Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
d372837d by Andreas Tille at 2020-05-27T13:45:01+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,54 +1,53 @@
-Last-Update: Wed, 27 May 2020 01:42:03 +0000
+Last-Update: Wed, 27 May 2020 13:42:04 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 186 | {covid-19,imaging} |
- orthanc | 95 | {practice,covid-19,imaging} |
- gdcm | 56 | {imaging-dev} |
- orthanc-wsi | 46 | {his,imaging,practice,oncology,laboratory,covid-19} |
+ dcmtk | 191 | {covid-19,imaging} |
+ orthanc | 96 | {covid-19,practice,imaging} |
+ gdcm | 58 | {imaging-dev} |
+ orthanc-wsi | 46 | {practice,covid-19,his,imaging,laboratory,oncology} |
htsjdk | 33 | {bio-dev} |
- dicom3tools | 29 | {imaging} |
- dicomscope | 26 | {imaging} |
- dcm2niix | 25 | {imaging} |
+ dicom3tools | 30 | {imaging} |
+ dicomscope | 28 | {imaging} |
+ dcm2niix | 26 | {imaging} |
+ gdcm | 18 | {imaging,covid-19} |
minc-tools | 18 | {imaging} |
- gdcm | 17 | {covid-19,imaging} |
gnumed-server | 17 | {covid-19,practice} |
insighttoolkit4 | 17 | {imaging-dev} |
invesalius | 16 | {imaging} |
+ vtk-dicom | 16 | {imaging} |
pixelmed | 15 | {imaging} |
adun.app | 14 | {bio} |
- vtk-dicom | 14 | {imaging} |
- ngs-sdk | 13 | {bio-dev} |
+ king | 13 | {imaging,typesetting} |
+ openslide | 13 | {imaging} |
+ plastimatch | 13 | {imaging} |
stacks | 13 | {bio} |
gdcm | 12 | {imaging-dev} |
- king | 12 | {typesetting,imaging} |
+ ngs-sdk | 12 | {bio-dev} |
obitools | 12 | {bio} |
- openslide | 12 | {imaging} |
- plastimatch | 12 | {imaging} |
biojava-live | 10 | {bio-dev} |
+ biosig4c++ | 10 | {imaging,physics} |
jebl2 | 10 | {bio-dev} |
librg-utils-perl | 10 | {bio} |
- biosig4c++ | 9 | {physics,imaging} |
ngs-sdk | 9 | {bio-dev} |
paml | 9 | {bio} |
psychopy | 9 | {psychology} |
alter-sequence-alignment | 8 | {bio} |
- arden | 8 | {bio,cloud} |
+ arden | 8 | {cloud,bio} |
cgview | 8 | {bio} |
- ea-utils | 8 | {bio} |
- fastlink | 8 | {bio,cloud} |
+ fastlink | 8 | {cloud,bio} |
maqview | 8 | {bio} |
mipe | 8 | {cloud,bio} |
radiant | 8 | {bio} |
- staden | 8 | {bio} |
abacas | 7 | {covid-19,bio} |
anfo | 7 | {bio,cloud} |
biomaj3-cli | 7 | {cloud} |
bio-rainbow | 7 | {bio} |
- bio-tradis | 7 | {bio-dev,bio} |
+ bio-tradis | 7 | {bio,bio-dev} |
bppsuite | 7 | {bio} |
dazzdb | 7 | {bio} |
- embassy-domainatrix | 7 | {cloud,bio} |
+ ea-utils | 7 | {bio} |
+ embassy-domainatrix | 7 | {bio,cloud} |
embassy-domalign | 7 | {bio,cloud} |
indelible | 7 | {bio} |
libminc | 7 | {imaging-dev} |
@@ -57,9 +56,11 @@ Last-Update: Wed, 27 May 2020 01:42:03 +0000
orthanc-webviewer | 7 | {imaging} |
piler | 7 | {bio} |
seer | 7 | {bio} |
+ sibsim4 | 7 | {cloud,bio} |
+ staden | 7 | {bio} |
transtermhp | 7 | {bio} |
- ampliconnoise | 6 | {cloud,bio} |
- beast-mcmc | 6 | {bio,bio-phylogeny} |
+ ampliconnoise | 6 | {bio,cloud} |
+ beast-mcmc | 6 | {bio-phylogeny,bio} |
bitseq | 6 | {bio} |
cluster3 | 6 | {bio} |
daligner | 6 | {bio,bio-ngs} |
