Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
de67e707 by Andreas Tille at 2020-05-16T13:45:55+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,52 +1,48 @@
-Last-Update: Sat, 16 May 2020 01:42:04 +0000
+Last-Update: Sat, 16 May 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 185 | {imaging,covid-19} |
- orthanc | 93 | {imaging,covid-19,practice} |
+ dcmtk | 188 | {imaging,covid-19} |
+ orthanc | 95 | {imaging,covid-19,practice} |
gdcm | 53 | {imaging-dev} |
orthanc-wsi | 47 | {oncology,practice,laboratory,his,imaging,covid-19} |
htsjdk | 31 | {bio-dev} |
- dicom3tools | 30 | {imaging} |
dicomscope | 30 | {imaging} |
+ dicom3tools | 28 | {imaging} |
dcm2niix | 20 | {imaging} |
- gdcm | 20 | {covid-19,imaging} |
+ gdcm | 19 | {covid-19,imaging} |
gnumed-server | 16 | {practice,covid-19} |
- pixelmed | 16 | {imaging} |
- invesalius | 15 | {imaging} |
- minc-tools | 15 | {imaging} |
+ pixelmed | 15 | {imaging} |
+ minc-tools | 14 | {imaging} |
insighttoolkit4 | 13 | {imaging-dev} |
- king | 13 | {typesetting,imaging} |
ngs-sdk | 13 | {bio-dev} |
- openslide | 13 | {imaging} |
- plastimatch | 13 | {imaging} |
- vtk-dicom | 13 | {imaging} |
- adun.app | 12 | {bio} |
- biojava-live | 11 | {bio-dev} |
- biosig4c++ | 10 | {imaging,physics} |
+ invesalius | 12 | {imaging} |
+ king | 12 | {typesetting,imaging} |
+ openslide | 12 | {imaging} |
+ plastimatch | 12 | {imaging} |
+ vtk-dicom | 12 | {imaging} |
+ adun.app | 11 | {bio} |
+ stacks | 11 | {bio} |
+ biojava-live | 10 | {bio-dev} |
gdcm | 10 | {imaging-dev} |
jebl2 | 10 | {bio-dev} |
- stacks | 10 | {bio} |
+ biosig4c++ | 9 | {imaging,physics} |
librg-utils-perl | 9 | {bio} |
+ melting | 9 | {bio,cloud} |
obitools | 9 | {bio} |
- melting | 8 | {bio,cloud} |
ngs-sdk | 8 | {bio-dev} |
orthanc-webviewer | 8 | {imaging} |
alter-sequence-alignment | 7 | {bio} |
- cgview | 7 | {bio} |
ea-utils | 7 | {bio} |
fastlink | 7 | {bio,cloud} |
- gasic | 7 | {cloud,bio} |
orthanc-dicomweb | 7 | {imaging,covid-19} |
arden | 6 | {bio,cloud} |
+ cgview | 6 | {bio} |
indelible | 6 | {bio} |
- libminc | 6 | {imaging-dev} |
- libsbml | 6 | {bio-dev} |
maqview | 6 | {bio} |
mipe | 6 | {bio,cloud} |
ncbi-seg | 6 | {bio} |
norsp | 6 | {bio} |
- nutsqlite | 6 | {tools} |
orthanc-mysql | 6 | {imaging} |
piler | 6 | {bio} |
salmon | 6 | {bio,covid-19} |
@@ -66,10 +62,15 @@ Last-Update: Sat, 16 May 2020 01:42:04 +0000
edtsurf | 5 | {bio} |
embassy-domainatrix | 5 | {cloud,bio} |
embassy-domalign | 5 | {bio,cloud} |
+ gasic | 5 | {cloud,bio} |
jaligner | 5 | {bio} |
libgff | 5 | {bio-dev} |
+ libminc | 5 | {imaging-dev} |
+ libsbml | 5 | {bio-dev} |
+ nutsqlite | 5 | {tools} |
orthanc-postgresql | 5 | {imaging} |
predictprotein | 5 | {bio} |
+ psychopy | 5 | {psychology} |
pymia | 5 | {imaging-dev} |
seer | 5 | {bio} |
