[med-svn] [Git][med-team/cat-bat][master] 7 commits: New upstream version 5.0.5

[Andreas Tille]

Andreas Tille pushed to branch master at Debian Med / cat-bat


Commits:
c4dd24ad by Andreas Tille at 2020-05-27T13:26:43+02:00
New upstream version 5.0.5
- - - - -
6254575d by Andreas Tille at 2020-05-27T13:26:43+02:00
routine-update: New upstream version

- - - - -
75de3c8a by Andreas Tille at 2020-05-27T13:26:43+02:00
Update upstream source from tag 'upstream/5.0.5'

Update to upstream version '5.0.5'
with Debian dir fdbff0efba49ce98c46a67c38ceb0266a834d44e
- - - - -
55921d63 by Andreas Tille at 2020-05-27T13:26:44+02:00
routine-update: debhelper-compat 13

- - - - -
4a5ec638 by Andreas Tille at 2020-05-27T13:26:47+02:00
routine-update: Rules-Requires-Root: no

- - - - -
6046a68a by Andreas Tille at 2020-05-27T13:26:53+02:00
Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.

Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html


Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html

- - - - -
3ce2bea0 by Andreas Tille at 2020-05-27T13:27:49+02:00
routine-update: Ready to upload to unstable

- - - - -


7 changed files:

- CAT_pack/about.py
- CAT_pack/bins.py
- CAT_pack/check.py
- CHANGELOG.md
- debian/changelog
- debian/control
- debian/upstream/metadata


Changes:

=====================================
CAT_pack/about.py
=====================================
@@ -1,5 +1,5 @@
 #!/usr/bin/env python3
 
 __author__ = 'F. A. Bastiaan von Meijenfeldt'
-__version__ = '5.0.4'
-__date__ = 'March 18, 2020'
+__version__ = '5.0.5'
+__date__ = 'May 26, 2020'


=====================================
CAT_pack/bins.py
=====================================
@@ -236,6 +236,10 @@ def import_bins(bin_folder,
     contig_names = set()
 
     for file_ in os.listdir(bin_folder):
+        if file_.startswith('.'):
+            # Skip hidden files.
+            continue
+
         if not file_.endswith(bin_suffix):
             continue
         


=====================================
CAT_pack/check.py
=====================================
@@ -232,6 +232,10 @@ def check_bin_folder(bin_folder, bin_suffix, log_file, quiet):
     
     tmp = []
     for file_ in os.listdir(bin_folder):
+        if file_.startswith('.'):
+            # Skip hidden files.
+            continue
+
         if not file_.endswith(bin_suffix):
             continue
 


=====================================
CHANGELOG.md
=====================================
@@ -1,5 +1,8 @@
 # Changelog
 
+## 5.0.5.
+Skip hidden files in bin folder.
+
 ## 5.0.4.
 We have added the `--no_stars` flag alongside a minor bug fix.
 


=====================================
debian/changelog
=====================================
@@ -1,3 +1,13 @@
+cat-bat (5.0.5-1) unstable; urgency=medium
+
+  * New upstream version
+  * debhelper-compat 13 (routine-update)
+  * Rules-Requires-Root: no (routine-update)
+  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
+    Repository-Browse.
+
+ -- Andreas Tille <tille at debian.org>  Wed, 27 May 2020 13:26:54 +0200
+
 cat-bat (5.0.4-1) unstable; urgency=medium
 
   * Initial release (Closes: #960937)


=====================================
debian/control
=====================================
@@ -3,13 +3,14 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.
 Uploaders: Andreas Tille <tille at debian.org>
 Section: science
 Priority: optional
-Build-Depends: debhelper-compat (= 12),
+Build-Depends: debhelper-compat (= 13),
                dh-python,
                python3
 Standards-Version: 4.5.0
 Vcs-Browser: https://salsa.debian.org/med-team/cat-bat
 Vcs-Git: https://salsa.debian.org/med-team/cat-bat.git
 Homepage: https://github.com/dutilh/CAT
+Rules-Requires-Root: no
 
 Package: cat-bat
 Architecture: any


=====================================
debian/upstream/metadata
=====================================
@@ -1,3 +1,5 @@
+Bug-Database: https://github.com/dutilh/CAT/issues
+Bug-Submit: https://github.com/dutilh/CAT/issues/new
 Reference:
   Author: >
     F. A. Bastiaan von Meijenfeldt and Ksenia Arkhipova and Diego D. Cambuy
@@ -18,3 +20,5 @@ Reference:
 Registry:
  - Name: conda:bioconda
    Entry: cat
+Repository: https://github.com/dutilh/CAT.git
+Repository-Browse: https://github.com/dutilh/CAT



View it on GitLab: https://salsa.debian.org/med-team/cat-bat/-/compare/d88bd6803ccabda697f75d0ab33e2cc2b4fb510c...3ce2bea04d1f50bbc999b6fb6cf5e2493ca68954

-- 
View it on GitLab: https://salsa.debian.org/med-team/cat-bat/-/compare/d88bd6803ccabda697f75d0ab33e2cc2b4fb510c...3ce2bea04d1f50bbc999b6fb6cf5e2493ca68954
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