a01a917aaf133ca683ec2090
--
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