Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
8cacf565 by Andreas Tille at 2020-05-26T13:45:37+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,19 +1,19 @@
-Last-Update: Tue, 26 May 2020 01:42:03 +0000
+Last-Update: Tue, 26 May 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 188 | {covid-19,imaging} |
- orthanc | 97 | {practice,covid-19,imaging} |
+ dcmtk | 186 | {covid-19,imaging} |
+ orthanc | 95 | {practice,covid-19,imaging} |
gdcm | 56 | {imaging-dev} |
- orthanc-wsi | 46 | {laboratory,covid-19,imaging,oncology,his,practice} |
+ orthanc-wsi | 46 | {his,imaging,practice,oncology,laboratory,covid-19} |
htsjdk | 33 | {bio-dev} |
- dicom3tools | 28 | {imaging} |
- dicomscope | 27 | {imaging} |
+ dicom3tools | 29 | {imaging} |
+ dicomscope | 26 | {imaging} |
dcm2niix | 25 | {imaging} |
minc-tools | 18 | {imaging} |
+ gdcm | 17 | {covid-19,imaging} |
gnumed-server | 17 | {covid-19,practice} |
insighttoolkit4 | 17 | {imaging-dev} |
- gdcm | 16 | {covid-19,imaging} |
invesalius | 16 | {imaging} |
pixelmed | 15 | {imaging} |
adun.app | 14 | {bio} |
@@ -21,22 +21,22 @@ Last-Update: Tue, 26 May 2020 01:42:03 +0000
ngs-sdk | 13 | {bio-dev} |
stacks | 13 | {bio} |
gdcm | 12 | {imaging-dev} |
+ king | 12 | {typesetting,imaging} |
obitools | 12 | {bio} |
+ openslide | 12 | {imaging} |
plastimatch | 12 | {imaging} |
- king | 11 | {imaging,typesetting} |
- openslide | 11 | {imaging} |
biojava-live | 10 | {bio-dev} |
jebl2 | 10 | {bio-dev} |
librg-utils-perl | 10 | {bio} |
biosig4c++ | 9 | {physics,imaging} |
- ea-utils | 9 | {bio} |
ngs-sdk | 9 | {bio-dev} |
paml | 9 | {bio} |
psychopy | 9 | {psychology} |
alter-sequence-alignment | 8 | {bio} |
arden | 8 | {bio,cloud} |
cgview | 8 | {bio} |
- fastlink | 8 | {cloud,bio} |
+ ea-utils | 8 | {bio} |
+ fastlink | 8 | {bio,cloud} |
maqview | 8 | {bio} |
mipe | 8 | {cloud,bio} |
radiant | 8 | {bio} |
@@ -45,11 +45,11 @@ Last-Update: Tue, 26 May 2020 01:42:03 +0000
anfo | 7 | {bio,cloud} |
biomaj3-cli | 7 | {cloud} |
bio-rainbow | 7 | {bio} |
- bio-tradis | 7 | {bio,bio-dev} |
+ bio-tradis | 7 | {bio-dev,bio} |
bppsuite | 7 | {bio} |
dazzdb | 7 | {bio} |
embassy-domainatrix | 7 | {cloud,bio} |
- embassy-domalign | 7 | {cloud,bio} |
+ embassy-domalign | 7 | {bio,cloud} |
indelible | 7 | {bio} |
libminc | 7 | {imaging-dev} |
ncbi-seg | 7 | {bio} |
@@ -57,16 +57,15 @@ Last-Update: Tue, 26 May 2020 01:42:03 +0000
orthanc-webviewer | 7 | {imaging} |
piler | 7 | {bio} |
seer | 7 | {bio} |
- transrate-tools | 7 | {bio} |
transtermhp | 7 | {bio} |
- ampliconnoise | 6 | {bio,cloud} |
- beast-mcmc | 6 | {bio-phylogeny,bio} |
+ ampliconnoise | 6 | {cloud,bio} |
+ beast-mcmc | 6 | {bio,bio-phylogeny} |
bitseq | 6 | {bio} |
cluster3 | 6 | {bio} |
daligner | 6 | {bio,bio-ngs} |
ecopcr | 6 | {bio} |
edtsurf | 6 | {bio} |
- embassy-domsearch | 6 | {bio,cloud} |
+ embassy-domsearch | 6 | {cloud,bio} |
