Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
498a6b3f by Andreas Tille at 2020-05-22T13:45:22+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,97 +1,82 @@
-Last-Update: Fri, 22 May 2020 01:42:04 +0000
+Last-Update: Fri, 22 May 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 191 | {covid-19,imaging} |
- orthanc | 100 | {covid-19,practice,imaging} |
- gdcm | 52 | {imaging-dev} |
- orthanc-wsi | 48 | {his,practice,laboratory,oncology,imaging,covid-19} |
- htsjdk | 32 | {bio-dev} |
- dicom3tools | 29 | {imaging} |
+ dcmtk | 194 | {covid-19,imaging} |
+ orthanc | 101 | {imaging,practice,covid-19} |
+ gdcm | 54 | {imaging-dev} |
+ orthanc-wsi | 48 | {imaging,covid-19,laboratory,practice,oncology,his} |
+ htsjdk | 31 | {bio-dev} |
+ dicom3tools | 30 | {imaging} |
dicomscope | 28 | {imaging} |
dcm2niix | 22 | {imaging} |
- gdcm | 18 | {covid-19,imaging} |
- minc-tools | 18 | {imaging} |
+ gdcm | 19 | {imaging,covid-19} |
+ minc-tools | 19 | {imaging} |
gnumed-server | 17 | {practice,covid-19} |
pixelmed | 17 | {imaging} |
insighttoolkit4 | 16 | {imaging-dev} |
- adun.app | 15 | {bio} |
- invesalius | 15 | {imaging} |
- ngs-sdk | 14 | {bio-dev} |
+ invesalius | 16 | {imaging} |
+ adun.app | 14 | {bio} |
plastimatch | 14 | {imaging} |
- stacks | 14 | {bio} |
+ vtk-dicom | 14 | {imaging} |
+ ngs-sdk | 13 | {bio-dev} |
openslide | 13 | {imaging} |
- vtk-dicom | 13 | {imaging} |
- king | 12 | {imaging,typesetting} |
+ stacks | 13 | {bio} |
+ king | 12 | {typesetting,imaging} |
gdcm | 11 | {imaging-dev} |
- librg-utils-perl | 11 | {bio} |
biojava-live | 10 | {bio-dev} |
biosig4c++ | 10 | {imaging,physics} |
jebl2 | 10 | {bio-dev} |
+ librg-utils-perl | 10 | {bio} |
obitools | 10 | {bio} |
ea-utils | 9 | {bio} |
- fastlink | 9 | {cloud,bio} |
ngs-sdk | 9 | {bio-dev} |
paml | 9 | {bio} |
- staden | 9 | {bio} |
alter-sequence-alignment | 8 | {bio} |
- arden | 8 | {cloud,bio} |
- indelible | 8 | {bio} |
+ arden | 8 | {bio,cloud} |
+ cgview | 8 | {bio} |
+ fastlink | 8 | {bio,cloud} |
maqview | 8 | {bio} |
- melting | 8 | {cloud,bio} |
mipe | 8 | {bio,cloud} |
- ncbi-seg | 8 | {bio} |
- norsp | 8 | {bio} |
- piler | 8 | {bio} |
+ radiant | 8 | {bio} |
+ staden | 8 | {bio} |
abacas | 7 | {bio,covid-19} |
- ampliconnoise | 7 | {bio,cloud} |
- anfo | 7 | {bio,cloud} |
+ anfo | 7 | {cloud,bio} |
biomaj3-cli | 7 | {cloud} |
bio-rainbow | 7 | {bio} |
bio-tradis | 7 | {bio-dev,bio} |
bppsuite | 7 | {bio} |
- cgview | 7 | {bio} |
dazzdb | 7 | {bio} |
- edtsurf | 7 | {bio} |
embassy-domainatrix | 7 | {cloud,bio} |
embassy-domalign | 7 | {cloud,bio} |
+ indelible | 7 | {bio} |
+ melting | 7 | {bio,cloud} |
+ ncbi-seg | 7 | {bio} |
+ norsp | 7 | {bio} |
orthanc-webviewer | 7 | {imaging} |
- radiant | 7 | {bio} |
+ piler | 7 | {bio} |
+ psychopy | 7 | {psychology} |
seer | 7 | {bio} |
