[med-svn] [Git][med-team/last-align][master] 2 commits: i386: enable avx2, avx, and sse4.1 specific builds as well

[Michael R. Crusoe]

Michael R. Crusoe pushed to branch master at Debian Med / last-align


Commits:
af73543f by Michael R. Crusoe at 2020-05-17T18:15:35+02:00
i386: enable avx2, avx, and sse4.1 specific builds as well

- - - - -
bcc8c5f6 by Michael R. Crusoe at 2020-05-17T18:15:35+02:00
Demote GNU parallel to a recommends; only used by parallel-fasta

- - - - -


3 changed files:

- debian/changelog
- debian/control
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,11 @@
+last-align (1061-2) UNRELEASED; urgency=medium
+
+  * Team upload.
+  * i386: enable avx2, avx, and sse4.1 specific builds as well
+  * Demote GNU parallel to a recommends; only used by parallel-fasta
+
+ -- Michael R. Crusoe <michael.crusoe at gmail.com>  Sun, 17 May 2020 12:32:51 +0200
+
 last-align (1061-1) unstable; urgency=medium
 
   * Team upload.


=====================================
debian/control
=====================================
@@ -20,9 +20,9 @@ Architecture: any
 Built-Using: ${Built-Using}
 Depends: ${shlibs:Depends},
          ${misc:Depends},
-         parallel
 Recommends: python3,
-            python3-pil
+            python3-pil,
+            parallel
 Description: genome-scale comparison of biological sequences
  LAST is software for comparing and aligning sequences, typically DNA or
  protein sequences. LAST is similar to BLAST, but it copes better with very


=====================================
debian/rules
=====================================
@@ -40,7 +40,7 @@ ifeq (amd64,$(DEB_HOST_ARCH))
 else ifeq (i386,$(DEB_HOST_ARCH))
 	mkdir -p $(prefix)
 	mkdir -p $(libexecdir)
-	for SIMD in ssse3 sse3 sse2 sse mmx; do \
+	for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 sse; do \
 		export CXXFLAGS="$(CXXFLAGS) -m$${SIMD}" && export CFLAGS="$(CFLAGS) -m$${SIMD}" && \
 		dh_auto_build -- all SFX=-$${SIMD}  ; \
 		find . -name '*.o' -delete ; \
@@ -79,14 +79,14 @@ ifeq (amd64,$(DEB_HOST_ARCH))
 	for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 ; do \
 		dh_auto_clean -- SFX=-$${SIMD} ; done
 else ifeq (i386,$(DEB_HOST_ARCH))
-	for SIMD in ssse3 sse3 sse2 sse mmx plain; do \
+	for SIMD in avx2 avx sse4.1 ssse3 sse3 sse2 sse plain; do \
 		dh_auto_clean -- SFX=-$${SIMD} ; done
 else
 	dh_auto_clean
 endif
 	for i in last-merge-batches last-pair-probs last-split last-split8 lastal lastal8 lastdb lastdb8; \
 	do \
-	   for j in avx avx2 sse2 sse3 sse4.1 ssse3 ; \
+	   for j in avx avx2 sse2 sse3 sse4.1 ssse3 sse3 sse2 sse ; \
 	   do \
 	      rm -f src/$$i-$$j ; \
 	   done ; \
@@ -105,7 +105,7 @@ override_dh_installman:
 	         --name="genome-scale comparison of biological sequences" \
 	         --help-option="-h" \
                  $(prefix)/bin/lastal8 > $(mandir)/lastal8.1
-        # help2man output needs manual postprocessing - see debian/mans
+	# help2man output needs manual postprocessing - see debian/mans
 	#$(HELP2MAN) \
 	#         --name="genome-scale comparison of biological sequences" \
 	#         --help-option="-h" \
@@ -116,7 +116,7 @@ override_dh_installman:
 	$(HELP2MAN) \
                  --name="changes the order of the sequences in MAF-format alignments" \
                  $(CURDIR)/scripts/maf-swap > $(mandir)/maf-swap.1
-        # help2man output needs manual postprocessing - see debian/mans
+	# help2man output needs manual postprocessing - see debian/mans
 	#$(HELP2MAN) \
         #         --name="Add extra column with mapping probabilities" \
         #         $(CURDIR)/scripts/last-map-probs > $(mandir)/last-map-probs.1
@@ -124,7 +124,7 @@ override_dh_installman:
 	#$(HELP2MAN) \
         #         --name="Read files of lastal output, merge corresponding batches, and write them." \
         #         $(CURDIR)/scripts/last-merge-batches > $(mandir)/last-merge-batches.1
-        # These scripts were droped
+	#         # These scripts were droped
 	#$(HELP2MAN) \
         #         --name="Clean up MAF-format alignments" \
         #         $(CURDIR)/scripts/last-reduce-alignments > $(mandir)/last-reduce-alignments.1
@@ -149,7 +149,7 @@ override_dh_installman:
 	$(HELP2MAN) \
                  --name="Read files of lastal output, merge corresponding batches, and write them" \
                  $(prefix)/bin/last-merge-batches > $(mandir)/last-merge-batches.1
-        # help2man output needs manual postprocessing - see debian/mans
+	# help2man output needs manual postprocessing - see debian/mans
 	#$(HELP2MAN) \
         #         --name="Read alignments of paired DNA reads to a genome, and do estimations" \
         #         $(prefix)/bin/last-pair-probs > $(mandir)/last-pair-probs.1



View it on GitLab: https://salsa.debian.org/med-team/last-align/-/compare/830a97da55db70d0389a90a825c4b2c4d654f5bb...bcc8c5f686990ac3beec20d80595b0168ce0d56c

-- 
View it on GitLab: https://salsa.debian.org/med-team/last-align/-/compare/830a97da55db70d0389a90a825c4b2c4d654f5bb...bcc8c5f686990ac3beec20d80595b0168ce0d56c
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