[med-svn] [Git][med-team/drop-seq][master] 3 commits: Provide drop-seq-testdata package

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / drop-seq


Commits:
16048189 by Andreas Tille at 2020-05-22T06:36:12+02:00
Provide drop-seq-testdata package

- - - - -
25e320aa by Andreas Tille at 2020-05-22T06:41:10+02:00
Upload to unstable

- - - - -
a409101c by Andreas Tille at 2020-05-22T06:47:50+02:00
Fix permissions

- - - - -


5 changed files:

- debian/changelog
- debian/control
- + debian/drop-seq-testdata.install
- debian/install → debian/drop-seq-tools.install
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,5 +1,5 @@
-drop-seq (2.3.0+dfsg-1) UNRELEASED; urgency=medium
+drop-seq (2.3.0+dfsg-1) unstable; urgency=medium
 
   * Initial release (Closes: #961237)
 
- -- Andreas Tille <tille at debian.org>  Tue, 19 May 2020 14:42:01 +0200
+ -- Andreas Tille <tille at debian.org>  Fri, 22 May 2020 06:36:53 +0200


=====================================
debian/control
=====================================
@@ -22,7 +22,7 @@ Vcs-Git: https://salsa.debian.org/med-team/drop-seq.git
 Homepage: https://github.com/broadinstitute/Drop-seq/
 
 Package: drop-seq-tools
-Architecture: any
+Architecture: all
 Depends: ${java:Depends},
          ${misc:Depends},
          default-jre | java-runtime,
@@ -38,3 +38,14 @@ Description: analyzing Drop-seq data
  This software provide for core computational analysis of Drop-seq data,
  which shows you how to transform raw sequence data into an expression
  measurement for each gene in each individual cell.
+
+Package: drop-seq-testdata
+Architecture: all
+Depends: ${misc:Depends}
+Description: analyzing Drop-seq data (testdata)
+ This software provide for core computational analysis of Drop-seq data,
+ which shows you how to transform raw sequence data into an expression
+ measurement for each gene in each individual cell.
+ .
+ This package provides the test data set included into the upstream
+ source.


=====================================
debian/drop-seq-testdata.install
=====================================
@@ -0,0 +1 @@
+testdata/*	usr/share/drop-seq


=====================================
debian/install → debian/drop-seq-tools.install
=====================================


=====================================
debian/rules
=====================================
@@ -4,15 +4,6 @@
 export LC_ALL=C.UTF-8
 
 include /usr/share/dpkg/default.mk
-# this provides:
-# DEB_SOURCE: the source package name
-# DEB_VERSION: the full version of the package (epoch + upstream vers. + revision)
-# DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision
-# DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch
-# DEB_VERSION_UPSTREAM: the package's upstream version
-# DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog
-# SOURCE_DATE_EPOCH: the source release date as seconds since the epoch, as
-#                    specified by <https://reproducible-builds.org/specs/source-date-epoch/>
 
 # for hardening you might like to uncomment this:
 # export DEB_BUILD_MAINT_OPTIONS=hardening=+all
@@ -22,8 +13,6 @@ JAVA_HOME  := /usr/lib/jvm/default-java
 %:
 	dh $@ --with javahelper
 
-### When overriding auto_test make sure DEB_BUILD_OPTIONS will be respected
-#override_dh_auto_test:
-#ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
-#	do_stuff_for_testing
-#endif
+override_dh_fixperms:
+	dh_fixperms
+	find debian/drop-seq-testdata/usr/share -type f -exec chmod -x \{\} \;



View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/9e90c066e510da3721a8b90f229f00c5730195ca...a409101c096f5260ee948d1387c45dc33bc0180c

-- 
View it on GitLab: https://salsa.debian.org/med-team/drop-seq/-/compare/9e90c066e510da3721a8b90f229f00c5730195ca...a409101c096f5260ee948d1387c45dc33bc0180c
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