- sibsim4 | 7 | {bio,cloud} |
- sigma-align | 7 | {cloud,bio-phylogeny,bio} |
transrate-tools | 7 | {bio} |
transtermhp | 7 | {bio} |
+ ampliconnoise | 6 | {cloud,bio} |
beast-mcmc | 6 | {bio,bio-phylogeny} |
bitseq | 6 | {bio} |
daligner | 6 | {bio,bio-ngs} |
ecopcr | 6 | {bio} |
+ edtsurf | 6 | {bio} |
embassy-domsearch | 6 | {cloud,bio} |
gasic | 6 | {bio,cloud} |
gatb-core | 6 | {bio} |
- ipig | 6 | {bio} |
- jellyfish1 | 6 | {bio} |
- king-probe | 6 | {bio} |
libminc | 6 | {imaging-dev} |
- mapsembler2 | 6 | {cloud,bio} |
- neobio | 6 | {cloud,bio} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
orthanc-mysql | 6 | {imaging} |
- paraclu | 6 | {bio,cloud} |
phast | 6 | {bio} |
- phyutility | 6 | {bio,cloud} |
- predictprotein | 6 | {bio} |
- probabel | 6 | {bio,cloud} |
- psychopy | 6 | {psychology} |
pymia | 6 | {imaging-dev} |
- repeatmasker-recon | 6 | {bio} |
- saint | 6 | {bio} |
- salmon | 6 | {bio,covid-19} |
seqtools | 6 | {bio} |
- sickle | 6 | {bio} |
- squizz | 6 | {cloud,bio} |
- treeview | 6 | {bio,bio-phylogeny} |
- zalign | 6 | {cloud,bio} |
+ sibsim4 | 6 | {bio,cloud} |
+ sigma-align | 6 | {cloud,bio,bio-phylogeny} |
+ zalign | 6 | {bio,cloud} |
assemblytics | 5 | {bio} |
baitfisher | 5 | {bio} |
bandage | 5 | {bio} |
@@ -99,138 +84,150 @@ Last-Update: Fri, 22 May 2020 01:42:04 +0000
beads | 5 | {bio} |
biomaj3-daemon | 5 | {bio} |
brig | 5 | {bio} |
- clonalframeml | 5 | {bio,covid-19} |
+ clonalframeml | 5 | {covid-19,bio} |
cluster3 | 5 | {bio} |
dascrubber | 5 | {bio} |
dindel | 5 | {bio} |
estscan | 5 | {bio} |
- fastml | 5 | {bio} |
freebayes | 5 | {covid-19,bio} |
- fsm-lite | 5 | {bio} |
harvest-tools | 5 | {bio} |
- jmodeltest | 5 | {bio,bio-phylogeny} |
+ ipig | 5 | {bio} |
+ jellyfish1 | 5 | {bio} |
+ king-probe | 5 | {bio} |
lagan | 5 | {bio} |
libncl | 5 | {bio} |
- libpal-java | 5 | {bio-dev} |
- microbegps | 5 | {bio} |
+ mapsembler2 | 5 | {cloud,bio} |
mrs | 5 | {bio} |
murasaki | 5 | {bio} |
+ neobio | 5 | {bio,cloud} |
nutsqlite | 5 | {tools} |
orthanc-postgresql | 5 | {imaging} |
- perm | 5 | {bio,cloud} |
- phybin | 5 | {bio} |
- placnet | 5 | {bio} |
- poretools | 5 | {bio} |
+ paraclu | 5 | {bio,cloud} |
+ phyutility | 5 | {bio,cloud} |
+ predictprotein | 5 | {bio} |
prime-phylo | 5 | {cloud,bio} |
- proalign | 5 | {bio-phylogeny,bio} |
+ probabel | 5 | {cloud,bio} |
pscan-tfbs | 5 | {bio} |
- rambo-k | 5 | {bio} |
- rdp-alignment | 5 | {bio} |
- rdp-readseq | 5 | {bio} |
- roguenarok | 5 | {bio} |
- runcircos-gui | 5 | {bio} |
- scythe | 5 | {bio} |
- segemehl | 5 | {bio} |
+ repeatmasker-recon | 5 | {bio} |
+ saint | 5 | {bio} |
+ salmon | 5 | {covid-19,bio} |
seqtools | 5 | {bio} |
- sga | 5 | {bio} |
+ sickle | 5 | {bio} |
snap-aligner | 5 | {bio} |
- soapaligner | 5 | {bio} |
soapsnp | 5 | {bio} |
- sprai | 5 | {bio} |
- spread-phy | 5 | {bio,bio-phylogeny} |
