[med-svn] [Git][med-team/abacas][master] 2 commits: Add binary:abacas-examples

[Nilesh Patra]

Nilesh Patra pushed to branch master at Debian Med / abacas


Commits:
56755113 by Nilesh Patra at 2020-05-28T20:25:01+05:30
Add binary:abacas-examples
Since we intend not to bloat user's machine with heavy files

- - - - -
75d05f84 by Nilesh Patra at 2020-05-28T20:26:30+05:30
Modify tests to use abacas-examples

- - - - -


3 changed files:

- debian/examples → debian/abacas-examples.docs
- debian/control
- debian/tests/run-unit-test


Changes:

=====================================
debian/examples → debian/abacas-examples.docs
=====================================


=====================================
debian/control
=====================================
@@ -16,7 +16,7 @@ Architecture: all
 Depends: ${perl:Depends},
          ${misc:Depends},
          mummer
-Recommends: primer3
+Recommends: primer3, abacas-examples
 Description: close gaps in genomic alignments from short reads
  ABACAS (Algorithm Based Automatic Contiguation of Assembled Sequences)
  intends to rapidly contiguate (align, order, orientate), visualize and
@@ -32,3 +32,16 @@ Description: close gaps in genomic alignments from short reads
  identity between comparable blocks. Information on contigs such as the
  orientation, percent identity, coverage and overlap with other contigs
  can also be visualized by loading the outputted feature file on ACT.
+
+Package: abacas-examples
+Architecture: all
+Depends: ${misc:Depends}
+Enhances: abacas
+Description: sample data for abacas to close gaps in genomic alignments
+ ABACAS (Algorithm Based Automatic Contiguation of Assembled Sequences)
+ intends to rapidly contiguate (align, order, orientate), visualize and
+ design primers to close gaps on shotgun assembled contigs based on a
+ reference sequence.
+ .
+ This package contains a test data set as well as sample scripts
+ running some test suite provided by Debian also as autopkgtest.


=====================================
debian/tests/run-unit-test
=====================================
@@ -8,7 +8,7 @@ if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
   trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
 fi
 
-cp /usr/share/doc/${pkg}/examples/* -a "${AUTOPKGTEST_TMP}"
+cp /usr/share/doc/abacas-examples/* -a "${AUTOPKGTEST_TMP}"
 
 cd "${AUTOPKGTEST_TMP}"
 gunzip -r *



View it on GitLab: https://salsa.debian.org/med-team/abacas/-/compare/4e9d4f67aab28a99ab5f77f1e12f9a43a60606e9...75d05f847b884c6259a1d1ac18f892ad65b81745

-- 
View it on GitLab: https://salsa.debian.org/med-team/abacas/-/compare/4e9d4f67aab28a99ab5f77f1e12f9a43a60606e9...75d05f847b884c6259a1d1ac18f892ad65b81745
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