@@ -67,25 +68,24 @@ Last-Update: Wed, 27 May 2020 01:42:03 +0000
edtsurf | 6 | {bio} |
embassy-domsearch | 6 | {cloud,bio} |
gatb-core | 6 | {bio} |
- melting | 6 | {bio,cloud} |
+ melting | 6 | {cloud,bio} |
mrs | 6 | {bio} |
nutsqlite | 6 | {tools} |
- orthanc-dicomweb | 6 | {imaging,covid-19} |
+ orthanc-dicomweb | 6 | {covid-19,imaging} |
orthanc-mysql | 6 | {imaging} |
phast | 6 | {bio} |
pymia | 6 | {imaging-dev} |
seqtools | 6 | {bio} |
- sibsim4 | 6 | {cloud,bio} |
sickle | 6 | {bio} |
- sigma-align | 6 | {bio-phylogeny,cloud,bio} |
- zalign | 6 | {cloud,bio} |
+ sigma-align | 6 | {bio,cloud,bio-phylogeny} |
+ zalign | 6 | {bio,cloud} |
assemblytics | 5 | {bio} |
baitfisher | 5 | {bio} |
bandage | 5 | {bio} |
beads | 5 | {bio} |
biomaj3-daemon | 5 | {bio} |
brig | 5 | {bio} |
- clonalframeml | 5 | {covid-19,bio} |
+ clonalframeml | 5 | {bio,covid-19} |
dascrubber | 5 | {bio} |
dicompyler | 5 | {oncology} |
dindel | 5 | {bio} |
@@ -96,38 +96,39 @@ Last-Update: Wed, 27 May 2020 01:42:03 +0000
jellyfish1 | 5 | {bio} |
king-probe | 5 | {bio} |
lagan | 5 | {bio} |
+ libdivsufsort | 5 | {bio-dev} |
libncl | 5 | {bio} |
- mapsembler2 | 5 | {bio,cloud} |
+ mapsembler2 | 5 | {cloud,bio} |
murasaki | 5 | {bio} |
neobio | 5 | {bio,cloud} |
orthanc-postgresql | 5 | {imaging} |
paraclu | 5 | {cloud,bio} |
phyutility | 5 | {cloud,bio} |
predictprotein | 5 | {bio} |
- prime-phylo | 5 | {cloud,bio} |
- probabel | 5 | {cloud,bio} |
+ prime-phylo | 5 | {bio,cloud} |
+ probabel | 5 | {bio,cloud} |
pscan-tfbs | 5 | {bio} |
repeatmasker-recon | 5 | {bio} |
+ rtax | 5 | {bio,cloud} |
saint | 5 | {bio} |
- salmon | 5 | {covid-19,bio} |
+ salmon | 5 | {bio,covid-19} |
seqtools | 5 | {bio} |
snap-aligner | 5 | {bio} |
soapsnp | 5 | {bio} |
- squizz | 5 | {cloud,bio} |
+ squizz | 5 | {bio,cloud} |
treeview | 5 | {bio-phylogeny,bio} |
bart-view | 4 | {imaging} |
beast2-mcmc | 4 | {bio} |
- blasr | 4 | {bio-ngs,bio} |
+ blasr | 4 | {bio,bio-ngs} |
canu | 4 | {bio} |
- centrifuge | 4 | {bio,covid-19} |
+ centrifuge | 4 | {covid-19,bio} |
clonalorigin | 4 | {bio} |
- delly | 4 | {covid-19,bio} |
+ delly | 4 | {bio,covid-19} |
elastix | 4 | {imaging} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
- gasic | 4 | {cloud,bio} |
+ gasic | 4 | {bio,cloud} |
jmodeltest | 4 | {bio,bio-phylogeny} |
- libdivsufsort | 4 | {bio-dev} |
libpal-java | 4 | {bio-dev} |
microbegps | 4 | {bio} |
perm | 4 | {bio,cloud} |
@@ -139,15 +140,13 @@ Last-Update: Wed, 27 May 2020 01:42:03 +0000
rdp-alignment | 4 | {bio} |
rdp-readseq | 4 | {bio} |
roguenarok | 4 | {bio} |
- rtax | 4 | {cloud,bio} |
runcircos-gui | 4 | {bio} |
scythe | 4 | {bio} |
segemehl | 4 | {bio} |
sga | 4 | {bio} |
sprai | 4 | {bio} |
- spread-phy | 4 | {bio-phylogeny,bio} |
+ spread-phy | 4 | {bio,bio-phylogeny} |
tracetuner | 4 | {bio} |
- vsearch | 4 | {bio,covid-19} |
yaha | 4 | {bio} |
dwgsim | 3 | {bio} |
elph | 3 | {bio} |
@@ -180,12 +179,13 @@ Last-Update: Wed, 27 May 2020 01:42:03 +0000
surankco | 3 | {bio} |
tnseq-transit | 3 | {bio,covid-19} |
