Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
fda38470 by Andreas Tille at 2020-05-31T13:45:18+00:00
automatic update
- - - - -
2 changed files:
- debian-med-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,24 +1,24 @@
-Last-Update: Sun, 31 May 2020 01:42:03 +0000
+Last-Update: Sun, 31 May 2020 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 190 | {covid-19,imaging} |
- orthanc | 94 | {imaging,covid-19,practice} |
- gdcm | 62 | {imaging-dev} |
- orthanc-wsi | 46 | {his,covid-19,practice,oncology,laboratory,imaging} |
- htsjdk | 32 | {bio-dev} |
+ dcmtk | 188 | {imaging,covid-19} |
+ orthanc | 94 | {practice,imaging,covid-19} |
+ gdcm | 60 | {imaging-dev} |
+ orthanc-wsi | 45 | {his,covid-19,imaging,practice,oncology,laboratory} |
+ htsjdk | 31 | {bio-dev} |
dicom3tools | 28 | {imaging} |
dicomscope | 27 | {imaging} |
dcm2niix | 26 | {imaging} |
insighttoolkit4 | 18 | {imaging-dev} |
- gdcm | 17 | {imaging,covid-19} |
+ gdcm | 17 | {covid-19,imaging} |
gnumed-server | 17 | {covid-19,practice} |
minc-tools | 16 | {imaging} |
invesalius | 15 | {imaging} |
+ king | 14 | {imaging,typesetting} |
pixelmed | 14 | {imaging} |
vtk-dicom | 14 | {imaging} |
gdcm | 13 | {imaging-dev} |
- king | 13 | {typesetting,imaging} |
ngs-sdk | 12 | {bio-dev} |
openslide | 12 | {imaging} |
plastimatch | 12 | {imaging} |
@@ -28,11 +28,9 @@ Last-Update: Sun, 31 May 2020 01:42:03 +0000
librg-utils-perl | 10 | {bio} |
psychopy | 10 | {psychology} |
biojava-live | 9 | {bio-dev} |
- biosig4c++ | 9 | {physics,imaging} |
- cgview | 9 | {bio} |
- jebl2 | 9 | {bio-dev} |
- fastlink | 8 | {bio,cloud} |
- mipe | 8 | {cloud,bio} |
+ biosig4c++ | 9 | {imaging,physics} |
+ jebl2 | 8 | {bio-dev} |
+ mipe | 8 | {bio,cloud} |
radiant | 8 | {bio} |
alter-sequence-alignment | 7 | {bio} |
arden | 7 | {bio,cloud} |
@@ -40,18 +38,18 @@ Last-Update: Sun, 31 May 2020 01:42:03 +0000
bio-tradis | 7 | {bio-dev,bio} |
bppsuite | 7 | {bio} |
ea-utils | 7 | {bio} |
- embassy-domainatrix | 7 | {cloud,bio} |
+ embassy-domainatrix | 7 | {bio,cloud} |
+ fastlink | 7 | {cloud,bio} |
indelible | 7 | {bio} |
libminc | 7 | {imaging-dev} |
maqview | 7 | {bio} |
ncbi-seg | 7 | {bio} |
ngs-sdk | 7 | {bio-dev} |
norsp | 7 | {bio} |
- orthanc-webviewer | 7 | {imaging} |
piler | 7 | {bio} |
- sibsim4 | 7 | {bio,cloud} |
- abacas | 6 | {covid-19,bio} |
- ampliconnoise | 6 | {cloud,bio} |
+ sibsim4 | 7 | {cloud,bio} |
+ abacas | 6 | {bio,covid-19} |
+ ampliconnoise | 6 | {bio,cloud} |
anfo | 6 | {cloud,bio} |
bitseq | 6 | {bio} |
brig | 6 | {bio} |
@@ -60,20 +58,18 @@ Last-Update: Sun, 31 May 2020 01:42:03 +0000
dazzdb | 6 | {bio} |
ecopcr | 6 | {bio} |
edtsurf | 6 | {bio} |
- embassy-domalign | 6 | {bio,cloud} |
+ embassy-domalign | 6 | {cloud,bio} |
embassy-domsearch | 6 | {cloud,bio} |
gatb-core | 6 | {bio} |
melting | 6 | {cloud,bio} |
mrs | 6 | {bio} |
- nutsqlite | 6 | {tools} |
- orthanc-dicomweb | 6 | {imaging,covid-19} |
- orthanc-mysql | 6 | {imaging} |
+ orthanc-webviewer | 6 | {imaging} |
phast | 6 | {bio} |
pymia | 6 | {imaging-dev} |
seer | 6 | {bio} |
seqtools | 6 | {bio} |
sickle | 6 | {bio} |
- sigma-align | 6 | {bio,bio-phylogeny,cloud} |
+ sigma-align | 6 | {bio,cloud,bio-phylogeny} |
staden | 6 | {bio} |
transtermhp | 6 | {bio} |
