Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
85f1cdad by Andreas Tille at 2020-05-25T13:53:55+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,50 +1,51 @@
-Last-Update: Mon, 25 May 2020 01:42:04 +0000
+Last-Update: Mon, 25 May 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 191 | {covid-19,imaging} |
- orthanc | 98 | {imaging,practice,covid-19} |
+ dcmtk | 188 | {covid-19,imaging} |
+ orthanc | 97 | {practice,covid-19,imaging} |
gdcm | 56 | {imaging-dev} |
- orthanc-wsi | 48 | {imaging,covid-19,laboratory,practice,oncology,his} |
- htsjdk | 32 | {bio-dev} |
- dicom3tools | 29 | {imaging} |
- dicomscope | 26 | {imaging} |
+ orthanc-wsi | 46 | {laboratory,covid-19,imaging,oncology,his,practice} |
+ htsjdk | 33 | {bio-dev} |
+ dicom3tools | 28 | {imaging} |
+ dicomscope | 27 | {imaging} |
dcm2niix | 25 | {imaging} |
- minc-tools | 19 | {imaging} |
- gdcm | 18 | {imaging,covid-19} |
- insighttoolkit4 | 18 | {imaging-dev} |
- gnumed-server | 17 | {practice,covid-19} |
- pixelmed | 17 | {imaging} |
+ minc-tools | 18 | {imaging} |
+ gnumed-server | 17 | {covid-19,practice} |
+ insighttoolkit4 | 17 | {imaging-dev} |
+ gdcm | 16 | {covid-19,imaging} |
invesalius | 16 | {imaging} |
- plastimatch | 15 | {imaging} |
+ pixelmed | 15 | {imaging} |
adun.app | 14 | {bio} |
vtk-dicom | 14 | {imaging} |
ngs-sdk | 13 | {bio-dev} |
- openslide | 13 | {imaging} |
stacks | 13 | {bio} |
gdcm | 12 | {imaging-dev} |
- king | 12 | {typesetting,imaging} |
- obitools | 11 | {bio} |
+ obitools | 12 | {bio} |
+ plastimatch | 12 | {imaging} |
+ king | 11 | {imaging,typesetting} |
+ openslide | 11 | {imaging} |
biojava-live | 10 | {bio-dev} |
- biosig4c++ | 10 | {imaging,physics} |
jebl2 | 10 | {bio-dev} |
librg-utils-perl | 10 | {bio} |
+ biosig4c++ | 9 | {physics,imaging} |
ea-utils | 9 | {bio} |
ngs-sdk | 9 | {bio-dev} |
paml | 9 | {bio} |
+ psychopy | 9 | {psychology} |
alter-sequence-alignment | 8 | {bio} |
arden | 8 | {bio,cloud} |
cgview | 8 | {bio} |
- fastlink | 8 | {bio,cloud} |
+ fastlink | 8 | {cloud,bio} |
maqview | 8 | {bio} |
- mipe | 8 | {bio,cloud} |
+ mipe | 8 | {cloud,bio} |
radiant | 8 | {bio} |
staden | 8 | {bio} |
- abacas | 7 | {bio,covid-19} |
- anfo | 7 | {cloud,bio} |
+ abacas | 7 | {covid-19,bio} |
+ anfo | 7 | {bio,cloud} |
biomaj3-cli | 7 | {cloud} |
bio-rainbow | 7 | {bio} |
- bio-tradis | 7 | {bio-dev,bio} |
+ bio-tradis | 7 | {bio,bio-dev} |
bppsuite | 7 | {bio} |
dazzdb | 7 | {bio} |
embassy-domainatrix | 7 | {cloud,bio} |
@@ -55,42 +56,42 @@ Last-Update: Mon, 25 May 2020 01:42:04 +0000
norsp | 7 | {bio} |
orthanc-webviewer | 7 | {imaging} |
piler | 7 | {bio} |
- psychopy | 7 | {psychology} |
seer | 7 | {bio} |
transrate-tools | 7 | {bio} |
transtermhp | 7 | {bio} |
- ampliconnoise | 6 | {cloud,bio} |
- beast-mcmc | 6 | {bio,bio-phylogeny} |
+ ampliconnoise | 6 | {bio,cloud} |
+ beast-mcmc | 6 | {bio-phylogeny,bio} |
bitseq | 6 | {bio} |
+ cluster3 | 6 | {bio} |
daligner | 6 | {bio,bio-ngs} |
ecopcr | 6 | {bio} |
edtsurf | 6 | {bio} |
- embassy-domsearch | 6 | {cloud,bio} |
+ embassy-domsearch | 6 | {bio,cloud} |
gatb-core | 6 | {bio} |
melting | 6 | {bio,cloud} |
+ mrs | 6 | {bio} |
nutsqlite | 6 | {tools} |
orthanc-dicomweb | 6 | {imaging,covid-19} |
orthanc-mysql | 6 | {imaging} |
phast | 6 | {bio} |
pymia | 6 | {imaging-dev} |
seqtools | 6 | {bio} |
