[med-svn] [Git][med-team/libsmithwaterman][master] 3 commits: Add autopkgtests

[Pranav Ballaney]

Pranav Ballaney pushed to branch master at Debian Med / libsmithwaterman


Commits:
c307920b by Pranav Ballaney at 2020-05-22T20:05:57+05:30
Add autopkgtests

- - - - -
5683e276 by Pranav Ballaney at 2020-05-22T20:06:05+05:30
Install docs

- - - - -
e6c843fd by Pranav Ballaney at 2020-05-22T20:06:17+05:30
Update changelog

- - - - -


6 changed files:

- + debian/README.test
- debian/changelog
- + debian/smithwaterman.docs
- + debian/smithwaterman.examples
- + debian/tests/control
- + debian/tests/run-unit-test


Changes:

=====================================
debian/README.test
=====================================
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+This package can be tested by running the provided test:
+
+    sh run-unit-test
+
+in order to confirm its integrity.


=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+libsmithwaterman (0.0+git20160702.2610e25-8) UNRELEASED; urgency=medium
+
+  * Add autopkgtests
+
+ -- Pranav Ballaney <ballaneypranav at gmail.com>  Fri, 22 May 2020 20:03:59 +0530
+
 libsmithwaterman (0.0+git20160702.2610e25-7) unstable; urgency=medium
 
   * Team upload


=====================================
debian/smithwaterman.docs
=====================================
@@ -0,0 +1,2 @@
+debian/README.test
+debian/tests/run-unit-test
\ No newline at end of file


=====================================
debian/smithwaterman.examples
=====================================
@@ -0,0 +1 @@
+examples.txt
\ No newline at end of file


=====================================
debian/tests/control
=====================================
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @
+Restrictions: allow-stderr


=====================================
debian/tests/run-unit-test
=====================================
@@ -0,0 +1,27 @@
+#!/bin/bash
+set -e
+
+pkg=smithwaterman
+
+export LC_ALL=C.UTF-8
+if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
+  AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
+  # Double quote below to expand the temporary directory variable now versus
+  # later is on purpose.
+  # shellcheck disable=SC2064
+  trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
+fi
+
+cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
+
+cd "${AUTOPKGTEST_TMP}"
+
+gunzip -r *
+
+input="examples.txt"
+while IFS= read -r line
+do 
+  echo smithwaterman -p -R $line >> commands.sh
+done < "$input"
+
+sh commands.sh
\ No newline at end of file



View it on GitLab: https://salsa.debian.org/med-team/libsmithwaterman/-/compare/685a14140756987b6509d55db90293d16070be5c...e6c843fd5ebdfd83e024454ed041d8f94bf3c792

-- 
View it on GitLab: https://salsa.debian.org/med-team/libsmithwaterman/-/compare/685a14140756987b6509d55db90293d16070be5c...e6c843fd5ebdfd83e024454ed041d8f94bf3c792
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20200522/d95dc8a0/attachment-0001.html>