assemblytics | 5 | {bio} |
@@ -83,12 +79,12 @@ Last-Update: Sun, 31 May 2020 01:42:03 +0000
beast-mcmc | 5 | {bio,bio-phylogeny} |
biomaj3-daemon | 5 | {bio} |
bio-rainbow | 5 | {bio} |
- clonalframeml | 5 | {bio,covid-19} |
+ clonalframeml | 5 | {covid-19,bio} |
dascrubber | 5 | {bio} |
- dicompyler | 5 | {oncology} |
dindel | 5 | {bio} |
+ elastix | 5 | {imaging} |
estscan | 5 | {bio} |
- freebayes | 5 | {covid-19,bio} |
+ freebayes | 5 | {bio,covid-19} |
harvest-tools | 5 | {bio} |
ipig | 5 | {bio} |
jellyfish1 | 5 | {bio} |
@@ -96,39 +92,44 @@ Last-Update: Sun, 31 May 2020 01:42:03 +0000
lagan | 5 | {bio} |
libdivsufsort | 5 | {bio-dev} |
libncl | 5 | {bio} |
- mapsembler2 | 5 | {bio,cloud} |
+ mapsembler2 | 5 | {cloud,bio} |
murasaki | 5 | {bio} |
- neobio | 5 | {bio,cloud} |
- orthanc-postgresql | 5 | {imaging} |
+ neobio | 5 | {cloud,bio} |
+ nutsqlite | 5 | {tools} |
+ orthanc-dicomweb | 5 | {covid-19,imaging} |
+ orthanc-mysql | 5 | {imaging} |
paraclu | 5 | {cloud,bio} |
phyutility | 5 | {bio,cloud} |
predictprotein | 5 | {bio} |
- prime-phylo | 5 | {cloud,bio} |
+ prime-phylo | 5 | {bio,cloud} |
probabel | 5 | {cloud,bio} |
pscan-tfbs | 5 | {bio} |
repeatmasker-recon | 5 | {bio} |
rtax | 5 | {cloud,bio} |
saint | 5 | {bio} |
- salmon | 5 | {bio,covid-19} |
+ salmon | 5 | {covid-19,bio} |
seqtools | 5 | {bio} |
snap-aligner | 5 | {bio} |
soapsnp | 5 | {bio} |
squizz | 5 | {cloud,bio} |
- treeview | 5 | {bio-phylogeny,bio} |
+ treeview | 5 | {bio,bio-phylogeny} |
zalign | 5 | {cloud,bio} |
bart-view | 4 | {imaging} |
canu | 4 | {bio} |
centrifuge | 4 | {covid-19,bio} |
clonalorigin | 4 | {bio} |
delly | 4 | {covid-19,bio} |
- elastix | 4 | {imaging} |
+ dicompyler | 4 | {oncology} |
fastml | 4 | {bio} |
fsm-lite | 4 | {bio} |
- gasic | 4 | {bio,cloud} |
+ gasic | 4 | {cloud,bio} |
+ ghmm | 4 | {bio} |
jaligner | 4 | {bio} |
- jmodeltest | 4 | {bio,bio-phylogeny} |
+ jmodeltest | 4 | {bio-phylogeny,bio} |
libpal-java | 4 | {bio-dev} |
microbegps | 4 | {bio} |
+ mlv-smile | 4 | {cloud,bio} |
+ orthanc-postgresql | 4 | {imaging} |
perm | 4 | {cloud,bio} |
phybin | 4 | {bio} |
placnet | 4 | {bio} |
@@ -146,20 +147,18 @@ Last-Update: Sun, 31 May 2020 01:42:03 +0000
sprai | 4 | {bio} |
spread-phy | 4 | {bio,bio-phylogeny} |
tracetuner | 4 | {bio} |
+ vsearch | 4 | {bio,covid-19} |
yaha | 4 | {bio} |
beast2-mcmc | 3 | {bio} |
blasr | 3 | {bio-ngs,bio} |
dwgsim | 3 | {bio} |
elph | 3 | {bio} |
- ghmm | 3 | {bio} |
hinge | 3 | {bio} |
lamarc | 3 | {bio} |
- libgff | 3 | {bio-dev} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
maffilter | 3 | {bio} |
mauve-aligner | 3 | {bio} |
- mhap | 3 | {bio,bio-ngs} |
- mlv-smile | 3 | {bio,cloud} |
+ mhap | 3 | {bio-ngs,bio} |
mptp | 3 | {bio} |
patman | 3 | {bio} |
pbdagcon | 3 | {bio} |
@@ -172,7 +171,7 @@ Last-Update: Sun, 31 May 2020 01:42:03 +0000
rdp-classifier | 3 | {bio} |
relion | 3 | {bio} |
scrm | 3 | {bio} |
- seqmagick | 3 | {bio,covid-19} |
+ seqmagick | 3 | {covid-19,bio} |
seqsero | 3 | {bio} |
soapaligner | 3 | {bio} |
spaced | 3 | {bio} |
@@ -180,38 +179,37 @@ Last-Update: Sun, 31 May 2020 01:42:03 +0000
surankco | 3 | {bio} |
tnseq-transit | 3 | {covid-19,bio} |
velvetoptimiser | 3 | {bio} |
- vsearch | 3 | {covid-19,bio} |
atropos | 2 | {bio} |