- sibsim4 | 6 | {bio,cloud} |
- sigma-align | 6 | {cloud,bio,bio-phylogeny} |
- zalign | 6 | {bio,cloud} |
+ sibsim4 | 6 | {cloud,bio} |
+ sickle | 6 | {bio} |
+ sigma-align | 6 | {bio,cloud,bio-phylogeny} |
+ zalign | 6 | {cloud,bio} |
assemblytics | 5 | {bio} |
baitfisher | 5 | {bio} |
bandage | 5 | {bio} |
- bart-view | 5 | {imaging} |
beads | 5 | {bio} |
biomaj3-daemon | 5 | {bio} |
brig | 5 | {bio} |
- clonalframeml | 5 | {covid-19,bio} |
- cluster3 | 5 | {bio} |
+ clonalframeml | 5 | {bio,covid-19} |
dascrubber | 5 | {bio} |
dicompyler | 5 | {oncology} |
dindel | 5 | {bio} |
estscan | 5 | {bio} |
- freebayes | 5 | {covid-19,bio} |
+ freebayes | 5 | {bio,covid-19} |
gasic | 5 | {bio,cloud} |
harvest-tools | 5 | {bio} |
ipig | 5 | {bio} |
@@ -98,27 +99,27 @@ Last-Update: Mon, 25 May 2020 01:42:04 +0000
king-probe | 5 | {bio} |
lagan | 5 | {bio} |
libncl | 5 | {bio} |
- mapsembler2 | 5 | {cloud,bio} |
- mrs | 5 | {bio} |
+ mapsembler2 | 5 | {bio,cloud} |
murasaki | 5 | {bio} |
- neobio | 5 | {bio,cloud} |
+ neobio | 5 | {cloud,bio} |
orthanc-postgresql | 5 | {imaging} |
paraclu | 5 | {bio,cloud} |
- phyutility | 5 | {bio,cloud} |
+ phyutility | 5 | {cloud,bio} |
predictprotein | 5 | {bio} |
- prime-phylo | 5 | {cloud,bio} |
+ prime-phylo | 5 | {bio,cloud} |
probabel | 5 | {cloud,bio} |
pscan-tfbs | 5 | {bio} |
repeatmasker-recon | 5 | {bio} |
saint | 5 | {bio} |
- salmon | 5 | {covid-19,bio} |
+ salmon | 5 | {bio,covid-19} |
seqtools | 5 | {bio} |
- sickle | 5 | {bio} |
snap-aligner | 5 | {bio} |
soapsnp | 5 | {bio} |
- squizz | 5 | {cloud,bio} |
+ squizz | 5 | {bio,cloud} |
treeview | 5 | {bio,bio-phylogeny} |
+ bart-view | 4 | {imaging} |
beast2-mcmc | 4 | {bio} |
+ blasr | 4 | {bio-ngs,bio} |
canu | 4 | {bio} |
centrifuge | 4 | {covid-19,bio} |
clonalorigin | 4 | {bio} |
@@ -128,9 +129,7 @@ Last-Update: Mon, 25 May 2020 01:42:04 +0000
fsm-lite | 4 | {bio} |
jmodeltest | 4 | {bio-phylogeny,bio} |
libdivsufsort | 4 | {bio-dev} |
- libgff | 4 | {bio-dev} |
libpal-java | 4 | {bio-dev} |
- libsbml | 4 | {bio-dev} |
microbegps | 4 | {bio} |
perm | 4 | {cloud,bio} |
phybin | 4 | {bio} |
@@ -141,22 +140,22 @@ Last-Update: Mon, 25 May 2020 01:42:04 +0000
rdp-alignment | 4 | {bio} |
rdp-readseq | 4 | {bio} |
roguenarok | 4 | {bio} |
+ rtax | 4 | {cloud,bio} |
runcircos-gui | 4 | {bio} |
scythe | 4 | {bio} |
segemehl | 4 | {bio} |
sga | 4 | {bio} |
- soapaligner | 4 | {bio} |
sprai | 4 | {bio} |
spread-phy | 4 | {bio,bio-phylogeny} |
tracetuner | 4 | {bio} |
yaha | 4 | {bio} |
- blasr | 3 | {bio-ngs,bio} |
dwgsim | 3 | {bio} |
elph | 3 | {bio} |
ghmm | 3 | {bio} |
hinge | 3 | {bio} |
jaligner | 3 | {bio} |
lamarc | 3 | {bio} |
+ libgff | 3 | {bio-dev} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
maffilter | 3 | {bio} |
mauve-aligner | 3 | {bio} |
@@ -166,18 +165,17 @@ Last-Update: Mon, 25 May 2020 01:42:04 +0000
pbdagcon | 3 | {bio} |
phipack | 3 | {bio} |
poretools | 3 | {bio} |
- prottest | 3 | {bio,bio-phylogeny} |
+ prottest | 3 | {bio-phylogeny,bio} |
qcumber | 3 | {bio} |
qrisk2 | 3 | {practice} |
rambo-k | 3 | {bio} |
rdp-classifier | 3 | {bio} |
relion | 3 | {bio} |
- rtax | 3 | {cloud,bio} |
scrm | 3 | {bio} |
seqmagick | 3 | {covid-19,bio} |
seqsero | 3 | {bio} |
+ soapaligner | 3 | {bio} |
spaced | 3 | {bio} |
- srf | 3 | {bio-dev} |
suitename | 3 | {bio} |
surankco | 3 | {bio} |