gatb-core | 6 | {bio} |
melting | 6 | {bio,cloud} |
mrs | 6 | {bio} |
@@ -78,7 +77,7 @@ Last-Update: Tue, 26 May 2020 01:42:03 +0000
seqtools | 6 | {bio} |
sibsim4 | 6 | {cloud,bio} |
sickle | 6 | {bio} |
- sigma-align | 6 | {bio,cloud,bio-phylogeny} |
+ sigma-align | 6 | {bio-phylogeny,cloud,bio} |
zalign | 6 | {cloud,bio} |
assemblytics | 5 | {bio} |
baitfisher | 5 | {bio} |
@@ -86,13 +85,12 @@ Last-Update: Tue, 26 May 2020 01:42:03 +0000
beads | 5 | {bio} |
biomaj3-daemon | 5 | {bio} |
brig | 5 | {bio} |
- clonalframeml | 5 | {bio,covid-19} |
+ clonalframeml | 5 | {covid-19,bio} |
dascrubber | 5 | {bio} |
dicompyler | 5 | {oncology} |
dindel | 5 | {bio} |
estscan | 5 | {bio} |
freebayes | 5 | {bio,covid-19} |
- gasic | 5 | {bio,cloud} |
harvest-tools | 5 | {bio} |
ipig | 5 | {bio} |
jellyfish1 | 5 | {bio} |
@@ -101,37 +99,38 @@ Last-Update: Tue, 26 May 2020 01:42:03 +0000
libncl | 5 | {bio} |
mapsembler2 | 5 | {bio,cloud} |
murasaki | 5 | {bio} |
- neobio | 5 | {cloud,bio} |
+ neobio | 5 | {bio,cloud} |
orthanc-postgresql | 5 | {imaging} |
- paraclu | 5 | {bio,cloud} |
+ paraclu | 5 | {cloud,bio} |
phyutility | 5 | {cloud,bio} |
predictprotein | 5 | {bio} |
- prime-phylo | 5 | {bio,cloud} |
+ prime-phylo | 5 | {cloud,bio} |
probabel | 5 | {cloud,bio} |
pscan-tfbs | 5 | {bio} |
repeatmasker-recon | 5 | {bio} |
saint | 5 | {bio} |
- salmon | 5 | {bio,covid-19} |
+ salmon | 5 | {covid-19,bio} |
seqtools | 5 | {bio} |
snap-aligner | 5 | {bio} |
soapsnp | 5 | {bio} |
- squizz | 5 | {bio,cloud} |
- treeview | 5 | {bio,bio-phylogeny} |
+ squizz | 5 | {cloud,bio} |
+ treeview | 5 | {bio-phylogeny,bio} |
bart-view | 4 | {imaging} |
beast2-mcmc | 4 | {bio} |
blasr | 4 | {bio-ngs,bio} |
canu | 4 | {bio} |
- centrifuge | 4 | {covid-19,bio} |
+ centrifuge | 4 | {bio,covid-19} |
clonalorigin | 4 | {bio} |
- delly | 4 | {bio,covid-19} |
+ delly | 4 | {covid-19,bio} |
elastix | 4 | {imaging} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
- jmodeltest | 4 | {bio-phylogeny,bio} |
+ gasic | 4 | {cloud,bio} |
+ jmodeltest | 4 | {bio,bio-phylogeny} |
libdivsufsort | 4 | {bio-dev} |
libpal-java | 4 | {bio-dev} |
microbegps | 4 | {bio} |
- perm | 4 | {cloud,bio} |
+ perm | 4 | {bio,cloud} |
phybin | 4 | {bio} |
placnet | 4 | {bio} |
proalign | 4 | {bio,bio-phylogeny} |
@@ -146,8 +145,9 @@ Last-Update: Tue, 26 May 2020 01:42:03 +0000
segemehl | 4 | {bio} |
sga | 4 | {bio} |
sprai | 4 | {bio} |
- spread-phy | 4 | {bio,bio-phylogeny} |
+ spread-phy | 4 | {bio-phylogeny,bio} |
tracetuner | 4 | {bio} |
+ vsearch | 4 | {bio,covid-19} |
yaha | 4 | {bio} |
dwgsim | 3 | {bio} |
elph | 3 | {bio} |
@@ -172,7 +172,7 @@ Last-Update: Tue, 26 May 2020 01:42:03 +0000
rdp-classifier | 3 | {bio} |
relion | 3 | {bio} |
scrm | 3 | {bio} |
- seqmagick | 3 | {covid-19,bio} |
+ seqmagick | 3 | {bio,covid-19} |
seqsero | 3 | {bio} |
soapaligner | 3 | {bio} |
