[med-svn] [Git][med-team/megahit][master] Well done!

[Steffen Möller]

Steffen Möller pushed to branch master at Debian Med / megahit


Commits:
2e09cf8b by Steffen Moeller at 2020-05-24T16:35:56+02:00
Well done!

I had sadly seen this package only when I wanted to claim my
space on salsa.d.o/med-team. Have now also added it to our blends
page and merged what I had in surplus packaging.

- - - - -


4 changed files:

- + debian/TODO
- debian/control
- debian/copyright
- debian/upstream/metadata


Changes:

=====================================
debian/TODO
=====================================
@@ -0,0 +1 @@
+ * xxHash is distributed with Debian - consider investing into repacking


=====================================
debian/control
=====================================
@@ -26,3 +26,6 @@ Description: ultra-fast and memory-efficient meta-genome assembler
  Megahit is an ultra-fast and memory-efficient NGS assembler. It is
  optimized for metagenomes, but also works well on generic single genome
  assembly (small or mammalian size) and single-cell assembly.
+ .
+ The software was praised in a Briefings in Bioinformatics 5/2020
+ review (DOI: 10.1093/bib/bbaa085).


=====================================
debian/copyright
=====================================
@@ -1,5 +1,5 @@
 Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Upstream-Name: megahit
+Upstream-Name: MEGAHIT
 Source: https://github.com/voutcn/megahit
 
 Files: *
@@ -36,6 +36,9 @@ License: GPL-3+
 
 Files: debian/*
 Copyright: 2019 Shayan Doust <hello at shayandoust.me>
+                with contributions by
+                Andreas Tille <tille at debian.org>
+                Steffen Moeller <moeller at debian.org>
 License: GPL-3+
 
 License: BSD-2-clause


=====================================
debian/upstream/metadata
=====================================
@@ -1,14 +1,36 @@
 Reference:
-  Author: >
+ - Author: >
     Dinghua Li and Chi-Man Liu and Ruibang Luo and Kunihiko Sadakane and
     Tak-Wah Lam
-  Title: >
+   Title: >
     MEGAHIT: an ultra-fast single-node solution for large and complex
     metagenomics assembly via succinct de Bruijn graph
-  Year: 2015
-  Volume: 31
-  Pages: 1674-1676
-  DOI: 10.1093/bioinformatics/btv033
-  PMID: 25609793
-  URL: https://www.ncbi.nlm.nih.gov/pubmed/25609793
+   Year: 2015
+   Volume: 31
+   Pages: 1674-1676
+   DOI: 10.1093/bioinformatics/btv033
+   PMID: 25609793
+   URL: https://www.ncbi.nlm.nih.gov/pubmed/25609793
+ - Author: >
+    Li, D. and Luo, R. and Liu, C.M. and Leung, C.M. and Ting, H.F. and
+    Sadakane, K. and Yamashita, H. and Lam, T.W.
+   Year: 2016
+   Month: 6
+   Title: >
+    MEGAHIT v1.0: A Fast and Scalable Metagenome Assembler driven by
+    Advanced Methodologies and Community Practices.
+   Journal: Methods
+   Volume: 102
+   Pages: 3-11
+   DOI: 10.1016/j.ymeth.2016.02.020
+   PMID: 27012178
 Other-References: https://github.com/voutcn/megahit
+Registry:
+ - Name: bio.tools
+   Entry: megahit
+ - Name: conda:bioconda
+   Entry: megahit
+ - Name: OMICtools
+   Entry: OMICS_07234
+ - Name: SciCrunch
+   Entry: NA



View it on GitLab: https://salsa.debian.org/med-team/megahit/-/commit/2e09cf8b627e400cbad33be7ce80d938ae6f574c

-- 
View it on GitLab: https://salsa.debian.org/med-team/megahit/-/commit/2e09cf8b627e400cbad33be7ce80d938ae6f574c
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