- biosig4c++ | 2 | {imaging-dev,physics} |
biosig4c++ | 2 | {physics,imaging-dev} |
+ biosig4c++ | 2 | {imaging-dev,physics} |
blimps | 2 | {bio} |
busco | 2 | {covid-19,bio} |
getdata | 2 | {bio} |
kma | 2 | {bio} |
libbio-mage-utils-perl | 2 | {bio-dev} |
- libsbml | 2 | {bio-dev} |
+ libgff | 2 | {bio-dev} |
libvistaio | 2 | {imaging-dev} |
logol | 2 | {bio} |
mencal | 2 | {tools} |
metaphlan2 | 2 | {bio} |
nanook | 2 | {bio} |
+ ngs-sdk | 2 | {bio-dev} |
openslide | 2 | {imaging-dev} |
oscar | 2 | {data,tools,practice} |
pal2nal | 2 | {bio} |
pilon | 2 | {bio} |
plasmidseeker | 2 | {bio} |
rampler | 2 | {bio} |
- samblaster | 2 | {covid-19,bio} |
+ samblaster | 2 | {bio,covid-19} |
samtools-legacy | 2 | {bio-dev} |
seqan | 2 | {bio-dev} |
sift | 2 | {bio} |
- srf | 2 | {bio-dev} |
stringtie | 2 | {covid-19,bio} |
sweed | 2 | {bio} |
trace2dbest | 2 | {bio} |
tvc | 2 | {bio} |
acedb | 1 | {cloud,bio} |
- cufflinks | 1 | {bio,cloud} |
+ cufflinks | 1 | {cloud,bio} |
embassy-phylip | 1 | {bio,cloud} |
emboss-explorer | 1 | {bio} |
emmax | 1 | {bio} |
@@ -221,8 +219,8 @@ Last-Update: Sun, 31 May 2020 01:42:03 +0000
libctapimkt | 1 | {practice} |
libmaus2 | 1 | {bio-dev,covid-19} |
libmialm | 1 | {imaging-dev} |
+ libsbml | 1 | {bio-dev} |
libxdf | 1 | {imaging-dev} |
- ngs-sdk | 1 | {bio-dev} |
opensurgsim | 1 | {imaging-dev} |
papyrus | 1 | {imaging-dev} |
python-py2bit | 1 | {bio-dev,bio} |
@@ -231,10 +229,11 @@ Last-Update: Sun, 31 May 2020 01:42:03 +0000
simpleitk | 1 | {imaging-dev} |
skesa | 1 | {bio} |
spaln | 1 | {bio,covid-19} |
+ srf | 1 | {bio-dev} |
varscan | 1 | {covid-19,bio} |
volpack | 1 | {imaging-dev} |
wtdbg2 | 1 | {covid-19} |
- augur | 0 | {bio,covid-19} |
+ augur | 0 | {covid-19,bio} |
bambamc | 0 | {bio-dev} |
bbmap | 0 | {covid-19} |
biojava4-live | 0 | {bio-dev} |
@@ -244,7 +243,7 @@ Last-Update: Sun, 31 May 2020 01:42:03 +0000
ctn | 0 | {imaging-dev} |
drop-seq | 0 | {bio,covid-19} |
fis-gtm | 0 | {his} |
- htscodecs | 0 | {bio-dev,covid-19} |
+ htscodecs | 0 | {covid-19,bio-dev} |
ivar | 0 | {covid-19} |
libbigwig | 0 | {bio-dev} |
libbiod | 0 | {bio-dev} |
@@ -260,7 +259,7 @@ Last-Update: Sun, 31 May 2020 01:42:03 +0000
libgenome | 0 | {bio-dev} |
libgkarrays | 0 | {bio-dev} |
libhmsbeagle | 0 | {bio-dev} |
- libics | 0 | {covid-19,imaging-dev} |
+ libics | 0 | {imaging-dev,covid-19} |
libjloda-java | 0 | {bio-dev} |
libmems | 0 | {bio-dev} |
libmuscle | 0 | {bio-dev} |
@@ -275,7 +274,7 @@ Last-Update: Sun, 31 May 2020 01:42:03 +0000
miaviewit | 0 | {imaging-dev} |
milib | 0 | {bio-dev,covid-19} |
mssstest | 0 | {tools} |
- multiqc | 0 | {bio,covid-19} |
+ multiqc | 0 | {covid-19,bio} |
murasaki | 0 | {bio} |
ncbi-vdb | 0 | {bio-dev} |
opencfu | 0 | {laboratory} |
@@ -293,11 +292,11 @@ Last-Update: Sun, 31 May 2020 01:42:03 +0000
skewer | 0 | {bio} |
smrtanalysis | 0 | {covid-19,bio} |
solvate | 0 | {bio} |
- thesias | 0 | {bio,covid-19} |
+ thesias | 0 | {covid-19,bio} |
varna | 0 | {bio} |
vtk-dicom | 0 | {imaging-dev} |
bustools | -1 | {covid-19,bio} |
cat-bat | -1 | {bio,covid-19} |
flash | -1 | {bio,covid-19} |
-(326 rows)
+(325 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fda38470627813adea8cd0feafc29ad74b07e0bc
--
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