spaced | 3 | {bio} |
@@ -180,12 +180,11 @@ Last-Update: Tue, 26 May 2020 01:42:03 +0000
surankco | 3 | {bio} |
tnseq-transit | 3 | {bio,covid-19} |
velvetoptimiser | 3 | {bio} |
- vsearch | 3 | {bio,covid-19} |
atropos | 2 | {bio} |
biosig4c++ | 2 | {physics,imaging-dev} |
biosig4c++ | 2 | {imaging-dev,physics} |
blimps | 2 | {bio} |
- busco | 2 | {bio,covid-19} |
+ busco | 2 | {covid-19,bio} |
cufflinks | 2 | {bio,cloud} |
getdata | 2 | {bio} |
kma | 2 | {bio} |
@@ -196,42 +195,43 @@ Last-Update: Tue, 26 May 2020 01:42:03 +0000
logol | 2 | {bio} |
mencal | 2 | {tools} |
metaphlan2 | 2 | {bio} |
- mhap | 2 | {bio-ngs,bio} |
+ mhap | 2 | {bio,bio-ngs} |
nanook | 2 | {bio} |
openslide | 2 | {imaging-dev} |
- oscar | 2 | {practice,tools,data} |
+ oscar | 2 | {tools,practice,data} |
pal2nal | 2 | {bio} |
pilon | 2 | {bio} |
plasmidseeker | 2 | {bio} |
rampler | 2 | {bio} |
- samblaster | 2 | {covid-19,bio} |
+ samblaster | 2 | {bio,covid-19} |
samtools-legacy | 2 | {bio-dev} |
seqan | 2 | {bio-dev} |
sift | 2 | {bio} |
srf | 2 | {bio-dev} |
- stringtie | 2 | {covid-19,bio} |
+ stringtie | 2 | {bio,covid-19} |
sweed | 2 | {bio} |
trace2dbest | 2 | {bio} |
tvc | 2 | {bio} |
- acedb | 1 | {bio,cloud} |
- biobambam2 | 1 | {bio-dev,bio,covid-19} |
- embassy-phylip | 1 | {bio,cloud} |
+ acedb | 1 | {cloud,bio} |
+ biobambam2 | 1 | {covid-19,bio,bio-dev} |
+ embassy-phylip | 1 | {cloud,bio} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
kmerresistance | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
- libmaus2 | 1 | {covid-19,bio-dev} |
+ libmaus2 | 1 | {bio-dev,covid-19} |
libmialm | 1 | {imaging-dev} |
libxdf | 1 | {imaging-dev} |
ncbi-vdb | 1 | {bio-dev} |
+ ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
- python-py2bit | 1 | {bio-dev,bio} |
+ python-py2bit | 1 | {bio,bio-dev} |
relion | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
- spaln | 1 | {bio,covid-19} |
+ spaln | 1 | {covid-19,bio} |
varscan | 1 | {bio,covid-19} |
volpack | 1 | {imaging-dev} |
augur | 0 | {covid-19,bio} |
@@ -273,9 +273,8 @@ Last-Update: Tue, 26 May 2020 01:42:03 +0000
miaviewit | 0 | {imaging-dev} |
milib | 0 | {covid-19,bio-dev} |
mssstest | 0 | {tools} |
- multiqc | 0 | {bio,covid-19} |
+ multiqc | 0 | {covid-19,bio} |
murasaki | 0 | {bio} |
- ngs-sdk | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
orthanc-imagej | 0 | {imaging} |
parallel-fastq-dump | 0 | {covid-19} |
@@ -296,6 +295,6 @@ Last-Update: Tue, 26 May 2020 01:42:03 +0000
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
wtdbg2 | 0 | {covid-19} |
- bustools | -1 | {covid-19,bio} |
-(324 rows)
+ bustools | -1 | {bio,covid-19} |
+(323 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8cacf565541653fffcb3540650438a3c0454c109
--
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/8cacf565541653fffcb3540650438a3c0454c109
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