[med-svn] [Git][med-team/kma][upstream] New upstream version 1.2.26

[Steffen Möller]

Steffen Möller pushed to branch upstream at Debian Med / kma


Commits:
b75e4f66 by Steffen Moeller at 2020-05-19T23:18:48+02:00
New upstream version 1.2.26
- - - - -


2 changed files:

- assembly.c
- version.h


Changes:

=====================================
assembly.c
=====================================
@@ -275,6 +275,7 @@ void * assemble_KMA_threaded(void *arg) {
 	
 	static volatile int excludeIn[1] = {0}, excludeOut[1] = {0}, excludeMatrix[1] = {0}, mainTemplate = -2, thread_wait = 0;
 	static char *template_name;
+	static HashMap_index *template_index;
 	Assemble_thread *thread = arg;
 	int i, j, t_len, aln_len, start, end, bias, myBias, gaps, pos, spin, sam;
 	int read_score, depthUpdate, bestBaseScore, bestScore, template, asm_len;
@@ -295,7 +296,6 @@ void * assemble_KMA_threaded(void *arg) {
 	AssemInfo *matrix;
 	AlnPoints *points;
 	NWmat *NWmatrices;
-	HashMap_index *template_index;
 	
 	/* get input */
 	template = thread->template;
@@ -319,7 +319,6 @@ void * assemble_KMA_threaded(void *arg) {
 	sam = thread->sam;
 	spin = thread->spin;
 	thread_num = thread->thread_num;
-	template_index = thread->template_index;
 	
 	if(template != -2) {
 		/* all assemblies done, 
@@ -334,6 +333,7 @@ void * assemble_KMA_threaded(void *arg) {
 		/* Allocate assembly arrays */
 		lock(excludeMatrix);
 		template_name = thread->template_name;
+		template_index = thread->template_index;
 		t_len = template_index->len;
 		matrix->len = t_len;
 		if(matrix->size < (t_len << 1)) {


=====================================
version.h
=====================================
@@ -17,4 +17,4 @@
  * limitations under the License.
 */
 
-#define KMA_VERSION "1.2.25"
+#define KMA_VERSION "1.2.26"



View it on GitLab: https://salsa.debian.org/med-team/kma/-/commit/b75e4f66739884b562b8f4f1e3c9589a43b2028e

-- 
View it on GitLab: https://salsa.debian.org/med-team/kma/-/commit/b75e4f66739884b562b8f4f1e3c9589a43b2028e
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