+ squizz | 5 | {cloud,bio} |
+ treeview | 5 | {bio,bio-phylogeny} |
beast2-mcmc | 4 | {bio} |
- blasr | 4 | {bio-ngs,bio} |
canu | 4 | {bio} |
- centrifuge | 4 | {bio,covid-19} |
+ centrifuge | 4 | {covid-19,bio} |
clonalorigin | 4 | {bio} |
delly | 4 | {bio,covid-19} |
dicompyler | 4 | {oncology} |
- dwgsim | 4 | {bio} |
elastix | 4 | {imaging} |
- elph | 4 | {bio} |
- ghmm | 4 | {bio} |
- hinge | 4 | {bio} |
- jaligner | 4 | {bio} |
- lamarc | 4 | {bio} |
+ fastml | 4 | {bio} |
+ fsm-lite | 4 | {bio} |
+ jmodeltest | 4 | {bio-phylogeny,bio} |
libdivsufsort | 4 | {bio-dev} |
libgff | 4 | {bio-dev} |
- librdp-taxonomy-tree-java | 4 | {bio-dev} |
+ libpal-java | 4 | {bio-dev} |
libsbml | 4 | {bio-dev} |
- libsmithwaterman | 4 | {bio} |
- maffilter | 4 | {bio} |
- mauve-aligner | 4 | {bio} |
- mlv-smile | 4 | {bio,cloud} |
- mptp | 4 | {bio} |
- patman | 4 | {bio} |
- phipack | 4 | {bio} |
- prottest | 4 | {bio-phylogeny,bio} |
+ microbegps | 4 | {bio} |
+ perm | 4 | {cloud,bio} |
+ phybin | 4 | {bio} |
+ placnet | 4 | {bio} |
+ poretools | 4 | {bio} |
+ proalign | 4 | {bio,bio-phylogeny} |
pscan-chip | 4 | {bio} |
- qcumber | 4 | {bio} |
quorum | 4 | {bio} |
- rdp-classifier | 4 | {bio} |
- rtax | 4 | {cloud,bio} |
- scrm | 4 | {bio} |
- seqmagick | 4 | {bio,covid-19} |
- seqsero | 4 | {bio} |
- spaced | 4 | {bio} |
- suitename | 4 | {bio} |
- surankco | 4 | {bio} |
- tnseq-transit | 4 | {covid-19,bio} |
+ rambo-k | 4 | {bio} |
+ rdp-alignment | 4 | {bio} |
+ rdp-readseq | 4 | {bio} |
+ roguenarok | 4 | {bio} |
+ runcircos-gui | 4 | {bio} |
+ scythe | 4 | {bio} |
+ segemehl | 4 | {bio} |
+ sga | 4 | {bio} |
+ soapaligner | 4 | {bio} |
+ sprai | 4 | {bio} |
+ spread-phy | 4 | {bio,bio-phylogeny} |
tracetuner | 4 | {bio} |
- velvetoptimiser | 4 | {bio} |
- vsearch | 4 | {bio,covid-19} |
yaha | 4 | {bio} |
+ blasr | 3 | {bio-ngs,bio} |
cufflinks | 3 | {cloud,bio} |
- logol | 3 | {bio} |
- metaphlan2 | 3 | {bio} |
- mhap | 3 | {bio,bio-ngs} |
- nanook | 3 | {bio} |
- pal2nal | 3 | {bio} |
+ dwgsim | 3 | {bio} |
+ elph | 3 | {bio} |
+ ghmm | 3 | {bio} |
+ hinge | 3 | {bio} |
+ jaligner | 3 | {bio} |
+ lamarc | 3 | {bio} |
+ librdp-taxonomy-tree-java | 3 | {bio-dev} |
+ libsmithwaterman | 3 | {bio} |
+ maffilter | 3 | {bio} |
+ mauve-aligner | 3 | {bio} |
+ mlv-smile | 3 | {cloud,bio} |
+ mptp | 3 | {bio} |
+ patman | 3 | {bio} |
pbdagcon | 3 | {bio} |
- pilon | 3 | {bio} |
- plasmidseeker | 3 | {bio} |
+ phipack | 3 | {bio} |
+ prottest | 3 | {bio,bio-phylogeny} |
+ qcumber | 3 | {bio} |
qrisk2 | 3 | {practice} |
- rampler | 3 | {bio} |
+ rdp-classifier | 3 | {bio} |
relion | 3 | {bio} |
- samblaster | 3 | {bio,covid-19} |
+ rtax | 3 | {cloud,bio} |
+ scrm | 3 | {bio} |
+ seqmagick | 3 | {covid-19,bio} |
+ seqsero | 3 | {bio} |
+ spaced | 3 | {bio} |
srf | 3 | {bio-dev} |
