Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
1eb656d4 by Andreas Tille at 2020-05-29T13:45:27+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,66 +1,63 @@
-Last-Update: Fri, 29 May 2020 01:42:03 +0000
+Last-Update: Fri, 29 May 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 189 | {imaging,covid-19} |
- orthanc | 94 | {covid-19,practice,imaging} |
- gdcm | 56 | {imaging-dev} |
- orthanc-wsi | 45 | {laboratory,covid-19,his,practice,imaging,oncology} |
- htsjdk | 35 | {bio-dev} |
- dicom3tools | 29 | {imaging} |
+ dcmtk | 190 | {imaging,covid-19} |
+ orthanc | 94 | {practice,imaging,covid-19} |
+ gdcm | 57 | {imaging-dev} |
+ orthanc-wsi | 44 | {imaging,covid-19,laboratory,practice,his,oncology} |
+ htsjdk | 34 | {bio-dev} |
+ dicom3tools | 28 | {imaging} |
dicomscope | 28 | {imaging} |
dcm2niix | 25 | {imaging} |
gdcm | 17 | {imaging,covid-19} |
- gnumed-server | 17 | {covid-19,practice} |
+ gnumed-server | 17 | {practice,covid-19} |
insighttoolkit4 | 17 | {imaging-dev} |
minc-tools | 17 | {imaging} |
invesalius | 15 | {imaging} |
- vtk-dicom | 15 | {imaging} |
- adun.app | 14 | {bio} |
ngs-sdk | 14 | {bio-dev} |
pixelmed | 14 | {imaging} |
stacks | 14 | {bio} |
- gdcm | 12 | {imaging-dev} |
- king | 12 | {typesetting,imaging} |
+ vtk-dicom | 14 | {imaging} |
+ gdcm | 13 | {imaging-dev} |
+ adun.app | 12 | {bio} |
+ king | 12 | {imaging,typesetting} |
obitools | 12 | {bio} |
openslide | 12 | {imaging} |
plastimatch | 12 | {imaging} |
- biojava-live | 11 | {bio-dev} |
- jebl2 | 11 | {bio-dev} |
librg-utils-perl | 11 | {bio} |
+ biojava-live | 10 | {bio-dev} |
+ jebl2 | 10 | {bio-dev} |
paml | 10 | {bio} |
- alter-sequence-alignment | 9 | {bio} |
- arden | 9 | {bio,cloud} |
- biosig4c++ | 9 | {imaging,physics} |
+ biosig4c++ | 9 | {physics,imaging} |
cgview | 9 | {bio} |
fastlink | 9 | {cloud,bio} |
- maqview | 9 | {bio} |
mipe | 9 | {cloud,bio} |
psychopy | 9 | {psychology} |
radiant | 9 | {bio} |
- abacas | 8 | {bio,covid-19} |
- anfo | 8 | {cloud,bio} |
+ alter-sequence-alignment | 8 | {bio} |
+ arden | 8 | {bio,cloud} |
biomaj3-cli | 8 | {cloud} |
- bio-rainbow | 8 | {bio} |
bio-tradis | 8 | {bio-dev,bio} |
bppsuite | 8 | {bio} |
- dazzdb | 8 | {bio} |
ea-utils | 8 | {bio} |
embassy-domainatrix | 8 | {cloud,bio} |
- embassy-domalign | 8 | {cloud,bio} |
indelible | 8 | {bio} |
+ maqview | 8 | {bio} |
ncbi-seg | 8 | {bio} |
norsp | 8 | {bio} |
piler | 8 | {bio} |
- seer | 8 | {bio} |
- sibsim4 | 8 | {cloud,bio} |
- transtermhp | 8 | {bio} |
+ sibsim4 | 8 | {bio,cloud} |
+ abacas | 7 | {bio,covid-19} |
ampliconnoise | 7 | {cloud,bio} |
- beast-mcmc | 7 | {bio,bio-phylogeny} |
+ anfo | 7 | {cloud,bio} |
+ bio-rainbow | 7 | {bio} |
bitseq | 7 | {bio} |
daligner | 7 | {bio,bio-ngs} |
+ dazzdb | 7 | {bio} |
ecopcr | 7 | {bio} |
edtsurf | 7 | {bio} |
+ embassy-domalign | 7 | {cloud,bio} |
embassy-domsearch | 7 | {cloud,bio} |
gatb-core | 7 | {bio} |
libminc | 7 | {imaging-dev} |
@@ -68,15 +65,17 @@ Last-Update: Fri, 29 May 2020 01:42:03 +0000
ngs-sdk | 7 | {bio-dev} |
orthanc-webviewer | 7 | {imaging} |
phast | 7 | {bio} |
