[med-svn] [Git][med-team/tiddit][master] Make sure bamtools headers will be found

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / tiddit


Commits:
0584c259 by Andreas Tille at 2020-05-25T14:15:23+02:00
Make sure bamtools headers will be found

- - - - -


1 changed file:

- debian/patches/use_debian_packaged_libs.patch


Changes:

=====================================
debian/patches/use_debian_packaged_libs.patch
=====================================
@@ -11,12 +11,21 @@
  
  
  # source code
-@@ -28,7 +28,7 @@ file(GLOB TIDDIT_FILES
+@@ -28,8 +28,15 @@ file(GLOB TIDDIT_FILES
  )
  
  
 -add_subdirectory(lib)
+-
 +# add_subdirectory(lib)
- 
++find_path(bamtools_INCLUDE_DIR api/BamReader.h
++                  HINTS ENV BAMTOOLS_INC
++                  PATH_SUFFIXES bamtools
++         )
++set(bamtools_INCLUDE_DIRS ${bamtools_INCLUDE_DIR})
++# the code above does not seem to have the wanted effect
++include_directories(/usr/include/bamtools)
++find_library(BAMTOOLS_LIBRARIES libbamtools.a)
  
  # TIDDIT executable
+ add_executable(TIDDIT ${TIDDIT_FILES})



View it on GitLab: https://salsa.debian.org/med-team/tiddit/-/commit/0584c259b1d017b0e541fdb4e36f6d2a38951b9e

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View it on GitLab: https://salsa.debian.org/med-team/tiddit/-/commit/0584c259b1d017b0e541fdb4e36f6d2a38951b9e
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