[med-svn] [Git][med-team/bcbio][master] 5 commits: routine-update: New upstream version

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / bcbio


Commits:
b9a56b6b by Steffen Moeller at 2020-04-30T22:57:32+02:00
routine-update: New upstream version

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40344e2b by Steffen Moeller at 2020-04-30T23:00:11+02:00
New upstream version 1.2.3
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d813befa by Steffen Moeller at 2020-04-30T23:00:47+02:00
Update upstream source from tag 'upstream/1.2.3'

Update to upstream version '1.2.3'
with Debian dir b75e26ba403f157a37df91810f8b80ea7e1880b8
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57f4daf3 by Steffen Moeller at 2020-04-30T23:25:18+02:00
New upstream version.

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c7a190d8 by Steffen Moeller at 2020-05-19T16:37:09+02:00
Simplifying d/watch for r-u

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30 changed files:

- + .github/ISSUE_TEMPLATE/bug_report.md
- .gitignore
- + .readthedocs.yml
- .travis.yml
- − Dockerfile
- HISTORY.md
- + README.md
- − README.rst
- − TODO.md
- bcbio/bam/__init__.py
- bcbio/bam/cram.py
- bcbio/broad/__init__.py
- bcbio/chipseq/atac.py
- bcbio/chipseq/peaks.py
- bcbio/heterogeneity/loh.py
- bcbio/install.py
- bcbio/ngsalign/alignprep.py
- bcbio/ngsalign/bowtie2.py
- bcbio/ngsalign/mosaik.py
- bcbio/ngsalign/postalign.py
- bcbio/pipeline/main.py
- bcbio/pipeline/rnaseq.py
- bcbio/pipeline/run_info.py
- bcbio/qc/multiqc.py
- bcbio/qc/qualimap.py
- bcbio/rnaseq/umi.py
- bcbio/structural/purecn.py
- bcbio/upload/__init__.py
- bcbio/utils.py
- bcbio/variation/gatkjoint.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/compare/421360cf768587c07f83178afc52a01d5b96e89d...c7a190d80ca3acb8c007997f2eeb9a278d0e73f6

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View it on GitLab: https://salsa.debian.org/med-team/bcbio/-/compare/421360cf768587c07f83178afc52a01d5b96e89d...c7a190d80ca3acb8c007997f2eeb9a278d0e73f6
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