+ seer | 7 | {bio} |
seqtools | 7 | {bio} |
sickle | 7 | {bio} |
- sigma-align | 7 | {bio-phylogeny,cloud,bio} |
+ sigma-align | 7 | {bio,cloud,bio-phylogeny} |
staden | 7 | {bio} |
- zalign | 7 | {bio,cloud} |
+ transtermhp | 7 | {bio} |
assemblytics | 6 | {bio} |
baitfisher | 6 | {bio} |
bandage | 6 | {bio} |
beads | 6 | {bio} |
+ beast-mcmc | 6 | {bio-phylogeny,bio} |
biomaj3-daemon | 6 | {bio} |
brig | 6 | {bio} |
clonalframeml | 6 | {bio,covid-19} |
@@ -84,25 +83,25 @@ Last-Update: Fri, 29 May 2020 01:42:03 +0000
dascrubber | 6 | {bio} |
dindel | 6 | {bio} |
estscan | 6 | {bio} |
- freebayes | 6 | {bio,covid-19} |
+ freebayes | 6 | {covid-19,bio} |
harvest-tools | 6 | {bio} |
ipig | 6 | {bio} |
jellyfish1 | 6 | {bio} |
king-probe | 6 | {bio} |
lagan | 6 | {bio} |
libncl | 6 | {bio} |
- mapsembler2 | 6 | {cloud,bio} |
+ mapsembler2 | 6 | {bio,cloud} |
mrs | 6 | {bio} |
murasaki | 6 | {bio} |
- neobio | 6 | {cloud,bio} |
+ neobio | 6 | {bio,cloud} |
nutsqlite | 6 | {tools} |
orthanc-dicomweb | 6 | {covid-19,imaging} |
orthanc-mysql | 6 | {imaging} |
- paraclu | 6 | {bio,cloud} |
+ paraclu | 6 | {cloud,bio} |
phyutility | 6 | {cloud,bio} |
predictprotein | 6 | {bio} |
- prime-phylo | 6 | {cloud,bio} |
- probabel | 6 | {bio,cloud} |
+ prime-phylo | 6 | {bio,cloud} |
+ probabel | 6 | {cloud,bio} |
pscan-tfbs | 6 | {bio} |
pymia | 6 | {imaging-dev} |
repeatmasker-recon | 6 | {bio} |
@@ -113,9 +112,8 @@ Last-Update: Fri, 29 May 2020 01:42:03 +0000
snap-aligner | 6 | {bio} |
soapsnp | 6 | {bio} |
squizz | 6 | {bio,cloud} |
- treeview | 6 | {bio-phylogeny,bio} |
- beast2-mcmc | 5 | {bio} |
- blasr | 5 | {bio,bio-ngs} |
+ treeview | 6 | {bio,bio-phylogeny} |
+ zalign | 6 | {cloud,bio} |
canu | 5 | {bio} |
centrifuge | 5 | {covid-19,bio} |
clonalorigin | 5 | {bio} |
@@ -123,8 +121,8 @@ Last-Update: Fri, 29 May 2020 01:42:03 +0000
dicompyler | 5 | {oncology} |
fastml | 5 | {bio} |
fsm-lite | 5 | {bio} |
- gasic | 5 | {cloud,bio} |
- jmodeltest | 5 | {bio,bio-phylogeny} |
+ gasic | 5 | {bio,cloud} |
+ jmodeltest | 5 | {bio-phylogeny,bio} |
libdivsufsort | 5 | {bio-dev} |
libpal-java | 5 | {bio-dev} |
microbegps | 5 | {bio} |
@@ -132,7 +130,7 @@ Last-Update: Fri, 29 May 2020 01:42:03 +0000
perm | 5 | {cloud,bio} |
phybin | 5 | {bio} |
placnet | 5 | {bio} |
- proalign | 5 | {bio,bio-phylogeny} |
+ proalign | 5 | {bio-phylogeny,bio} |
pscan-chip | 5 | {bio} |
quorum | 5 | {bio} |
rdp-alignment | 5 | {bio} |
@@ -147,6 +145,8 @@ Last-Update: Fri, 29 May 2020 01:42:03 +0000
tracetuner | 5 | {bio} |
yaha | 5 | {bio} |
bart-view | 4 | {imaging} |
+ beast2-mcmc | 4 | {bio} |
+ blasr | 4 | {bio,bio-ngs} |
dwgsim | 4 | {bio} |
elastix | 4 | {imaging} |
elph | 4 | {bio} |
@@ -169,7 +169,7 @@ Last-Update: Fri, 29 May 2020 01:42:03 +0000
rdp-classifier | 4 | {bio} |
relion | 4 | {bio} |
scrm | 4 | {bio} |
- seqmagick | 4 | {covid-19,bio} |
+ seqmagick | 4 | {bio,covid-19} |
seqsero | 4 | {bio} |
soapaligner | 4 | {bio} |
spaced | 4 | {bio} |
@@ -193,11 +193,11 @@ Last-Update: Fri, 29 May 2020 01:42:03 +0000
trace2dbest | 3 | {bio} |
tvc | 3 | {bio} |