- sweed | 3 | {bio} |
- trace2dbest | 3 | {bio} |
- tvc | 3 | {bio} |
+ suitename | 3 | {bio} |
+ surankco | 3 | {bio} |
+ tnseq-transit | 3 | {bio,covid-19} |
+ velvetoptimiser | 3 | {bio} |
+ vsearch | 3 | {bio,covid-19} |
atropos | 2 | {bio} |
- biosig4c++ | 2 | {imaging-dev,physics} |
biosig4c++ | 2 | {physics,imaging-dev} |
getdata | 2 | {bio} |
kma | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libctapimkt | 2 | {practice} |
libvistaio | 2 | {imaging-dev} |
+ logol | 2 | {bio} |
mencal | 2 | {tools} |
+ metaphlan2 | 2 | {bio} |
+ mhap | 2 | {bio-ngs,bio} |
+ nanook | 2 | {bio} |
openslide | 2 | {imaging-dev} |
oscar | 2 | {practice,data,tools} |
+ pal2nal | 2 | {bio} |
+ pilon | 2 | {bio} |
+ plasmidseeker | 2 | {bio} |
+ rampler | 2 | {bio} |
+ samblaster | 2 | {covid-19,bio} |
samtools-legacy | 2 | {bio-dev} |
seqan | 2 | {bio-dev} |
- stringtie | 2 | {covid-19,bio} |
+ stringtie | 2 | {bio,covid-19} |
+ sweed | 2 | {bio} |
+ trace2dbest | 2 | {bio} |
+ tvc | 2 | {bio} |
acedb | 1 | {cloud,bio} |
- biobambam2 | 1 | {bio,covid-19,bio-dev} |
+ biobambam2 | 1 | {bio-dev,covid-19,bio} |
blimps | 1 | {bio} |
busco | 1 | {bio,covid-19} |
- embassy-phylip | 1 | {cloud,bio} |
+ embassy-phylip | 1 | {bio,cloud} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
kmerresistance | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
- libmaus2 | 1 | {covid-19,bio-dev} |
+ libmaus2 | 1 | {bio-dev,covid-19} |
libmialm | 1 | {imaging-dev} |
libsmithwaterman | 1 | {bio-dev} |
libxdf | 1 | {imaging-dev} |
ncbi-vdb | 1 | {bio-dev} |
- ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
- python-py2bit | 1 | {bio-dev,bio} |
- python-scitrack | 1 | {covid-19} |
+ python-py2bit | 1 | {bio,bio-dev} |
relion | 1 | {bio} |
sift | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
@@ -275,10 +272,11 @@ Last-Update: Fri, 22 May 2020 01:42:04 +0000
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {covid-19,bio-dev} |
+ milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
multiqc | 0 | {bio,covid-19} |
murasaki | 0 | {bio} |
+ ngs-sdk | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
@@ -286,6 +284,7 @@ Last-Update: Fri, 22 May 2020 01:42:04 +0000
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
pycoqc | 0 | {bio,covid-19} |
+ python-scitrack | 0 | {covid-19} |
relion | 0 | {bio-dev} |
relion | 0 | {bio} |
sambamba | 0 | {bio} |
@@ -294,10 +293,10 @@ Last-Update: Fri, 22 May 2020 01:42:04 +0000
skewer | 0 | {bio} |
smrtanalysis | 0 | {bio,covid-19} |
solvate | 0 | {bio} |
- thesias | 0 | {covid-19,bio} |
+ thesias | 0 | {bio,covid-19} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
bustools | -1 | {covid-19,bio} |
-(326 rows)
+(325 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/498a6b3f545c8cb2e84cb54b0731f35781dbf9eb
--
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