[med-svn] [Git][med-team/kma][master] 4 commits: New upstream version 1.2.26

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / kma


Commits:
b75e4f66 by Steffen Moeller at 2020-05-19T23:18:48+02:00
New upstream version 1.2.26
- - - - -
0d0885d5 by Steffen Moeller at 2020-05-19T23:18:48+02:00
routine-update: New upstream version

- - - - -
8e4063cc by Steffen Moeller at 2020-05-19T23:18:49+02:00
Update upstream source from tag 'upstream/1.2.26'

Update to upstream version '1.2.26'
with Debian dir 63ddb2011e1f707a348085505d2f44302ab5e4ad
- - - - -
0b1e5ffa by Steffen Moeller at 2020-05-19T23:19:11+02:00
routine-update: Ready to upload to unstable

- - - - -


3 changed files:

- assembly.c
- debian/changelog
- version.h


Changes:

=====================================
assembly.c
=====================================
@@ -275,6 +275,7 @@ void * assemble_KMA_threaded(void *arg) {
 	
 	static volatile int excludeIn[1] = {0}, excludeOut[1] = {0}, excludeMatrix[1] = {0}, mainTemplate = -2, thread_wait = 0;
 	static char *template_name;
+	static HashMap_index *template_index;
 	Assemble_thread *thread = arg;
 	int i, j, t_len, aln_len, start, end, bias, myBias, gaps, pos, spin, sam;
 	int read_score, depthUpdate, bestBaseScore, bestScore, template, asm_len;
@@ -295,7 +296,6 @@ void * assemble_KMA_threaded(void *arg) {
 	AssemInfo *matrix;
 	AlnPoints *points;
 	NWmat *NWmatrices;
-	HashMap_index *template_index;
 	
 	/* get input */
 	template = thread->template;
@@ -319,7 +319,6 @@ void * assemble_KMA_threaded(void *arg) {
 	sam = thread->sam;
 	spin = thread->spin;
 	thread_num = thread->thread_num;
-	template_index = thread->template_index;
 	
 	if(template != -2) {
 		/* all assemblies done, 
@@ -334,6 +333,7 @@ void * assemble_KMA_threaded(void *arg) {
 		/* Allocate assembly arrays */
 		lock(excludeMatrix);
 		template_name = thread->template_name;
+		template_index = thread->template_index;
 		t_len = template_index->len;
 		matrix->len = t_len;
 		if(matrix->size < (t_len << 1)) {


=====================================
debian/changelog
=====================================
@@ -1,3 +1,10 @@
+kma (1.2.26-1) unstable; urgency=medium
+
+  * Team upload.
+  * New upstream version
+
+ -- Steffen Moeller <moeller at debian.org>  Tue, 19 May 2020 23:18:54 +0200
+
 kma (1.2.25-1) unstable; urgency=medium
 
   * Team upload.


=====================================
version.h
=====================================
@@ -17,4 +17,4 @@
  * limitations under the License.
 */
 
-#define KMA_VERSION "1.2.25"
+#define KMA_VERSION "1.2.26"



View it on GitLab: https://salsa.debian.org/med-team/kma/-/compare/e76daa8b592d8c867ab1bf912ee5e3ca65a0e076...0b1e5ffa16583366754526428c931df6a6aee376

-- 
View it on GitLab: https://salsa.debian.org/med-team/kma/-/compare/e76daa8b592d8c867ab1bf912ee5e3ca65a0e076...0b1e5ffa16583366754526428c931df6a6aee376
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