tnseq-transit | 3 | {bio,covid-19} |
@@ -185,12 +183,15 @@ Last-Update: Mon, 25 May 2020 01:42:04 +0000
vsearch | 3 | {bio,covid-19} |
atropos | 2 | {bio} |
biosig4c++ | 2 | {physics,imaging-dev} |
+ biosig4c++ | 2 | {imaging-dev,physics} |
+ blimps | 2 | {bio} |
busco | 2 | {bio,covid-19} |
- cufflinks | 2 | {cloud,bio} |
+ cufflinks | 2 | {bio,cloud} |
getdata | 2 | {bio} |
kma | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
libctapimkt | 2 | {practice} |
+ libsbml | 2 | {bio-dev} |
libvistaio | 2 | {imaging-dev} |
logol | 2 | {bio} |
mencal | 2 | {tools} |
@@ -198,7 +199,7 @@ Last-Update: Mon, 25 May 2020 01:42:04 +0000
mhap | 2 | {bio-ngs,bio} |
nanook | 2 | {bio} |
openslide | 2 | {imaging-dev} |
- oscar | 2 | {practice,data,tools} |
+ oscar | 2 | {practice,tools,data} |
pal2nal | 2 | {bio} |
pilon | 2 | {bio} |
plasmidseeker | 2 | {bio} |
@@ -206,34 +207,34 @@ Last-Update: Mon, 25 May 2020 01:42:04 +0000
samblaster | 2 | {covid-19,bio} |
samtools-legacy | 2 | {bio-dev} |
seqan | 2 | {bio-dev} |
- stringtie | 2 | {bio,covid-19} |
+ sift | 2 | {bio} |
+ srf | 2 | {bio-dev} |
+ stringtie | 2 | {covid-19,bio} |
sweed | 2 | {bio} |
trace2dbest | 2 | {bio} |
tvc | 2 | {bio} |
- acedb | 1 | {cloud,bio} |
- biobambam2 | 1 | {bio-dev,covid-19,bio} |
- blimps | 1 | {bio} |
+ acedb | 1 | {bio,cloud} |
+ biobambam2 | 1 | {bio-dev,bio,covid-19} |
embassy-phylip | 1 | {bio,cloud} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
kmerresistance | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
- libmaus2 | 1 | {bio-dev,covid-19} |
+ libmaus2 | 1 | {covid-19,bio-dev} |
libmialm | 1 | {imaging-dev} |
libxdf | 1 | {imaging-dev} |
ncbi-vdb | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
- python-py2bit | 1 | {bio,bio-dev} |
+ python-py2bit | 1 | {bio-dev,bio} |
relion | 1 | {bio} |
- sift | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
- varscan | 1 | {covid-19,bio} |
+ varscan | 1 | {bio,covid-19} |
volpack | 1 | {imaging-dev} |
- augur | 0 | {bio,covid-19} |
+ augur | 0 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
biojava4-live | 0 | {bio-dev} |
@@ -257,7 +258,7 @@ Last-Update: Mon, 25 May 2020 01:42:04 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {covid-19,imaging-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
libmems | 0 | {bio-dev} |
libmuscle | 0 | {bio-dev} |
@@ -270,7 +271,7 @@ Last-Update: Mon, 25 May 2020 01:42:04 +0000
metastudent-data | 0 | {bio} |
metastudent-data-2 | 0 | {bio} |
miaviewit | 0 | {imaging-dev} |
- milib | 0 | {bio-dev,covid-19} |
+ milib | 0 | {covid-19,bio-dev} |
mssstest | 0 | {tools} |
multiqc | 0 | {bio,covid-19} |
murasaki | 0 | {bio} |
@@ -283,8 +284,8 @@ Last-Update: Mon, 25 May 2020 01:42:04 +0000
pilercr | 0 | {bio} |
pycoqc | 0 | {bio,covid-19} |
python-scitrack | 0 | {covid-19} |
- relion | 0 | {bio} |
relion | 0 | {bio-dev} |
+ relion | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
@@ -296,5 +297,5 @@ Last-Update: Mon, 25 May 2020 01:42:04 +0000
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
bustools | -1 | {covid-19,bio} |
-(323 rows)
+(324 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/85f1cdada13ce2a43a95d0f8472eb4745f02e2d5
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/85f1cdada13ce2a43a95d0f8472eb4745f02e2d5
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