velvetoptimiser | 3 | {bio} |
+ vsearch | 3 | {covid-19,bio} |
atropos | 2 | {bio} |
biosig4c++ | 2 | {physics,imaging-dev} |
biosig4c++ | 2 | {imaging-dev,physics} |
blimps | 2 | {bio} |
- busco | 2 | {covid-19,bio} |
- cufflinks | 2 | {bio,cloud} |
+ busco | 2 | {bio,covid-19} |
+ cufflinks | 2 | {cloud,bio} |
getdata | 2 | {bio} |
kma | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
@@ -198,12 +198,12 @@ Last-Update: Wed, 27 May 2020 01:42:03 +0000
mhap | 2 | {bio,bio-ngs} |
nanook | 2 | {bio} |
openslide | 2 | {imaging-dev} |
- oscar | 2 | {tools,practice,data} |
+ oscar | 2 | {data,tools,practice} |
pal2nal | 2 | {bio} |
pilon | 2 | {bio} |
plasmidseeker | 2 | {bio} |
rampler | 2 | {bio} |
- samblaster | 2 | {bio,covid-19} |
+ samblaster | 2 | {covid-19,bio} |
samtools-legacy | 2 | {bio-dev} |
seqan | 2 | {bio-dev} |
sift | 2 | {bio} |
@@ -212,8 +212,8 @@ Last-Update: Wed, 27 May 2020 01:42:03 +0000
sweed | 2 | {bio} |
trace2dbest | 2 | {bio} |
tvc | 2 | {bio} |
- acedb | 1 | {cloud,bio} |
- biobambam2 | 1 | {covid-19,bio,bio-dev} |
+ acedb | 1 | {bio,cloud} |
+ biobambam2 | 1 | {bio-dev,bio,covid-19} |
embassy-phylip | 1 | {cloud,bio} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
@@ -227,14 +227,16 @@ Last-Update: Wed, 27 May 2020 01:42:03 +0000
ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
- python-py2bit | 1 | {bio,bio-dev} |
+ python-py2bit | 1 | {bio-dev,bio} |
+ python-scitrack | 1 | {covid-19} |
relion | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
spaln | 1 | {covid-19,bio} |
varscan | 1 | {bio,covid-19} |
volpack | 1 | {imaging-dev} |
- augur | 0 | {covid-19,bio} |
+ wtdbg2 | 1 | {covid-19} |
+ augur | 0 | {bio,covid-19} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
biojava4-live | 0 | {bio-dev} |
@@ -243,7 +245,7 @@ Last-Update: Wed, 27 May 2020 01:42:03 +0000
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
fis-gtm | 0 | {his} |
- htscodecs | 0 | {covid-19,bio-dev} |
+ htscodecs | 0 | {bio-dev,covid-19} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
libbioparser-dev | 0 | {bio-dev} |
@@ -258,7 +260,7 @@ Last-Update: Wed, 27 May 2020 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
libmems | 0 | {bio-dev} |
libmuscle | 0 | {bio-dev} |
@@ -282,19 +284,18 @@ Last-Update: Wed, 27 May 2020 01:42:03 +0000
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
pycoqc | 0 | {bio,covid-19} |
- python-scitrack | 0 | {covid-19} |
- relion | 0 | {bio-dev} |
relion | 0 | {bio} |
+ relion | 0 | {bio-dev} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {bio,covid-19} |
+ smrtanalysis | 0 | {covid-19,bio} |
solvate | 0 | {bio} |
thesias | 0 | {bio,covid-19} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
- wtdbg2 | 0 | {covid-19} |
bustools | -1 | {bio,covid-19} |
-(323 rows)
+ drop-seq | -1 | {bio,covid-19} |
+(324 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/d372837d7ad96175e30a174a0b3000a88cf55279
--
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