sibsim4 | 5 | {cloud,bio} |
@@ -80,6 +81,7 @@ Last-Update: Sat, 16 May 2020 01:42:04 +0000
bitseq | 4 | {bio} |
codonw | 4 | {bio} |
daligner | 4 | {bio-ngs,bio} |
+ dicompyler | 4 | {oncology} |
ecopcr | 4 | {bio} |
embassy-domsearch | 4 | {bio,cloud} |
gatb-core | 4 | {bio} |
@@ -95,6 +97,7 @@ Last-Update: Sat, 16 May 2020 01:42:04 +0000
mhap | 4 | {bio,bio-ngs} |
mrs | 4 | {bio} |
neobio | 4 | {cloud,bio} |
+ paml | 4 | {bio} |
paraclu | 4 | {cloud,bio} |
phast | 4 | {bio} |
phybin | 4 | {bio} |
@@ -102,7 +105,6 @@ Last-Update: Sat, 16 May 2020 01:42:04 +0000
proalign | 4 | {bio,bio-phylogeny} |
probabel | 4 | {cloud,bio} |
pscan-tfbs | 4 | {bio} |
- psychopy | 4 | {psychology} |
radiant | 4 | {bio} |
rambo-k | 4 | {bio} |
rdp-alignment | 4 | {bio} |
@@ -127,7 +129,6 @@ Last-Update: Sat, 16 May 2020 01:42:04 +0000
clonalorigin | 3 | {bio} |
cufflinks | 3 | {cloud,bio} |
dascrubber | 3 | {bio} |
- dicompyler | 3 | {oncology} |
dindel | 3 | {bio} |
elastix | 3 | {imaging} |
estscan | 3 | {bio} |
@@ -141,7 +142,6 @@ Last-Update: Sat, 16 May 2020 01:42:04 +0000
microbegps | 3 | {bio} |
murasaki | 3 | {bio} |
ngs-sdk | 3 | {bio-dev} |
- paml | 3 | {bio} |
perm | 3 | {bio,cloud} |
placnet | 3 | {bio} |
poretools | 3 | {bio} |
@@ -159,8 +159,8 @@ Last-Update: Sat, 16 May 2020 01:42:04 +0000
soapsnp | 3 | {bio} |
sprai | 3 | {bio} |
atropos | 2 | {bio} |
- biosig4c++ | 2 | {imaging-dev,physics} |
biosig4c++ | 2 | {physics,imaging-dev} |
+ biosig4c++ | 2 | {imaging-dev,physics} |
blasr | 2 | {bio,bio-ngs} |
centrifuge | 2 | {covid-19,bio} |
delly | 2 | {covid-19,bio} |
@@ -181,6 +181,7 @@ Last-Update: Sat, 16 May 2020 01:42:04 +0000
mptp | 2 | {bio} |
nanook | 2 | {bio} |
openslide | 2 | {imaging-dev} |
+ oscar | 2 | {practice,tools,data} |
patman | 2 | {bio} |
phipack | 2 | {bio} |
pilon | 2 | {bio} |
@@ -217,7 +218,6 @@ Last-Update: Sat, 16 May 2020 01:42:04 +0000
mencal | 1 | {tools} |
ncbi-vdb | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
- oscar | 1 | {practice,tools,data} |
pal2nal | 1 | {bio} |
papyrus | 1 | {imaging-dev} |
pbdagcon | 1 | {bio} |
@@ -243,6 +243,7 @@ Last-Update: Sat, 16 May 2020 01:42:04 +0000
biojava4-live | 0 | {bio-dev} |
biosig4c++ | 0 | {physics} |
biosyntax | 0 | {bio} |
+ busco | 0 | {covid-19} |
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
fis-gtm | 0 | {his} |
@@ -298,5 +299,6 @@ Last-Update: Sat, 16 May 2020 01:42:04 +0000
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
bustools | -1 | {bio,covid-19} |
-(325 rows)
+ parallel-fastq-dump | -1 | {covid-19} |
+(327 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/de67e707427ee43d3167c059a4d2bf7353c75e94
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/de67e707427ee43d3167c059a4d2bf7353c75e94
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