atropos | 2 | {bio} |
- biosig4c++ | 2 | {physics,imaging-dev} |
biosig4c++ | 2 | {imaging-dev,physics} |
+ biosig4c++ | 2 | {physics,imaging-dev} |
blimps | 2 | {bio} |
- busco | 2 | {bio,covid-19} |
- cufflinks | 2 | {bio,cloud} |
+ busco | 2 | {covid-19,bio} |
+ cufflinks | 2 | {cloud,bio} |
getdata | 2 | {bio} |
kma | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
@@ -205,25 +205,24 @@ Last-Update: Fri, 29 May 2020 01:42:03 +0000
libsbml | 2 | {bio-dev} |
libvistaio | 2 | {imaging-dev} |
mencal | 2 | {tools} |
- openslide | 2 | {imaging-dev} |
oscar | 2 | {data,tools,practice} |
samtools-legacy | 2 | {bio-dev} |
seqan | 2 | {bio-dev} |
sift | 2 | {bio} |
srf | 2 | {bio-dev} |
- stringtie | 2 | {bio,covid-19} |
- acedb | 1 | {bio,cloud} |
- biobambam2 | 1 | {bio,bio-dev,covid-19} |
- embassy-phylip | 1 | {cloud,bio} |
+ stringtie | 2 | {covid-19,bio} |
+ acedb | 1 | {cloud,bio} |
+ embassy-phylip | 1 | {bio,cloud} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
kmerresistance | 1 | {bio} |
libchado-perl | 1 | {bio-dev} |
- libmaus2 | 1 | {bio-dev,covid-19} |
+ libmaus2 | 1 | {covid-19,bio-dev} |
libmialm | 1 | {imaging-dev} |
libxdf | 1 | {imaging-dev} |
ngs-sdk | 1 | {bio-dev} |
+ openslide | 1 | {imaging-dev} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
python-py2bit | 1 | {bio,bio-dev} |
@@ -231,7 +230,7 @@ Last-Update: Fri, 29 May 2020 01:42:03 +0000
relion | 1 | {bio} |
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
- spaln | 1 | {bio,covid-19} |
+ spaln | 1 | {covid-19,bio} |
varscan | 1 | {bio,covid-19} |
volpack | 1 | {imaging-dev} |
wtdbg2 | 1 | {covid-19} |
@@ -244,7 +243,7 @@ Last-Update: Fri, 29 May 2020 01:42:03 +0000
camp | 0 | {imaging-dev} |
ctn | 0 | {imaging-dev} |
fis-gtm | 0 | {his} |
- htscodecs | 0 | {bio-dev,covid-19} |
+ htscodecs | 0 | {covid-19,bio-dev} |
ivar | 0 | {covid-19} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -260,7 +259,7 @@ Last-Update: Fri, 29 May 2020 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {imaging-dev,covid-19} |
+ libics | 0 | {covid-19,imaging-dev} |
libjloda-java | 0 | {bio-dev} |
libmems | 0 | {bio-dev} |
libmuscle | 0 | {bio-dev} |
@@ -285,20 +284,20 @@ Last-Update: Fri, 29 May 2020 01:42:03 +0000
pbseqlib | 0 | {bio-dev} |
pilercr | 0 | {bio} |
pycoqc | 0 | {bio,covid-19} |
- relion | 0 | {bio} |
relion | 0 | {bio-dev} |
+ relion | 0 | {bio} |
sambamba | 0 | {bio} |
sbmltoolbox | 0 | {bio-dev} |
seq-gen | 0 | {bio} |
skewer | 0 | {bio} |
- smrtanalysis | 0 | {covid-19,bio} |
+ smrtanalysis | 0 | {bio,covid-19} |
solvate | 0 | {bio} |
- thesias | 0 | {covid-19,bio} |
+ thesias | 0 | {bio,covid-19} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
bustools | -1 | {covid-19,bio} |
- cat-bat | -1 | {covid-19,bio} |
- drop-seq | -1 | {bio,covid-19} |
- flash | -1 | {bio,covid-19} |
-(327 rows)
+ cat-bat | -1 | {bio,covid-19} |
+ drop-seq | -1 | {covid-19,bio} |
+ flash | -1 | {covid-19,bio} |
+(326 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/1eb656d497a25786b55eb108e6d8dcae5f151914
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